Score E
Sequences producing significant alignments: (bits) Value
gnl|CDD|10062 COG0187, GyrB, Type IIA topoisomerase (DNA gy... 900 0.0
gnl|CDD|24279 smart00433, TOP2c, TopoisomeraseII; Eukaryoti... 678 0.0
gnl|CDD|18151 KOG0355, KOG0355, DNA topoisomerase type II [... 279 2e-75
gnl|CDD|25440 pfam00204, DNA_gyraseB, DNA gyrase B. This fa... 197 8e-51
gnl|CDD|25662 pfam00986, DNA_gyraseB_C, DNA gyrase B subuni... 121 5e-28
gnl|CDD|25917 pfam02518, HATPase_c, Histidine kinase-, DNA ... 69 5e-12
gnl|CDD|25316 smart00387, HATPase_c, Histidine kinase-like ... 68 6e-12
gnl|CDD|17769 cd00075, HATPase_c, Histidine kinase-like ATP... 62 5e-10
gnl|CDD|10197 COG0323, MutL, DNA mismatch repair enzyme (pr... 38 0.011
gnl|CDD|11104 COG1389, COG1389, DNA topoisomerase VI, subun... 36 0.034
gnl|CDD|13231 COG3920, COG3920, Signal transduction histidi... 31 0.84
gnl|CDD|19764 KOG1978, KOG1978, DNA mismatch repair protein... 30 1.7
gnl|CDD|17833 KOG0035, KOG0035, Ca2+-binding actin-bundling... 30 2.4
gnl|CDD|22620 KOG4848, KOG4848, Extracellular matrix-associ... 30 3.0
gnl|CDD|10512 COG0642, BaeS, Signal transduction histidine ... 29 3.8
gnl|CDD|21845 KOG4067, KOG4067, Uncharacterized conserved p... 29 5.2
gnl|CDD|27312 pfam07205, DUF1413, Protein of unknown functi... 28 7.2
gnl|CDD|20265 KOG2479, KOG2479, Translation initiation fact... 28 9.2
>gnl|CDD|10062 COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), B subunit [DNA replication,
recombination, and repair]
Length = 635
Score = 900 bits (2328), Expect = 0.0
Identities = 362/562 (64%), Positives = 446/562 (79%), Gaps = 7/562 (1%)
Query: 2 SENNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSEI 61
Sbjct: 1 SKTNNYDASSIQVLEGLEAVRKRPGMYIGSTGDGRGLHHLVWEVVDNSIDEALAGYADRI 60
Query: 62 SITIHTDESITVRDNGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVG 121
Sbjct: 61 DVTLHEDGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVG 120
Query: 122 VSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGETD--GSGTEVHFKPSPETFS 179
Sbjct: 121 VSVVNALSTWLEVEVKRDGKIYRQRFERGVPVTPLEVIGSTDTKKTGTKVRFKPDPEIFG 180
Query: 180 NIHFSWDILAKRIRELSFLNSGVGILLRDERTGKEEL-FKYEGGLKAFVEYLNTNKTAVN 238
Sbjct: 181 ETEFDYEILKRRLRELAFLNKGVKITLTDERTGEEKKEFHYEGGLKDYVEYLNKGKTPLH 240
Query: 239 EVFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRNLNNY 298
Sbjct: 241 EE-IFYFNGEKDGIAVEVALQWNDGYSENILSFVNNIPTREGGTHEAGFRSALTRAINEY 299
Query: 299 IEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 358
Sbjct: 300 AKKKNLLKEGDL--TGDDIREGLTAVISVKIPDPQFEGQTKEKLGNSEVRSIVEKLVSEA 357
Query: 359 FADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPA 418
Sbjct: 358 FSLFLEENPQEAKKIVEKAIAAAKAREAARKARELTRRKSALDIPGLPGKLADCTSKDPE 417
Query: 419 LSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGC 478
Sbjct: 418 KSELFLVEGDSAGGSAKQGRDREFQAILPLRGKILNVEKARLDKILKNEEIQTIITALGT 477
Query: 479 GIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLYK 538
Sbjct: 478 GIG-KDFDLEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYMPPLIENGHVYIAQPPLYK 536
Query: 539 VKRGKQEQYIKDDQAMEEYMTQ 560
Sbjct: 537 VKKGKKTFYAYDDEELEKLLER 558
Score = 135 bits (341), Expect = 5e-32
Identities = 55/73 (75%), Positives = 63/73 (86%)
Query: 734 KRHSIQRYKGLGEMNPEQLWETTMDPNVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRDF 793
Sbjct: 563 KGYEIQRYKGLGEMNPDQLWETTMDPETRRLLQVTIEDADEADEIFSTLMGDKVEPRRNF 622
Query: 794 IESNALAVSNLDV 806
Sbjct: 623 IEENALFVENLDI 635
>gnl|CDD|24279 smart00433, TOP2c, TopoisomeraseII; Eukaryotic DNA topoisomerase II,
GyrB, ParE
Length = 594
Score = 678 bits (1751), Expect = 0.0
Identities = 281/526 (53%), Positives = 366/526 (69%), Gaps = 7/526 (1%)
Query: 37 GLHHMVFEVVDNSIDEALAGYCSEISITIHTDESITVRDNGRGIPVDIHKEEGVSAAEVI 96
Sbjct: 1 GLHHLVDEIVDNAADEALAGYMDTIKVTIDKDNSISVEDNGRGIPVEIHPKEKKYAPEVI 60
Query: 97 MTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSHELRLTIRRHNKVWEQVYH-HGVPQFP 155
Sbjct: 61 FTVLHAGGKFDDDEYKVSGGLHGVGASVVNALSTEFEVEVARDGKEYKQSFSNNGKPLSE 120
Query: 156 LREVGETDGSGTEVHFKPSPETFSNI-HFSWDILAKRIRELSFLNSGVGILLRDERTGKE 214
Sbjct: 121 PKIIGDTKKDGTKVTFKPDLEIFGMTTDDDFELLKRRLRELAFLNKGVKITLNDERSDEE 180
Query: 215 ELFKYEGGLKAFVEYLNTNKTAVNEVFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNN 274
Sbjct: 181 VTFLFEGGIKDYVELLNKNKELLSPEPTYIEG-EKDNIRVEVAFQYTDGYSENIVSFVNN 239
Query: 275 IPQRDGGTHLAGFRSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKF 334
Sbjct: 240 IATTEGGTHENGFKDALTRVINEYAKKKKKLKEKNI--KGEDVREGLTAFISVKIPEPQF 297
Query: 335 SSQTKDKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMT 394
Sbjct: 298 EGQTKEKLGTSEVRFGVEKIVSECLLSFLEENPVLASKIVEKVLLAAKARAAAKKARELT 357
Query: 395 RRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILN 454
Sbjct: 358 RKKSKLSSISLPGKLADASSAGPKKCELFLVEGDSAGGSAKSGRDRDFQAILPLRGKLLN 417
Query: 455 VEKARFDKMLSSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLT 514
Sbjct: 418 VEKASLDKILKNEEIQALITALGLGIG-KDFDIEKLRYGKIIIMTDADVDGSHIKGLLLT 476
Query: 515 FFFRQMPELIERGYIYIAQPPLYKVKRGKQEQYIKDDQAMEEYMTQ 560
Sbjct: 477 FFYRYMPPLIEAGFVYIAIPPLYKVTKGKKKYVYSFYS-LDEYEKW 521
Score = 114 bits (286), Expect = 1e-25
Identities = 51/93 (54%), Positives = 65/93 (69%), Gaps = 3/93 (3%)
Query: 709 VQKGERKRPISAF--KDGLDWLMAEGTKRH-SIQRYKGLGEMNPEQLWETTMDPNVRRML 765
Sbjct: 501 VTKGKKKYVYSFYSLDEYEKWLETKGNKKKYEIQRYKGLGEMNADQLWETTMDPERRTLL 560
Query: 766 KVTIEDAIAADQIFNTLMGDAVEPRRDFIESNA 798
Sbjct: 561 FVTLDDADEADLIFSALMGDKVEPRKEWIEENA 593
>gnl|CDD|18151 KOG0355, KOG0355, DNA topoisomerase type II [Chromatin structure and
dynamics]
Length = 842
Score = 279 bits (716), Expect = 2e-75
Identities = 128/557 (22%), Positives = 236/557 (42%), Gaps = 31/557 (5%)
Query: 13 KVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSEISITIHT-DESI 71
Sbjct: 32 EQLMWVYDMEKRKMVQRTYV---PGLYKIFDEILVNAADKQRDPKMNTIKVTIDKEKNEI 88
Query: 72 TVRDNGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNTYKVSGG--LHGVGVSVVNALS 129
Sbjct: 89 SVYNNGKGIPVTIHKVEKVYVPELIFGNLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTE 148
Query: 130 HELRLTIRRHNKVWEQVYHHGVPQFPLREVGE-TDGSGTEVHFKPSPETFSNIHFSWDIL 188
Sbjct: 149 FTVETADREYKMAFKQTWINNMTRDEEPKIVPSTDEDYTKITFSPDLEKFKMKELDDDIV 208
Query: 189 AKRIRELSFLNS---GVGILLRDERTGKEELFKYEGGLKAFVEYLNTNKTAVNEVFHFNV 245
Sbjct: 209 ALMARRAYDLAGSVKSVKVELNGKNIPVKGFYDYVKMYLE-VLWLNDDLKPLHE--VLNF 265
Query: 246 QREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRNLNNYIEAEGLA 305
Sbjct: 266 RWEVALALSDVGFQQ--------VSFVNSIATTKGGTHVDYVVDQIVAKLIDVVKKKKVK 317
Query: 306 KKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFADFLLE 365
Sbjct: 318 KD--ISVKPFQVKNHLWVFVNCLIENPTFESQTKERLTLRPKRFGSDCELSEKFTKAIEL 375
Query: 366 NPNEAKAVVGKMIDAARAREAARKAREMTRRKGAL---DIAGLPGKLADCQEKDPALSEL 422
Sbjct: 376 K-GVVESILSKSLNKYKDDLAKKRGKLTSRSKGIPKLEDANDAGTKTS----EKCTLILT 430
Query: 423 YIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGR 482
Sbjct: 431 EGDSAKSLAVSGLSVVGRDYYGVFPLRGKLLNVREASHKQILKNAEINAIIKILGLQYKK 490
Query: 483 EEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLYKVKRG 542
Sbjct: 491 KYFDVESLRYGKLMIMTDQDHDGSHIKGLLINFIHHFWPSLLQIPFLEEFITPIVKATKG 550
Query: 543 KQEQYIKDDQAMEEYMT 559
Sbjct: 551 KQEVSFYSLPEYEKWKK 567
Score = 44.5 bits (105), Expect = 9e-05
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 711 KGERKRPISAF---KDGLDWLMAEGTKRH-SIQRYKGLGEMNPEQLWETTMDPNVRRMLK 766
Sbjct: 546 KATKGKQEVSFYSLPEYEKWKKNTDNWKSWKIKYYKGLGTSTSKEAKEYFSDL-DRHRIL 604
Query: 767 VTIEDAIAADQIFNTLMGDAVEPRRDFIESNA 798
Sbjct: 605 FKYDGGIDDEAIDMAFSKKKIDARKEWLRKYM 636
>gnl|CDD|25440 pfam00204, DNA_gyraseB, DNA gyrase B. This family represents the
second domain of DNA gyrase B which has a ribosomal S5
domain 2-like fold. This family is structurally related
to PF01119
Length = 170
Score = 197 bits (503), Expect = 8e-51
Identities = 90/174 (51%), Positives = 120/174 (68%), Gaps = 6/174 (3%)
Query: 222 GLKAFVEYLNTNKTAV-NEVFHFNVQREEDGVGVEVALQW-NDSFNENLLCFTNNIPQRD 279
Sbjct: 1 GIKLYVKYLNESKEPIHPEPIVYEG---ENGIRVEVALQWSNDGYFEQILSFNNNIPTTE 57
Query: 280 GGTHLAGFRSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTK 339
Sbjct: 58 GGTHVNGFKDALTRALNEYAKKKNKLKK-KDKLTGEDVREGLTAVISVKIPNPQFEGQTK 116
Query: 340 DKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREM 393
Sbjct: 117 EKLGSSEVRFGVECIVSEKLLFFLEENPVDAKAIIEKAADAAKAREAAKKAREL 170
>gnl|CDD|25662 pfam00986, DNA_gyraseB_C, DNA gyrase B subunit, carboxyl terminus.
The amino terminus of eukaryotic and prokaryotic DNA
topoisomerase II are similar, but they have a different
carboxyl terminus. The amino-terminal portion of the DNA
gyrase B protein is thought to catalyse the ATP-dependent
super-coiling of DNA. See pfam00204. The
carboxyl-terminal end supports the complexation with the
DNA gyrase A protein and the ATP-independent relaxation.
This family also contains Topoisomerase IV. This is a
bacterial enzyme that is closely related to DNA gyrase
Length = 67
Score = 121 bits (306), Expect = 5e-28
Identities = 45/65 (69%), Positives = 53/65 (81%)
Query: 731 EGTKRHSIQRYKGLGEMNPEQLWETTMDPNVRRMLKVTIEDAIAADQIFNTLMGDAVEPR 790
Sbjct: 3 NKKGKYEIQRYKGLGEMNPEQLWETTMDPETRTLLQVTIEDAAEADELFSILMGDKVEPR 62
Query: 791 RDFIE 795
Sbjct: 63 REFIE 67
>gnl|CDD|25917 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and
HSP90-like ATPase. This family represents the
structurally related ATPase domains of histidine kinase,
DNA gyrase B and HSP90
Length = 111
Score = 68.9 bits (168), Expect = 5e-12
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 18/112 (16%)
Query: 34 DGTGLHHMVFEVVDNSIDEALAGYCSEISITIHTDE---SITVRDNGRGIPVDIHKEEGV 90
Sbjct: 2 DEDRLRQVLSNLLDNAIKHAPAG--GEITVRLEREGGDVRITVEDNGIGIP--------- 50
Query: 91 SAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSHELRLTIRRHNKV 142
Sbjct: 51 --PEDLERIFEPFFTTDGDSRKIGG--TGLGLSIVKELVELHGGTITVESEP 98
>gnl|CDD|25316 smart00387, HATPase_c, Histidine kinase-like ATPases; Histidine
kinase-, DNA gyrase B-, phytochrome-like ATPases
Length = 112
Score = 68.4 bits (167), Expect = 6e-12
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 18/111 (16%)
Query: 34 DGTGLHHMVFEVVDNSIDEALAGYCSEISITIHTDE---SITVRDNGRGIPVDIHKEEGV 90
Sbjct: 2 DPDRLRQVLSNLLDNAIKYTPEG--GRITVTLEREGDHVEITVEDNGPGIP--------- 50
Query: 91 SAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSHELRLTIRRHNK 141
Sbjct: 51 --PEDLEKIFEPFFRTDKRSRKIGG--TGLGLSIVKKLVELHGGEISVESE 97
>gnl|CDD|17769 cd00075, HATPase_c, Histidine kinase-like ATPases; This family
includes several ATP-binding proteins for example:
histidine kinase, DNA gyrase B, topoisomerases, heat
shock protein HSP90, phytochrome-like ATPases and DNA
mismatch repair proteins
Length = 103
Score = 62.3 bits (151), Expect = 5e-10
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 18/103 (17%)
Query: 38 LHHMVFEVVDNSIDEALAGYCSEISITIHTDE---SITVRDNGRGIPVDIHKEEGVSAAE 94
Sbjct: 1 LQQVLLNLLSNAIKHTPEG-GGRITISVERDGDHLEIRVEDNGPGIPEEDLE-------- 51
Query: 95 VIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSHELRLTIR 137
Sbjct: 52 ------RIFERFSDGSRSRKGGGTGLGLSIVKKLVELHGGRIE 88
>gnl|CDD|10197 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA
replication, recombination, and repair]
Length = 638
Score = 37.6 bits (87), Expect = 0.011
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 41 MVFEVVDNSIDEALAGYCSEISITIHTD--ESITVRDNGRGIPVD 83
Sbjct: 27 VVKELVENSLD---AG-ATRIDIEVEGGGLKLIRVRDNGSGIDKE 67
>gnl|CDD|11104 COG1389, COG1389, DNA topoisomerase VI, subunit B [DNA replication,
recombination, and repair]
Length = 538
Score = 36.1 bits (83), Expect = 0.034
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 15/94 (15%)
Query: 37 GLHHMVFEVVDNSIDEA-LAGYCSEISITIHTDE----SITVRDNGRGIPVDIHKEEGVS 91
Sbjct: 36 SLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEE-------Q 88
Query: 92 AAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVV 125
Sbjct: 89 IPKVFGKML-YGSKFHRN--IQSRGQQGIGISAA 119
>gnl|CDD|13231 COG3920, COG3920, Signal transduction histidine kinase [Signal
transduction mechanisms]
Length = 221
Score = 31.4 bits (71), Expect = 0.84
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 31 DTDDGTGLHHMVFEVVDNSIDEA-LAGYCSEISITIHTDES-----ITVRDNGRGIPVDI 84
Sbjct: 116 DPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVEA 175
>gnl|CDD|19764 KOG1978, KOG1978, DNA mismatch repair protein - MLH2/PMS1/Pms2 family
[Replication, recombination and repair]
Length = 672
Score = 30.4 bits (68), Expect = 1.7
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 36 TGLHHMVFEVVDNSIDEALAGYCSEISITI--HTDESITVRDNGRGI 80
Sbjct: 19 TSLVSAVKELVENSIDAG----ATAIDIKVKDYGSDSIEVSDNGSGI 61
>gnl|CDD|17833 KOG0035, KOG0035, Ca2+-binding actin-bundling protein (actinin),
alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Length = 890
Score = 30.0 bits (67), Expect = 2.4
Identities = 20/107 (18%), Positives = 31/107 (28%)
Query: 337 QTKDKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRR 396
Sbjct: 342 QTKLRLESRPAKLASSGVLVSDINDAWQGLEQAEKLYEESLLAEIRRLERLEHLASKFSQ 401
Query: 397 KGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQ 443
Sbjct: 402 KASLHESWTPGKEQVLFLNDYGQALLEECKELTKKHEAFESDLSAHQ 448
>gnl|CDD|22620 KOG4848, KOG4848, Extracellular matrix-associated peroxidase
[Extracellular structures, Defense mechanisms]
Length = 225
Score = 29.7 bits (66), Expect = 3.0
Identities = 36/200 (18%), Positives = 69/200 (34%), Gaps = 30/200 (15%)
Query: 288 RSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVS--S 345
Sbjct: 11 RLSRKRMLRNWR---LLARSFAPNSRGSEEIAPKVDVSFLRWPRHRIILAGGMPPVQWDS 67
Query: 346 EVKTAVEQEMGKYFA-------------DFLLENPN---EAKAVVGKMIDAARAREAARK 389
Sbjct: 68 ERRAYRRERFGRYGAKSGVPPEELFPSAEEIREFNNAKKEYKELLKKMRESLRILYTKEP 127
Query: 390 AREMTRRKG-ALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPL 448
Sbjct: 128 EKFTFREAEIAKNMKKYPQTLAKYEAS--------LVKQEQEADAKEVRLERLIREIQEY 179
Query: 449 KGKILNVEKARFDKMLSSQE 468
Sbjct: 180 FGYWVDPRDPRFEEMLQQKE 199
>gnl|CDD|10512 COG0642, BaeS, Signal transduction histidine kinase [Signal
transduction mechanisms]
Length = 336
Score = 29.4 bits (64), Expect = 3.8
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 34 DGTGLHHMVFEVVDNSIDEALAGYCSEISITIHTDES---ITVRDNGRGIPVDI 84
Sbjct: 225 DPERLRQVLVNLLSNAIKYTPGG---EITISVRQDDEQVTISVEDTGPGIPEEE 275
>gnl|CDD|21845 KOG4067, KOG4067, Uncharacterized conserved protein [Function
unknown]
Length = 195
Score = 28.8 bits (64), Expect = 5.2
Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 232 TNKTAVNE--VFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRS 289
Sbjct: 28 PDYESINHVVVFLLGNSPFPVGMGASVYFQWPGQPEFQLLGFVTN-----------EKPS 76
Query: 290 ALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKV-PDPKFSSQTKDKLVSSEVK 348
Sbjct: 77 AIFK-VQQPKSGDGSGHAD---PFGDTNISSNIAQIGVSVEPLETSAQSTPNAVSLSRPN 132
Query: 349 TAVEQEMGKYFADFL 363
Sbjct: 133 KSFAQKILTNFFNFM 147
>gnl|CDD|27312 pfam07205, DUF1413, Protein of unknown function (DUF1413). This
family consists of several hypothetical bacterial
proteins which seem to be specific to Staphylococcus
species. Members of this family are typically around 100
residues in length. The function of this family is
unknown
Length = 96
Score = 28.4 bits (63), Expect = 7.2
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 325 ISVKVPD-PKFSSQTKDKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGK 376
Sbjct: 18 ISFNLPVGSTFTYHDLNKRANVQCSTAVQQNVGRWFAYFVKYTPRLPFIIVGK 70
>gnl|CDD|20265 KOG2479, KOG2479, Translation initiation factor 3, subunit d (eIF-3d)
[Translation, ribosomal structure and biogenesis]
Length = 549
Score = 28.0 bits (62), Expect = 9.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 755 TTMDPNVRRMLKVTIEDAIAADQIFNTLM 783
Sbjct: 231 TTDDPVIRRLAKETKGNVFATDAILATLM 259
Lambda K H
0.316 0.135 0.384
Gapped
Lambda K H
0.267 0.0484 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 1100, Extension: 100
Number of Hits to DB: 13,213,694
Number of Sequences: 0
Number of extensions: 1301421
Number of successful extensions: 452
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of query: 0
length of database: 5,506,404
effective HSP length: 102
effective length of query: -102
effective length of database: 3,666,426
effective search space: -373975452
effective search space used: 2581163904
T: 11
A: 40
X1: 1600 (730.5 bits)
X2: 3800 (1463.8 bits)
X3: 6400 (2465.3 bits)
S1: 4100 (1874.8 bits)
S2: 58 (26.7 bits)