Score E
Sequences producing significant alignments: (bits) Value
gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] 83 5e-15
dbj|BAC70262.1| (AP005031) putative translation initiation ... 68 2e-10
emb|CAB77344.1| (AL939119) conserved hypothetical protein S... 65 2e-09
emb|CAB07541.1| (Z93338) hypothetical protein [Pimelobacter... 65 2e-09
gb|AAK53451.1| (AY032926) putative PHA synthase [Streptomyc... 63 6e-09
emb|CAC32349.1| (AL939118) putative bifunctional protein (h... 62 8e-09
dbj|BAC69248.1| (AP005027) putative oxidoreductase [Strepto... 62 1e-08
emb|CAE07113.1| (BX569690) possible N-terminal part of IF-2... 62 1e-08
gb|AAK62517.1| (AY034092) putative hydroxyproline-rich prot... 61 2e-08
gb|AAM54086.1|AF453501_12 (AF453501) transcriptional regula... 60 4e-08
gb|AAG20155.1| (AE005093) Vng1983h [Halobacterium sp. NRC-1] 60 5e-08
dbj|BAC50127.1| (AP005952) bll4862 [Bradyrhizobium japonicu... 59 1e-07
dbj|BAB99378.1| (AP005280) Translation initiation factor 2 ... 58 2e-07
gb|AAG29834.1|AF308446_1 (AF308446) unknown [Paracoccus pan... 58 2e-07
gb|AAD42858.1|AF159693_1 (AF159693) serine/threonine kinase... 57 3e-07
emb|CAA39559.1| (X56082) endo-glucanase [Ruminococcus flave... 55 1e-06
dbj|BAC71268.1| (AP005035) hypothetical protein [Streptomyc... 55 1e-06
gb|AAM09086.1| (AY008259) Tpase2 [Frankia sp. Ar15] 55 2e-06
emb|CAB75380.1| (AL939113) conserved hypothetical protein S... 55 2e-06
gb|AAK24155.1| (AE005890) hypothetical protein [Caulobacter... 54 2e-06
gb|AAK62519.1| (AY034092) proline-rich extensin-like protei... 54 2e-06
dbj|BAC69791.1| (AP005029) hypothetical protein [Streptomyc... 54 2e-06
dbj|BAC45786.1| (AP005936) blr0521 [Bradyrhizobium japonicu... 54 2e-06
gb|AAF12376.1|AE001863_1 (AE001863) adenine deaminase-relat... 54 2e-06
dbj|BAA75913.1| (AB024601) uridylyl transferase [Pseudomona... 54 2e-06
dbj|BAA96299.1| (AB035548) Orf5 [Streptomyces virginiae] 54 3e-06
gb|AAL77233.1|AF283711_1 (AF283711) putative 1-deoxy-D-xylu... 52 9e-06
gb|AAK62482.1| (AY034092) MC8 [Micrococcus sp. 28] 52 9e-06
gb|AAF10059.1|AE001907_5 (AE001907) penicillin-binding prot... 52 1e-05
emb|CAC41624.1| (AJ318089) putative DNA-binding protein [Bi... 52 1e-05
gb|AAK20149.1| (AY027524) hypothetical protein [Frankia sp.... 51 2e-05
emb|CAD55362.1| (AL939124) probable translational initiatio... 51 3e-05
gb|AAK24164.1| (AE005891) hypothetical protein [Caulobacter... 50 3e-05
emb|CAC09556.1| (AL939115) hypothetical protein SCE41.24c [... 50 3e-05
gb|AAC33839.1| (U93363) 2-aminomuconic acid semialdehyde de... 50 3e-05
gb|AAA21754.1| (L20249) homologous to Saccharopolyspora ery... 50 3e-05
gb|AAK62477.1| (AY034092) putative DNA-invertase [Micrococc... 50 4e-05
gb|AAF10038.1|AE001904_14 (AE001904) hypothetical protein [... 50 4e-05
gb|AAC82365.1| (AF055904) unknown [Myxococcus xanthus] 50 4e-05
gb|AAA26482.1| (M83110) ORF homologous to Escherichia coli ... 50 4e-05
gb|AAK62518.1| (AY034092) putative minor silk ampullate pro... 50 6e-05
gb|AAK49004.1| (AY033403) USC3-5p [Myxococcus xanthus] 50 6e-05
gb|AAF11688.1|AE002048_8 (AE002048) ABC transporter, ATP-bi... 50 6e-05
emb|CAA55649.1| (X79027) unknown [Microbacterium ammoniaphi... 49 7e-05
emb|CAB37473.1| (AL939124) putative large Pro/Ala/Gly-rich ... 49 7e-05
gb|AAD33689.1|AF136403_1 (AF136403) unknown [Pseudomonas ae... 49 7e-05
gb|AAD42854.1|AF159690_2 (AF159690) serine/threonine kinase... 49 1e-04
dbj|BAC74442.1| (AP005047) hypothetical protein [Streptomyc... 49 1e-04
dbj|BAC69982.1| (AP005030) hypothetical protein [Streptomyc... 49 1e-04
gb|AAL42873.1| (AE009142) OmpA family protein [Agrobacteriu... 48 2e-04
gb|AAK87643.1| (AE008107) AGR_C_3445p [Agrobacterium tumefa... 48 2e-04
dbj|BAC19464.1| (AP005223) hypothetical protein [Corynebact... 48 2e-04
gb|AAC32046.1| (AF034152) ExiT [Mycobacterium smegmatis] 48 2e-04
emb|CAB87325.1| (AL939114) hypothetical protein SCE50.03 [S... 48 2e-04
emb|CAE21703.1| (BX572099) Translation initiation factor IF... 47 3e-04
emb|CAB60182.1| (AL939127) conserved hypothetical protein S... 47 3e-04
emb|CAA18516.1| (AL939125) putative ABC transporter [Strept... 47 3e-04
emb|CAC01367.1| (AL939122) putative helicase [Streptomyces ... 47 3e-04
emb|CAC05758.1| (AL939122) putative membrane protein [Strep... 47 3e-04
dbj|BAC70405.1| (AP005032) putative sensor-like histidine k... 47 3e-04
dbj|BAC70255.1| (AP005031) hypothetical protein [Streptomyc... 47 3e-04
dbj|BAA80204.1| (AP000061) 161aa long hypothetical protein ... 47 3e-04
gb|AAK44515.1| (AE006937) hypothetical protein [Mycobacteri... 46 8e-04
dbj|BAC72595.1| (AP005040) putative NADH dehydrogenase [Str... 46 8e-04
dbj|BAC71917.1| (AP005038) putative two-component system se... 46 8e-04
gb|AAM81587.1| (AY118081) putative polyketide type 1 syntha... 45 0.001
emb|CAB97255.1| (X02499) unnamed protein product [Rhodospir... 45 0.001
emb|CAD16010.1| (AL646069) PROBABLE GSPD-RELATED PROTEIN [R... 45 0.001
gb|AAL53251.1| (AE009639) Hypothetical Membrane Associated ... 45 0.001
gb|AAN33295.1|AE014512_6 (AE014512) conserved hypothetical ... 45 0.001
emb|CAB71241.1| (AL939129) putative membrane protein. [Stre... 45 0.001
dbj|BAC72811.1| (AP005041) hypothetical protein [Streptomyc... 45 0.001
dbj|BAC72038.1| (AP005038) putative serine/threonine protei... 45 0.001
emb|CAE33076.1| (BX640444) flagellar hook-length control pr... 45 0.002
gb|AAC45799.2| (U86454) hook length control protein FliK [R... 45 0.002
emb|CAB88971.1| (AL939130) hypothetical protein SC8F11.20c.... 44 0.002
dbj|BAC73897.1| (AP005045) hypothetical protein [Streptomyc... 44 0.002
gb|AAF10356.1|AE001932_8 (AE001932) hypothetical protein [D... 44 0.002
gb|AAN10251.1| (AY116644) putative secreted protein [Strept... 44 0.003
gb|AAM42162.1| (AE012402) beta-hexosaminidase [Xanthomonas ... 44 0.003
gb|AAM41820.1| (AE012366) FimV protein [Xanthomonas campest... 44 0.003
emb|CAB45227.1| (AL939118) putative serine/threonine protei... 44 0.003
gb|AAF61923.1| (AF228524) SanE [Streptomyces ansochromogenes] 44 0.003
emb|CAA22501.1| (AL939126) proline rich protein (putative m... 44 0.004
gb|AAF18101.1|AF204400_1 (AF204400) FrgA [Myxococcus xanthus] 44 0.004
dbj|BAC44758.1| (AP004174) hypothetical protein [Mycoplasma... 44 0.004
gb|AAA21906.1| (M60896) beta-lytic protease [Achromobacter ... 44 0.004
gb|AAM38671.1| (AE012031) ATP-dependent RNA helicase [Xanth... 43 0.005
gb|AAL41112.1| (AE008982) translation initiation factor IF-... 43 0.005
gb|AAK85907.1| (AE007950) AGR_C_131p [Agrobacterium tumefac... 43 0.005
dbj|BAA80086.1| (AP000060) 253aa long hypothetical protein ... 43 0.005
gb|AAF11681.1|AE002048_1 (AE002048) conserved hypothetical ... 43 0.005
gb|AAG08367.1|AE004911_2 (AE004911) probable two-component ... 43 0.007
emb|CAE36807.1| (BX640427) flagellar hook-length control pr... 43 0.007
emb|CAA22033.1| (AL939128) putative dehydrogenase [Streptom... 43 0.007
gb|AAG49547.1|AF261103_3 (AF261103) translation initiation ... 43 0.007
emb|CAC17653.1| (AL939121) hypothetical protein SCK20.06 [S... 42 0.009
emb|CAB95982.1| (AL939107) hypothetical protein 2SCG4.11 [S... 42 0.009
gb|AAK62475.1| (AY034092) putative transcriptional activato... 42 0.009
dbj|BAC70809.1| (AP005033) putative ATP-dependent RNA helic... 42 0.009
>gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens]
Length = 579
Score = 83.2 bits (204), Expect = 5e-15
Identities = 134/442 (30%), Positives = 159/442 (35%), Gaps = 104/442 (23%)
Query: 243 GLRFPIDPRPATCGGGLRHARA---------GHQP------------VDRPRPGRAPGRR 281
GLR P PR G RH + G QP V R RP P RR
Sbjct: 67 GLRVPAPPRRTDQQRGHRHRQRVRLRERHLRGRQPHPRGQHEQRRRQVARHRPPLRPHRR 126
Query: 282 VRCQPGGPRPGSVEPARALAVGEPVGGFLHPLRAQSGSRCALPAGGCVFGALGGPAGRAR 341
R Q R + R + EP G RAQ + G+
Sbjct: 127 PRRQHPAQRQHQGQERR-VGHREPHGDE----RAQRSRQLH---------------GQGH 166
Query: 342 CAPDRACTVAGDGRRHP---------ADRLGPDRPP---GAP--RALPQRPRRMPGGRPN 387
P ++C RRH + GP R P GAP R + R PG RP
Sbjct: 167 RVPPQSCPEQHRQRRHQQHQRGGLVRGEPQGPARQPRDHGAPDHRGDREHRTRHPGARPQ 226
Query: 388 R-PGHAAVAAAERHLRGSAGVAVLLPAAHLDTTRTAPAQRRGR-----GAA---HRRLDL 438
PG AE +RG G P AH R+ + R R GAA +
Sbjct: 227 SGPGEQRRQRAEHRVRGPLGRQRQQPGAHRPGHRSHQSGHRHRRRAPLGAATPDRQGEQD 286
Query: 439 LRRLRLPATPH--APMRQATAGAGRPPGELHRLRRRSAVAAGSPPPARRGTPPGIA-PRS 495
+ RLP ++Q PP E HR R A P RRG PP PR+
Sbjct: 287 AHQSRLPGQRERVGHVQQRAGQQEGPPAERHRAR------ADDPAQRRRGRPPATTGPRT 340
Query: 496 -PAGPRSAGPAGRRRLPPALRRLTLRAPPAMSVRCRRAAVAAI-PAAACRASSPT-VQGR 552
PAGP AGPAG RR P R +RA + CR A V PA A PT G
Sbjct: 341 GPAGP--AGPAGPRRSAPG-RARRIRARGSRCRCCRGAGVEPEGPANGAGAGRPTATSGY 397
Query: 553 REPRRFPRRCARHPVRPPRSARGFPVSAVRRWCRPVPVRGSVVPRRPGTASDRPAPEPSR 612
P+ AR P R P RP P R + P R G+ RPA P+R
Sbjct: 398 ARPQH-----ARPPARAPPGP------------RPAPTRAASTPARTGS---RPASPPTR 437
Query: 613 PGVVAGRRAAGCAGRPRRAASA 634
P + AA P RAA+A
Sbjct: 438 PTAPSPAPAA-----PPRAAAA 454
Score = 73.2 bits (178), Expect = 5e-12
Identities = 117/404 (28%), Positives = 131/404 (32%), Gaps = 57/404 (14%)
Query: 140 RGAADRPRPTALSSRPG-RERGGRSAGKR-LAAAGAVRRVRWPIAAGGRL-QLRAQPAGQ 196
+G A +PR G RE R G R + G RR R G L + R QP
Sbjct: 196 QGPARQPRDHGAPDHRGDREHRTRHPGARPQSGPGEQRRQRAEHRVRGPLGRQRQQPGAH 255
Query: 197 APPTALAGPAAWLAGRCH---AGLGATRDLRLGSPCAGLIECTAGLESAGLRFPIDPRPA 253
P G + +G H A LGA R G A E G + R
Sbjct: 256 RP-----GHRSHQSGHRHRRRAPLGAATPDRQGEQDAHQSRLPGQRERVG---HVQQRAG 307
Query: 254 TCGG--GLRHARAGHQPVDRPRPGRAPGRRVRCQPGGPRPGSVEPARALAVGEPVGGFLH 311
G RH P R R GR P GPR G PA G
Sbjct: 308 QQEGPPAERHRARADDPAQRRR-GRPPATT------GPRTGPAGPAGPAGPRRSAPGRAR 360
Query: 312 PLRAQSGSRCALPAGGCVFGALGGPAGRARCAPDRACTVAGDGRRHPADRLGPDRPPGAP 371
+RA+ GSRC C GA P G A A T A G P P R P P
Sbjct: 361 RIRAR-GSRCR-----CCRGAGVEPEGPANGAGAGRPT-ATSGYARPQHARPPARAPPGP 413
Query: 372 RALPQRPRRMP---GGRPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTRTAPAQRRG 428
R P R P G RP P A + A PA T P R
Sbjct: 414 RPAPTRAASTPARTGSRPASPPTRPTAPSPAPAAPPRAAAAPTPARRPPPPPTPPVPRAR 473
Query: 429 RGAAHRR------LDLLRRLRLPATPHA---PMRQATAGAGRPPGELHRLRRR------- 472
RG A D R PA+P P+R+ R P H R
Sbjct: 474 RGPAAGNGRPPSTRDRTAGTRAPASPPGAPPPVRRRRPPPPRAPPPHHPSARNPSARATP 533
Query: 473 --------SAVAAGSPPPARRGTPPGIAPRSPAGPRSAGPAGRR 508
SA A PPP P G AP P+GPRS P RR
Sbjct: 534 RPRPPPRPSAAARPEPPPRAAPGPSGTAPGPPSGPRSPSPLHRR 577
>dbj|BAC70262.1| (AP005031) putative translation initiation factor IF-2
[Streptomyces avermitilis MA-4680]
Length = 1046
Score = 67.8 bits (164), Expect = 2e-10
Identities = 115/401 (28%), Positives = 133/401 (33%), Gaps = 90/401 (22%)
Query: 6 AVPRLATGATPGH---AQARGLGRPEWRDPGTAAIDGLCADRRPASGVRPVRGDAASGDR 62
A PR A A PG AQA P P AA + RPA+ RP AA G R
Sbjct: 58 AAPRKAAPAKPGAPSPAQAARPAAPRPPAPKPAAAE------RPAAAERPAAAPAAPGPR 111
Query: 63 LPVGLVALPGER-----SHRGDLGAAVQFGGPPGAAGQPAIRPGRAAADLSRRRLPVAAR 117
PG + + AA +F PP A PA AAA +
Sbjct: 112 --------PGPKPAPRPAPAAPAPAAPEFTAPPSAPAAPA-----AAA---------SGP 149
Query: 118 RPARRVAGQFRLAFGDARLHPWRGAADRPRP-TALSSRPGRERGGRSAGKRLAAAGAVRR 176
RP R P+P A + PG+ +GG+ G+R R
Sbjct: 150 RPGARPGA--------------------PKPGGARPATPGQGQGGQVRGERTDRGDRGDR 189
Query: 177 VRWPIAAGGRLQLRAQPAGQAPPTALAGPAAWLAGRCHAGLGATRDLRLGSPCAGLIECT 236
G Q A+P GQAP G+T R +P G
Sbjct: 190 --------GDRQGAARPGGQAPRPGARPAGPRPGNNPFTSGGSTGMARPQAPRPG----- 236
Query: 237 AGLESAGLRFPIDPRPATCGGGLRHARAGHQPVDRPRPGRAPGRRVRCQPGG-PRPGSVE 295
G P PRP GG R R P PRP PG R PGG PRP +
Sbjct: 237 GAPRPGGAGAPGGPRPQGAGGQDRAPRPQGGPGGAPRPQGGPG-GARPTPGGMPRPQAPR 295
Query: 296 PARALAVGEPVGGFLHPLRAQSGSRCALPAGGCVFGALGGPAGRARCAPDRACTVAGDGR 355
P A P G + P R +G R P G GGP GR R G G
Sbjct: 296 PGGAPGGNRPNPGMM-PQRPAAGPR---PGG-------GGPGGRGPGGGGRPGGPGGGGG 344
Query: 356 RHPADRLGPDRPPGAPRALPQRPRRMPG------GRPNRPG 390
R P RP G RP G GRP PG
Sbjct: 345 R-PGGGGFAGRPGGGGGGFAGRPGGPGGGGGGFAGRPGGPG 384
Score = 61.6 bits (148), Expect = 1e-08
Identities = 127/464 (27%), Positives = 145/464 (31%), Gaps = 89/464 (19%)
Query: 77 RGDLGAAVQFGGPPGAAGQPAIRPGRAAADLSRRRLPVAARRPARRVAGQFRLAFGDARL 136
+G+ G A P G P+ P +AA P A R PA + A
Sbjct: 52 QGNGGKAAPRKAAPAKPGAPS--PAQAAR-------PAAPRPPAPKPA------------ 90
Query: 137 HPWRGAADRP----RPTALSSRPGRERGGRSAGKRLAAAGAVRRVRWPIAAGGRLQLRAQ 192
AA+RP RP A + PG G + A + AA A A
Sbjct: 91 -----AAERPAAAERPAAAPAAPGPRPGPKPAPRPAPAAPAP----------------AA 129
Query: 193 PAGQAPPTALAGPAAWLAGRCHAGLGATRDLRLGSPCAGLIECTAGLESAGLRFPIDPRP 252
P APP+A A PAA A G R G+P G RP
Sbjct: 130 PEFTAPPSAPAAPAA-------AASGPRPGARPGAPKPG-----------------GARP 165
Query: 253 ATCGGGLRHARAGHQPVDRPRPGRAPGRRVRCQPGG--PRPGSVEPARALAVGEPV--GG 308
AT G G G + DR G R+ +PGG PRPG+ PA P GG
Sbjct: 166 ATPGQGQGGQVRGER-TDRGDRGDRGDRQGAARPGGQAPRPGA-RPAGPRPGNNPFTSGG 223
Query: 309 FLHPLRAQSGSRCALPAGGCVFGALGGPAGRARCAPDRACTVAGDGRRHPADRLGPD--- 365
R Q+ P G GA GGP + DRA G P + GP
Sbjct: 224 STGMARPQAPRPGGAPRPGGA-GAPGGPRPQGAGGQDRAPRPQGGPGGAPRPQGGPGGAR 282
Query: 366 -RPPGAPRALPQRPRRMPGGRPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTRTAPA 424
P G PR RP PGG PG A G G P
Sbjct: 283 PTPGGMPRPQAPRPGGAPGGNRPNPGMMPQRPAAGPRPGGGGPGGRGPGGGGRPGGPGGG 342
Query: 425 QRRGRGAAHRRLDLLRRLRLPATPHAPMRQATAGAGRPPGELHRLRRRSAVAAGSPP-PA 483
R G P P AGRP G G P
Sbjct: 343 GGRPGGGGFAGRPGGGGGGFAGRPGGPGGGGGGFAGRPGGP-------GGGGGGRPGFGG 395
Query: 484 RRGTPPGIAPRSPAGPRSAGPAGRRRLPPALRRLTLRAPPAMSV 527
R G P G A R GPA R R RR A A SV
Sbjct: 396 RPGGPGGRGGTQGAFGRPGGPARRGRKSKRQRRQEYEAMQAPSV 439
Score = 46.6 bits (109), Expect = 5e-04
Identities = 93/350 (26%), Positives = 106/350 (30%), Gaps = 72/350 (20%)
Query: 290 RPGSVEPARALAVGEPVGGFLHPLRAQSGSRCALPAGG-CVFGALGGPAGRARCAPDRAC 348
+PG+ PA+A P P A+ + PA G GP R AP
Sbjct: 67 KPGAPSPAQAARPAAPRPPAPKPAAAERPAAAERPAAAPAAPGPRPGPKPAPRPAPAAPA 126
Query: 349 TVAGDGRRHPADRLGPDRPPGAPRALPQRPRRMPGGRPN--RPGHAAVAAAERHLRGSAG 406
A + P P AP A PR PG RP +PG A A + G
Sbjct: 127 PAA-------PEFTAPPSAPAAPAAAASGPR--PGARPGAPKPGGARPATPGQGQGGQVR 177
Query: 407 VAVLLPAAHLDTTRTAPAQRRGRGAAHRRLDLLRRLRLPATPHAPMRQATAGAGRPPGEL 466
+R RG R D R P QA RP G
Sbjct: 178 -----------------GERTDRGDRGDRGDRQGAAR-------PGGQAPRPGARPAGP- 212
Query: 467 HRLRRRSAVAAGSPPPARRGTP-PGIAPR-----SPAGPRSAGPAGRRRLPPALRRLTLR 520
R + GS AR P PG APR +P GPR G G+ R P
Sbjct: 213 -RPGNNPFTSGGSTGMARPQAPRPGGAPRPGGAGAPGGPRPQGAGGQDRAP--------- 262
Query: 521 APPAMSVRCRRAAVAAIPAAACRASSPTVQGRREPRRFPRRCARHPVRPPRSARGFP-VS 579
P A R R P PR A P P R P +
Sbjct: 263 ------------RPQGGPGGAPRPQGGPGGARPTPGGMPRPQAPRPGGAPGGNRPNPGMM 310
Query: 580 AVRRWCRPVPVRGSVVPRRPGTASDRPAPEPSRPGVVAGR-RAAGCAGRP 628
R P P G R PG P PG GR G AGRP
Sbjct: 311 PQRPAAGPRPGGGGPGGRGPGGGG-----RPGGPGGGGGRPGGGGFAGRP 355
Score = 42.7 bits (99), Expect = 0.007
Identities = 61/205 (29%), Positives = 71/205 (34%), Gaps = 30/205 (14%)
Query: 441 RLRLPATPHAPM--RQATAGAGRPPGELHRLRRRSAVAAG-SPPPARRGTPPGIAPRSPA 497
R PA P AP + A A RPP R A A + PA G PG P+
Sbjct: 61 RKAAPAKPGAPSPAQAARPAAPRPPAPKPAAAERPAAAERPAAAPAAPGPRPG--PKPAP 118
Query: 498 GPRSAGPAGRRRLPPALRRLTLRAPPAMSVRCRRAAVAAIPAAACRASSPTVQGRREPRR 557
P A PA PA T APP S AA A+ P R +P G R
Sbjct: 119 RPAPAAPA------PAAPEFT--APP--SAPAAPAAAASGPRPGARPGAPKPGGARPAT- 167
Query: 558 FPRRCARHPVRPPRSARGFPVS-------------AVRRWCRPVPVRGSVVPRRPGTASD 604
P + VR R+ RG A R RP R P G ++
Sbjct: 168 -PGQGQGGQVRGERTDRGDRGDRGDRQGAARPGGQAPRPGARPAGPRPGNNPFTSGGSTG 226
Query: 605 RPAPEPSRPGVVAGRRAAGCAGRPR 629
P+ RPG AG G PR
Sbjct: 227 MARPQAPRPGGAPRPGGAGAPGGPR 251
>emb|CAB77344.1| (AL939119) conserved hypothetical protein SCD8A.23 [Streptomyces
coelicolor A3(2)]
Length = 1111
Score = 64.7 bits (156), Expect = 2e-09
Identities = 147/538 (27%), Positives = 173/538 (32%), Gaps = 91/538 (16%)
Query: 1 MDAPAAVPRLATGATPGHAQARGLGRPEWRDPGTAAIDGLCADRRPASGVR--------- 51
M+ A R+ + G RG E R A G D +GV
Sbjct: 1 MEGAGAGDRVVSDVVSGGGAERGAPSGERRAGAPAGAAGAAGDVGVGAGVSVGAGVTAGR 60
Query: 52 -----PVRGDAASGDRLPV--------GLVALPGERSHRGDLGA-AVQFGGPPGAAGQPA 97
P A S R P G V LP G G A++ G G AG
Sbjct: 61 TAPTGPDEVGAPSPGRRPAALRCTGVAGAVVLPVSGRDSGTAGVGALRVPGAVGEAGAVT 120
Query: 98 I--RPGRAAADLSRRRLPVAARRPARRVAGQFRLAFGDARLHPWRGAADRPRPTALSSRP 155
+ PG AD L AA G + DAR W G + P A R
Sbjct: 121 VVAGPGSVGAD----GLAGAAGAAEGGAIGS-SVRRSDAR---WTGGSGAPPGCAEDGRA 172
Query: 156 G---------RERGGRSAGKRLAAAGAVRRVRWPIAAGGRLQLRAQPAGQAPPTALAGPA 206
G R GGR AG GAV VR P A P G+AP A P
Sbjct: 173 GGDGWAADARRWTGGRPAGAA-GTPGAVAEVRPPPVAS------PVPVGRAPDGAAVSPP 225
Query: 207 AWLAGRCHAGLGATRDLRLGSPCAGLIECTAGLESAGLRFPIDPRPATCGGGLRHARAGH 266
AG A R+G+P G +AG + P PA G G G
Sbjct: 226 DSAAGVVRAAA-----CRVGAPAVGP---SAGAAARWTGGPTGVAPAD-GEGAAGPPVGG 276
Query: 267 QPVDRPRPGRAPGRRVRCQPGGPRPGSVEPARALAVGEPVGGFLHPLRAQSGSRCALP-- 324
P+ P G A R + G P A V GG + P + GS CA
Sbjct: 277 APL--PAAGVAADRESARRTGAC------PCAASEVVPDAGGAVRPWASDPGSGCAAARC 328
Query: 325 --AGGCVFGA----LGGPAGRARCAPDR----ACTVAGDGRRHPADRLGPDRPPGAPRAL 374
A G V G AGR+ C R A + AG G P+ R GAP
Sbjct: 329 TGAPGVVCGEPVRRSPADAGRSGCPAARRVAGAASPAG-GVVPPSVRRTARCTGGAPAVA 387
Query: 375 PQRPRRMPGGRPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTRTAPAQRRGRGAAHR 434
P G P R AA+ A LPAA + A R G
Sbjct: 388 PLPAGADAGLSPGRTAGRRAGAAD---------AGPLPAASVGAGPDGRAAARWTGGVPG 438
Query: 435 RLDLLRRLRLPATPHAPMRQATAGAGRPPGELHRLRRRSAVAAGSPPPARRGTPPGIA 492
L + +P R AG G + AVAAGSPPP G P G A
Sbjct: 439 AEPLFAGAGVDGSPPLDGRAVARWAG---GAVDVELSPGAVAAGSPPPGCAGEPVGRA 493
Score = 62.8 bits (151), Expect = 6e-09
Identities = 181/612 (29%), Positives = 210/612 (34%), Gaps = 95/612 (15%)
Query: 6 AVPRLATGATPGHAQARGLGRPEWRDPGTAAIDGLCA----DRRPASGVRPVRGDAASGD 61
AVPR A GA+ G A G W G + LCA D P G R D
Sbjct: 550 AVPRPA-GASVG-AGPDGRTAVRWTG-GVPGAEPLCAGAGLDGAPLDGRAVARWTGGVPD 606
Query: 62 RLPVGLVALPGERSHRGDLGAAVQ--FGGPPGAAGQPAIRPGRAAADLSRRRLPV--AAR 117
P L A G G AV GG PGA P A A + LP AA
Sbjct: 607 AEP--LFAGAGVEGVLLPTGRAVARWTGGAPGAV------PLSAGAGVEGVLLPDGRAAA 658
Query: 118 RPARRVAGQFRLAFGDARLHPWRGAADRPRPTALSSRPGRERGGRSAGKRLAAA-GAVRR 176
R V G L G G A PRP S G + GR+A + GAV
Sbjct: 659 RWTGGVPGVV-LPVGAVVAGLLPGCAV-PRPAGASVGAGPD--GRTAVRWTGGVPGAV-- 712
Query: 177 VRWPIAAGGRLQLRAQPAGQ--APPTALAGPAAWLAGRCHAGLGATRDLRLGSPC---AG 231
P+ AG L A P+G+ A+A P A AG A GA G+P AG
Sbjct: 713 ---PLCAGAGLD-GAPPSGRRTGDAGAVASPDAPGAG---AVPGADSARWTGAPVGAGAG 765
Query: 232 LIECTAGLESAGLRFPIDPRPATCGGGLRHARAGHQPVDRPRPGRAPGRRVRCQPGGPRP 291
+ E AG A P R A+ G AG PV R R G RC G P
Sbjct: 766 VTEPWAGAALAAGAEPGSARSASADEGAVPDDAGAAPVVR----RLAGNARRCTAGDPDG 821
Query: 292 GSVEPARALAVGEPVGGFLHPLRAQSGSRCALPAGGCVFGALG--GPAGRARCAPDRACT 349
V R G + + G+ G + G G G A RAR A
Sbjct: 822 ALVSDWRGRGAAGGAGTGVTRTPREVGA-------GALAGTAGEAGAAERARWTGVAAGA 874
Query: 350 VAGDGRRHPADRLGP--DRPPGAPRALPQRPRRMPGGRPNRPGHAAVAAAERHLRGSAGV 407
V AD LGP D P PRAL P G AVAAA SAG+
Sbjct: 875 VGDVFAVGAADGLGPAADVPDAPPRALGAEPVGAVG---------AVAAAG----ASAGI 921
Query: 408 AVLLPAAHLDTTRTAPAQRRGRGAAHRRLDLLRRLRLPATPHAPMRQATAGAGRPPGELH 467
A + + GRG A R + R A+ R + A PG+
Sbjct: 922 A---------RSGATGIRCTGRGPAGRVSGVDEVCRADASKAPDSRLSPAAGSSTPGDGA 972
Query: 468 RLRRRSAVAAGSPPPARRGTPP---------GIAPRSPAGPRSAGP---AGRRRLPPALR 515
R+ S PP A TP G P A AGP A R P + R
Sbjct: 973 RVNDGSCHVGRRPPKAASATPVRSAPVARWIGGRPVQAATATGAGPGADAARSPAPGSGR 1032
Query: 516 RLTLRAPPAMSVRCRRAAVAAIPAAACRASSPTVQGRREPRRFPRRCARHPVRPPRSARG 575
P + AA AA+P S P+ R PR R P PR R
Sbjct: 1033 EPVSAGGPVSA--GESAADAAVPPPFPFPSPPS----RRPRSRSRSPTDQPSAVPRVTRD 1086
Query: 576 FPVSAVRR--WC 585
S RR WC
Sbjct: 1087 AIWSVYRRRSWC 1098
Score = 48.1 bits (113), Expect = 2e-04
Identities = 153/528 (28%), Positives = 179/528 (33%), Gaps = 106/528 (20%)
Query: 168 LAAAGAVRRVRWPIAAGGRLQLRAQPAGQAPPTALAGPAAWLAGRCHAGLGATRDLRLGS 227
+ AGA RV + +GG + R P+G+ A AG AA AG G G + +G+
Sbjct: 1 MEGAGAGDRVVSDVVSGGGAE-RGAPSGERRAGAPAG-AAGAAGDVGVGAGVS----VGA 54
Query: 228 PCAGLIECTAGLESAGLRFPIDPRPAT--CGGGLRHARAGHQPVDRPRPGRAPGRRVRCQ 285
G + G P RPA C G A A PV G A +R
Sbjct: 55 GVTAGRTAPTGPDEVGAPSP-GRRPAALRCTGV---AGAVVLPVSGRDSGTAGVGALRV- 109
Query: 286 PGG----------PRPGSV-EPARALAVGEPVGGFLHPLRAQSGSRCALPAGGCVFGALG 334
PG PGSV A A G GG + +S +R G G
Sbjct: 110 PGAVGEAGAVTVVAGPGSVGADGLAGAAGAAEGGAIGSSVRRSDARWT--------GGSG 161
Query: 335 GPAGRARCAPDRACTVAGDGRRHPADRLGPDRPPGA-------------PRALPQRPRRM 381
P G CA D GDG A R RP GA P A P R
Sbjct: 162 APPG---CAEDGRA--GGDGWAADARRWTGGRPAGAAGTPGAVAEVRPPPVASPVPVGRA 216
Query: 382 PGGRPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDT------TRTAPAQRRGRGAAHRR 435
P G P +A A R G + P+A T APA G GAA
Sbjct: 217 PDGAAVSPPDSA-AGVVRAAACRVGAPAVGPSAGAAARWTGGPTGVAPAD--GEGAAGPP 273
Query: 436 LDLLRRLRLPATPHAPMRQATAGAGRPPGELHRLR-------RRSAVAAGSPPPARRGT- 487
+ LPA A R++ G P + R A GS A R T
Sbjct: 274 VG---GAPLPAAGVAADRESARRTGACPCAASEVVPDAGGAVRPWASDPGSGCAAARCTG 330
Query: 488 PPGIAPRSPAGPRSAGPAGRRRLPPALRRLTLRAPPAMSV---------RCRRAA--VAA 536
PG+ P RS AGR P A RR+ A PA V RC A VA
Sbjct: 331 APGVVCGEPVR-RSPADAGRSGCPAA-RRVAGAASPAGGVVPPSVRRTARCTGGAPAVAP 388
Query: 537 IPAAACRASSPTVQGRREPRRFPRRCARHPVRPPRSARGFPVSAVRRWCRPVP------- 589
+PA A SP GR RR A P+ G A RW VP
Sbjct: 389 LPAGADAGLSP---GRTAGRRAGAADAG-PLPAASVGAGPDGRAAARWTGGVPGAEPLFA 444
Query: 590 ---------VRGSVVPRRPGTASDRPAPEPSRPGVVAGRRAAGCAGRP 628
+ G V R G A D E S V AG GCAG P
Sbjct: 445 GAGVDGSPPLDGRAVARWAGGAVD---VELSPGAVAAGSPPPGCAGEP 489
>emb|CAB07541.1| (Z93338) hypothetical protein [Pimelobacter simplex]
Length = 545
Score = 64.7 bits (156), Expect = 2e-09
Identities = 142/498 (28%), Positives = 175/498 (35%), Gaps = 118/498 (23%)
Query: 115 AARRPARRVAGQFRLAFGDARLHPWRGAADRPRPTALSSRPGRERGGRSAGKRLAAAGAV 174
+A R RR +G+ R G +R R R R P + R S+G+ A A +
Sbjct: 70 SASRSGRRSSGRRRCCPGGSR----RRCRRRHRV-----EPAQGRVNASSGRPAARASSA 120
Query: 175 RRVRWPIAAGGRLQLRAQPAGQAPPTALAGPAAWLAGRCHAGLGATRDLRLGSPCAGLIE 234
R AG R R P G AG A+ A C G AG +
Sbjct: 121 R-----CRAGARSPRRTTPGGGPS----AGRASRRARSC-CGTTVEDQPHRADRVAGPVA 170
Query: 235 CTAGLESAGLRFPIDPRPATCGGGLRHARAGHQPVDRPRPGRAPGRRVRCQPGGPRPGSV 294
GL + + PA + H RAG + + + R G+R GG PG V
Sbjct: 171 AEHGLPEGHVVGRLVDEPAAVA--VDHDRAGQRALGQQHLRRPAGQR---GDGGEPPGLV 225
Query: 295 EPARALAVGEPVGGFLHPLRAQSGSRCALPAGGCVFGALG-----------GPAGRARCA 343
+ G +GG L + AL A V LG PAGR A
Sbjct: 226 HQRHS---GAHLGGELDRVAG-----VALVAQAPVVEELGLVAVPHVHVVVEPAGREDDA 277
Query: 344 PDRAC-TVAGDGRRHPADR------------LGPDRPPGAPRALPQRPR-RMPGGRPNRP 389
P R A H AD L PDR GA RA+ Q R R+P G+
Sbjct: 278 PARGHGDPAAVALEHRADHPVALGDQLDQRGLAPDRDAGAQRAVEQPGRERLPAGQVVAA 337
Query: 390 GHAAV----AAAERHLRGSAGVAVLLPAAHLDTTRTA------------PAQRRGRGAAH 433
H A AA+ + AG+A H RT P QR G A H
Sbjct: 338 DHHAADALSGAAQDARQALAGLA--RDQVHPLVVRTGDRHRDRCLDDARPQQRPGL-AQH 394
Query: 434 RRLDLLRRLRLPATPHA----PMRQATAGAGRPPGELHRLRRRSAVAAGSPPPARRGTPP 489
RR++ RL L A P +R A RP H+L RR PP P
Sbjct: 395 RRVE---RLALDAAPRGVAARQLRVVVGVAARP----HQLERRR-------PPQH---PD 437
Query: 490 GIAPRSPAGPRSAGPAGRRRLPPALRRLTLRAPPAMSVRCRRAAVAAIPAAACRASSPTV 549
G+ P AGP+GRR PP P S R R ACRAS +V
Sbjct: 438 GLGA-VPQERLPAGPSGRRHPPP---------PRGRSRRAR----------ACRASRASV 477
Query: 550 Q-GRREPRRFPRRCARHP 566
G RR P R P
Sbjct: 478 SAGLAASRRRPERAVEPP 495
>gb|AAK53451.1| (AY032926) putative PHA synthase [Streptomyces aureofaciens]
Length = 813
Score = 62.8 bits (151), Expect = 6e-09
Identities = 170/634 (26%), Positives = 192/634 (30%), Gaps = 129/634 (20%)
Query: 80 LGAAVQFGGPPGAAGQPAIRP------GRAAADLSRRRLPVAARRPARRVAGQFRLAFGD 133
L A GG P AA R G A + R RLP A R +G
Sbjct: 203 LAAVAAVGGVPAAALPAGWRVLAYLLCGLALTAVVRSRLPGHAARGVLAASGAVVAGALV 262
Query: 134 ARLHP---------------WRGAADRPRPTALSSRPGRERGGRSAGKRLAA--AGAVRR 176
L P W G D R S+ P E L A AG R
Sbjct: 263 WALPPLAAVLLGPVTVLSDVWAGTPDGFRSALGSTLPWSELAAAPVVLALVAGHAGGERN 322
Query: 177 VRWPIAAGGRLQLRAQPAGQAPP--TALAGPAAWLAGRCHAGLGATRDLRLGSPCAGLIE 234
RWP R + A + PP T P AGR R +RL P
Sbjct: 323 RRWPSVVRLRRRWPVLLARRRPPGSTGSGSPGHGCAGRGRGRCAVARLVRLVRPA----R 378
Query: 235 CTAGLESAGLRFPIDPRPATCGGGLRHARAGHQPVDRPRPGRAPGRRVR---------CQ 285
C A R GG AR G P R GRAP R +
Sbjct: 379 CGGRWSRAAFRGDAARGRRRGRGG---ARLGGPPAGRRAAGRAPRARAGRGDGSGGRPAR 435
Query: 286 PGGPRPGSVEPARALAVGEPVGGFLHPLRAQSGSRCALPAG---GCVFGA--LGGPAGRA 340
PGGP R G+ GGF + G R A AG G V G GG R
Sbjct: 436 PGGPG-WRRRAGRDGDAGDRSGGF----GGRGGERRAAVAGVRGGLVRGVRRAGGAVRRG 490
Query: 341 RCAPDRACTVAG-DGRRHPADRLGPDRPPGAPRALPQRPRRMPGGRP--NRPGHAAVAAA 397
R A R G GRR D G P +PG RP RP AA A A
Sbjct: 491 RSAGGRRGAACGVRGRRGGLGHR--DHGVGGP---------VPGARPARGRPADAAGAGA 539
Query: 398 ERHLRGSAGVAVLLPAAHLDTTRTAPAQRRGRGAAHRRLDL--LRRLRLPATPHAPMRQA 455
+ RG+ A D + A+RRG R + +R A
Sbjct: 540 DGAARGTTAAEPGGLARGADGS-AGRARRRGARGVRRAVPGPGAGAVRGAGGGDGGAAGA 598
Query: 456 TAGAGRP--------------------PGELH------RLRRRSAVAAGSP--------- 480
AG G P PG +H R R AA P
Sbjct: 599 AAGGGLPGGDAVRAGHVGAAGGLGGVVPGGVHAAGDGARAAGRCGAAAPGPGGLVVDGVR 658
Query: 481 ---------PPARRGTPPGIAPRSPAGPRSAGPAGRRRLPPALRRLTLRAPPAMSVRCRR 531
P R PG+A AG AG RR PPA R A + R R
Sbjct: 659 AGARGDAAAQPGGRLDRPGLAQAVAAGDGGAGDHPARRAPPAPGAAAARRDGAGTGRPAR 718
Query: 532 AAV-------AAIPAAACRASSPTVQGRREPRRFPRRCARHPVRPPRSARGFPVSAVRRW 584
A A P A R V G R R A RPP R AV R
Sbjct: 719 AGAVRGAGRGCAPPLAPARPGRAVVAGGRSDVR-----AAAAGRPPSEGRA-GADAVSR- 771
Query: 585 CRPVPVRGSVVPRRPGTASDRPAPEPSRPGVVAG 618
G+ V PG A A + +RP V G
Sbjct: 772 ---ARSGGAQVTASPGRAPVAWATQRARPSVRVG 802
Score = 52.0 bits (123), Expect = 1e-05
Identities = 128/392 (32%), Positives = 138/392 (35%), Gaps = 93/392 (23%)
Query: 44 RRPASGVRPVRGDAASGDRLPVGLVALPGERSHRGDLGAAVQFGGPPGAAGQPAIRPGRA 103
R A GVR RG D G V PG R RG A G A G A PG
Sbjct: 497 RGAACGVRGRRGGLGHRDHGVGGPV--PGARPARGRPADAAGAGADGAARGTTAAEPGGL 554
Query: 104 A--ADLSRRRLPVAARRPARRVAGQFRLAFGDARLHPWRGAADRPRPTALSSRPGRERGG 161
A AD S R A RR AR V R A P A+ R GG
Sbjct: 555 ARGADGSAGR---ARRRGARGV----------------RRAVPGPGAGAV-----RGAGG 590
Query: 162 RSAGKRLAAAGAVRRVRWPIAAGGRLQLRAQPAGQAPPTALAGPAAWLAGRCHAGLGATR 221
G AAGA AAGG L P G A G A L G G+ A
Sbjct: 591 GDGG----AAGA--------AAGGGL-----PGGDAVRAGHVGAAGGLGGVVPGGVHAAG 633
Query: 222 DLRLGSPCAGLIECTAGLESAGLRFPIDPRPATCGGGLRHARAGHQPVDRPRPGRAPGRR 281
D G +AG P P GGL VD R G A G
Sbjct: 634 D---------------GARAAGRCGAAAPGP----GGL--------VVDGVRAG-ARG-D 664
Query: 282 VRCQPGG--PRPGSVEPARALAVGEPVGGFLHPLRAQSGSRCALPAGGCVFGALGGPAGR 339
QPGG RPG A+A+A G+ G HP +R A PA G G AG
Sbjct: 665 AAAQPGGRLDRPGL---AQAVAAGDGGAGD-HP------ARRAPPAPGAAAARRDG-AGT 713
Query: 340 ARCAPDRACTVAGDGRRHPADRLGPDRPPGAPRALPQRP-RRMPGGRPNRPGHAAVAAAE 398
R P RA V G G R A L P RP A A + R GRP G A A
Sbjct: 714 GR--PARAGAVRGAG-RGCAPPLAPARPGRAVVAGGRSDVRAAAAGRPPSEGRAGADAVS 770
Query: 399 RHLRGSAGVAVLLPAAHL--DTTRTAPAQRRG 428
R G A V A + T R P+ R G
Sbjct: 771 RARSGGAQVTASPGRAPVAWATQRARPSVRVG 802
Score = 51.6 bits (122), Expect = 1e-05
Identities = 78/231 (33%), Positives = 88/231 (38%), Gaps = 38/231 (16%)
Query: 9 RLATGATPGHAQARGLGRPEWRDPGTAAIDGLCADRR--PASGVRPVRGDAASGDRLPVG 66
R T A PG GL R G A G RR P G VRG A GD G
Sbjct: 544 RGTTAAEPG-----GLARGADGSAGRARRRGARGVRRAVPGPGAGAVRG-AGGGDGGAAG 597
Query: 67 LVA---LPGERSHR-GDLGAAVQFGGP-PG---AAGQPAIRPGRAAA-----------DL 107
A LPG + R G +GAA GG PG AAG A GR A +
Sbjct: 598 AAAGGGLPGGDAVRAGHVGAAGGLGGVVPGGVHAAGDGARAAGRCGAAAPGPGGLVVDGV 657
Query: 108 SRRRLPVAARRPARRV-----AGQFRLAFGDARLHPWR------GAADRPRPTALSSRPG 156
AA +P R+ A G A HP R GAA R A + RP
Sbjct: 658 RAGARGDAAAQPGGRLDRPGLAQAVAAGDGGAGDHPARRAPPAPGAAAARRDGAGTGRPA 717
Query: 157 RERGGRSAGKRLAAAGAVRRVRWPIAAGGRLQLRAQPAGQAPPTALAGPAA 207
R R AG+ A A R + AGGR +RA AG+ P AG A
Sbjct: 718 RAGAVRGAGRGCAPPLAPARPGRAVVAGGRSDVRAAAAGRPPSEGRAGADA 768
>emb|CAC32349.1| (AL939118) putative bifunctional protein (histidine kinase and
regulator) [Streptomyces coelicolor A3(2)]
Length = 1463
Score = 62.4 bits (150), Expect = 8e-09
Identities = 144/563 (25%), Positives = 194/563 (34%), Gaps = 92/563 (16%)
Query: 2 DAPAAVPRLATGATPGHAQARGLGRPEWRDPGTAAIDGLCADRRPASGVRPVRGDAASGD 61
D PA +P A A G GR R T+ + + GV
Sbjct: 675 DVPAPLPVPAQAGPGAGAGTGGTGRRRGRPAETSGAEVAGVPQAALGGVSE--------- 725
Query: 62 RLPVGLVALPGERSHRGDLGAA-VQFGGPPGAAGQPAIRPGRAAADLSRRR-LPVAARRP 119
G V + GE H G A+ GG G PA RA D + LP A P
Sbjct: 726 ----GAVVMAGE--HGGGAAASNTGLGGTVPPQGVPAPTGRRAGQDGGEQHALPPAL--P 777
Query: 120 ARRVAGQFRLAF-GDARLHPWRGAADRP---RPTALSSRPGRERGGRSAGKRLAA---AG 172
A+ AG+ A D ADRP R AL+S R +A +++ A AG
Sbjct: 778 AQ--AGESNPADPADPE------TADRPTGRRRRALASANERAAAQEAAPRQVFALPPAG 829
Query: 173 AVRRVRWPIAAGGRLQLRAQPAGQAPPTALAGPAAWLAGRCHAGLGATRDLRLGSPCAGL 232
A P R Q GQ P + P G A D P G
Sbjct: 830 ADADADRPSEGAATAPGRVQEPGQVQPGRVRVP----------GPAAPGD---AVPDEGR 876
Query: 233 IECTAGLESAGLRFPIDPRPATCGGGLRHARAGHQPVDRPRPGRAPGR-RVRCQPGGPRP 291
+ + +S P P PA G R +P D P PG+A G+ + + Q G
Sbjct: 877 HDAVSHDQSED-HTPPQPHPAEAPTGRRRRAGAARPADEPVPGQAQGQGQGQGQGQGQGQ 935
Query: 292 GSVEPARALAV----GEPVGGFLHPLRAQSGSRCALPAGGCVFGALGGPAGRARCAP--- 344
G + A A + PV G P A +G+ P PA + AP
Sbjct: 936 GQAQSAPAQGIPVQGAPPVQGAPVPAPAATGTEAQAPRPAESGADTAAPAAPGQPAPAPQ 995
Query: 345 --DRACTVAGDGRRHPADRLGPDRPPG-----APRALPQRPRRMPGGRPNR-----PGHA 392
A + G G P G PPG A A P P+ +P P+R P +A
Sbjct: 996 PWPAAADIQGAGAPVPP---GSPVPPGAAPAPAAPAAPAAPQGVPATTPSRGTPLPPENA 1052
Query: 393 AVAAAERHLRGSAGVAVLLPAAHLDTTRTAPAQRRGRGAAHRRLDLLRRLRLPATPHAPM 452
A + L A V + R + G+G R + +++ P+ AP
Sbjct: 1053 PAPRAAQPLPAEASAPV---DPNSTQGRAISVRTLGQGVPFNRQAV--QVQQPSATPAPH 1107
Query: 453 RQATAGAGRPPGELHRLRRRSAVAAGSPP-PARRGTPPGIAPRSPAGPRSAGPAGRRRLP 511
+ G RRR G+PP PA GT P P PA + G +++ P
Sbjct: 1108 QPGGGG-----------RRRK---LGTPPDPAAGGTAPSARPHPPA-EQPPGAQPKKQAP 1152
Query: 512 PALRRLTLRAPPAMSVRCRRAAV 534
P R + P + R A V
Sbjct: 1153 PQPPRQSPDQPSLAGGQGRLAPV 1175
Score = 42.4 bits (98), Expect = 0.009
Identities = 133/526 (25%), Positives = 165/526 (31%), Gaps = 96/526 (18%)
Query: 150 ALSSRPGRERGGRSAGKRLAAAGAVRRVRWPIAAGGRLQLRAQPAGQ--------APPTA 201
A+ P GG + A G V VR P + GGR + R AP A
Sbjct: 571 AVPDAPADSAGG------VGAQGTVA-VREPASGGGRRRARRASVDAFLESGVAGAPGDA 623
Query: 202 LAGPAAWLAGRCHAGLGATRDLRLGSPCAGLIECTAGLESAG------------LRFPID 249
AGP A G R + G+ +E AG E + + P+
Sbjct: 624 GAGPEA--ENSAPTGRRRRRAAQAGAQAGAGVEAGAGAEISAQGQGQGQGQGGDVPAPL- 680
Query: 250 PRPATCGGGLRHARAGHQPVDRPRPGRAPGRRVRCQPGGPRPGSVEPARALAVGEPVGGF 309
P PA G G A G R RP G V P G E A +A GE GG
Sbjct: 681 PVPAQAGPGAG-AGTGGTGRRRGRPAETSGAEVAGVPQAALGGVSEGAVVMA-GEHGGG- 737
Query: 310 LHPLRAQSGSRCALPAGGCVFGA---LGGPAGRARCAPDRACTVAGDGR-RHPADRLGPD 365
+ +G +P G G G P AG+ PAD D
Sbjct: 738 --AAASNTGLGGTVPPQGVPAPTGRRAGQDGGEQHALPPALPAQAGESNPADPADPETAD 795
Query: 366 RPPGAPRALPQRPRRMPGGRPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTRTAPAQ 425
RP G R RR R AA AA R + LP A D A A
Sbjct: 796 RPTG-------RRRRALASANERA--AAQEAAPRQV-------FALPPAGAD----ADAD 835
Query: 426 RRGRGAAHRRLDLLRRLRLPATPHAPMRQATAGAGRPPGELHRLRRRSAVAAGSPPPARR 485
R GAA R++ P P R G P + R AV S +
Sbjct: 836 RPSEGAATAP----GRVQEPGQVQ-PGRVRVPGPAAPGDAVPDEGRHDAV---SHDQSED 887
Query: 486 GTPPGIAPRSPAGPRSAGPAGRRRLPPALRRLTLRAPPAMSVRCR---------RAAVAA 536
TPP P + P GRRR A R P + + + +
Sbjct: 888 HTPPQPHP-------AEAPTGRRRRAGAARPADEPVPGQAQGQGQGQGQGQGQGQGQAQS 940
Query: 537 IPAAACRAS-SPTVQGRREPRRFPRRCARHPVRPPRS--------ARGFPVSAVRRWCRP 587
PA +P VQG P RP S A G P A + W
Sbjct: 941 APAQGIPVQGAPPVQGAPVPAPAATGTEAQAPRPAESGADTAAPAAPGQPAPAPQPWPAA 1000
Query: 588 VPVRGSVVPRRPGTASDRPAPEPSRPGVVAGRRAAGCAGRPRRAAS 633
++G+ P PG+ P P + P A A G P S
Sbjct: 1001 ADIQGAGAPVPPGS----PVPPGAAPAPAAPAAPAAPQGVPATTPS 1042
>dbj|BAC69248.1| (AP005027) putative oxidoreductase [Streptomyces avermitilis
MA-4680]
Length = 719
Score = 62.0 bits (149), Expect = 1e-08
Identities = 177/587 (30%), Positives = 197/587 (33%), Gaps = 156/587 (26%)
Query: 4 PAAVPRLATGATPGH-------AQARGLGRPEWRDPGTAAIDGLCADRRPASGVRPVRGD 56
P VP L GA G A+ R L +PE R G A G RP G V
Sbjct: 188 PGGVP-LPAGAARGDGPLGQRPARRRRL-QPEHRVGGRRA--GPAVLPRPGLGAGAV--- 240
Query: 57 AASGDRLPV-GLVALPGERSHRGDLGAAVQFGGPPGAAGQPAIRPGRA--AADLSRRRLP 113
A G RL V G PG R H G G R R +AD+ RLP
Sbjct: 241 GARGRRLRVQGGAPAPGGRRH--------------GRNGSAPPRQSRTDPSADVLAGRLP 286
Query: 114 VAARRPARRVAGQFRLAFGDARLHPWRGAADRPRPTALSSRPGRERGGRSAGKRLAAAGA 173
Q A AR P R AA P A P +R +R A
Sbjct: 287 ------------QPHGAADQARCRPRRAAAGLRPPGA---EPHVDRARVRRVERRPRPCA 331
Query: 174 VRRVRWPIAAGGRLQLRAQPAGQAPPTALAGPAAWLAGRCHAGLGATRDLRLGSPCAGLI 233
VRR R P + R RA P A AG A G AG+GA R
Sbjct: 332 VRRRRAPHHSSPRTARRADP----DLDACAGRGA---GLVRAGVGARR------------ 372
Query: 234 ECTAGLESAGLRFPIDPRPATCGGGLRHARAGHQPVDRPRPGRA-PGRRVRCQPGGPRPG 292
T G G P + G +R A V +P+ R G R + + GGPR
Sbjct: 373 --TRGEVRPGPDRPARAQRTRGGPCVRAA------VQQPQCARLLRGGRPQVRLGGPRSA 424
Query: 293 SVE-PARALAVGEPVGGFLHPLRAQSGSRCALPAGGCVFGALGGPAGRARCAPDRACTVA 351
S P ALA + GG PL G R P G GG G R
Sbjct: 425 SRRAPRGALAARDRYGGRHVPL----GGR---PVHG------GGDRGGGRHL--HRADQR 469
Query: 352 GDGRRHPADRLGPDRPPGAPRALPQRPRRMPGGRP--------------------NRPGH 391
G R DR PDR GA R RPR G RP R G
Sbjct: 470 GGHRDRSTDRADPDRRGGAGRRAGTRPRAHRGQRPRSGDVRRRLDGHPLLGLGGDGRGGR 529
Query: 392 AAVAA--AERHLRG----------------SAGVAVLLPAA--------HLDTTRTAPAQ 425
AA AA RH G G A+L A H TRTA A+
Sbjct: 530 AAGAAGPGRRHSAGGDHRTVGHHRGRRRPREEGTALLRSAVRRGRGRHHHRRGTRTADAR 589
Query: 426 --RRG--RGAAHRRLDLLRRLRLPATPHAPMRQATAG--AGRPPGE------LHRLRRRS 473
RRG R AHR + RR L + H R G GRP L R RRR
Sbjct: 590 HLRRGPDRQPAHRAQPVPRRHGL-GSVHGAARGGRQGPFLGRPRRRRLRGLPLRRERRRP 648
Query: 474 AV---AAGSPPPARRGTPPG----IAPRSPAGPRSAGPAGRRRLPPA 513
+ G P P R G G R G R G A RR PPA
Sbjct: 649 SARGGLGGGPRPGRPGRDQGHRRDRRGRWRGGDRQRGLARDRRTPPA 695
Score = 42.4 bits (98), Expect = 0.009
Identities = 61/199 (30%), Positives = 73/199 (36%), Gaps = 36/199 (18%)
Query: 450 APMRQATAGAGRPPGELHRLRRRSAVAAGSPPPARRGTPPGIAPRSPA----GPRSAGPA 505
+P+ QA A G EL A+ A TP G+ + A GP PA
Sbjct: 158 SPLVQAEAVKGDVEAEL--------AASDVVVDAEYATPGGVPLPAGAARGDGPLGQRPA 209
Query: 506 GRRRLPPALRRLTLRAPPAMSVRCRRAAVAAIPAAACRASSPTVQGRR------EPRRFP 559
RRRL P R V RRA A +P A + +GRR P
Sbjct: 210 RRRRLQPEHR-----------VGGRRAGPAVLPRPGLGAGAVGARGRRLRVQGGAPAPGG 258
Query: 560 RRCARHPVRPPRSARGFPVSAVRRWCRPVP----VRGSVVPRRPGTASDRPAPEP--SRP 613
RR R+ PPR +R P + V P P + PRR P EP R
Sbjct: 259 RRHGRNGSAPPRQSRTDPSADVLAGRLPQPHGAADQARCRPRRAAAGLRPPGAEPHVDRA 318
Query: 614 GV-VAGRRAAGCAGRPRRA 631
V RR CA R RRA
Sbjct: 319 RVRRVERRPRPCAVRRRRA 337
>emb|CAE07113.1| (BX569690) possible N-terminal part of IF-2 [Synechococcus sp. WH
8102]
Length = 496
Score = 61.6 bits (148), Expect = 1e-08
Identities = 121/463 (26%), Positives = 154/463 (33%), Gaps = 83/463 (17%)
Query: 89 PPGAAGQPAI--RPGRAAADLSRRRLPVAARRPARRVAGQFRLAFGDARLHPWRGAADRP 146
P A +PA +P +A+ + P A PAR + A+ P AA P
Sbjct: 87 PAPAQAKPATPAKPAASASKPAAPAKPAAPAAPARPAPARAAAPAAPAKPVPRPAAAPPP 146
Query: 147 RPT-----ALSSRPGRERGGRSAGKRLAAAGAVRRVRWPIAAGGRLQLRAQPAGQAPPTA 201
RP +S SA + A A V P A + A+P P A
Sbjct: 147 RPQPAKPEVVSKPKPATPATASAPSKPTAPPARPTVVKPTVAKPTV---AKPTVAKPTVA 203
Query: 202 LAGPAAWLAGRCHAGLGATRDLRLGSPCAGLIECTAGLESAGLRFPIDPRPATCGGGLRH 261
PA A + A P A + PRPA
Sbjct: 204 KPAPAKPAAAKPAPARPAPARPAPARPSADQPK---------------PRPAAAPSRPTP 248
Query: 262 ARAGHQPVDRPRPGRAPGRRVRCQPGGP-RPGSVEPARALAVGEPVGGFLHPLRAQSGSR 320
AG +P RPG AP +PG P RPG+ PAR A P++A
Sbjct: 249 G-AGQKPQIVSRPGSAP------RPGAPTRPGAPAPARPGA----------PVKA----- 286
Query: 321 CALPAGGCVFGALGGPAGRARCAPDRACTVAGDGRRHPADRLGPDRPPGAPRALPQRPRR 380
GP R P+ G+ P R G P + PQRP
Sbjct: 287 --------------GPPTRPTPRPELV------GKPVPR-RPGTGAPTRSGAGAPQRPGT 325
Query: 381 MPGGRPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTT-----RTAPAQRRGRGAAHRR 435
RP PG A G+ V P ++ R AP R G G+ R
Sbjct: 326 GVPQRPGSPGRPTRPGAPARSGGNTLELVGKPIRRDGSSTGSGGRPAPPTRPGAGSPQRP 385
Query: 436 LDLLRRLRLPATPHAPMRQATAGAGRPPGELHRLRRRSAVAAG-----SPPPARRGTPPG 490
+ +R P P + Q GRP R R + AG + PP R TPP
Sbjct: 386 -GMPSGMRKPVAP-GELMQLQKPVGRPAAPAPR-RPDAPTKAGDGAGTATPPVARPTPP- 441
Query: 491 IAPRSPAGPRSAGPAGRRRLPPALRRLTLRAPPAMSVRCRRAA 533
APR P G R P G+RRL P +VR R +A
Sbjct: 442 TAPRRPGGFRPGAPGGQRRLDVRTGMTAPSWKPCAAVRHRSSA 484
Score = 59.3 bits (142), Expect = 7e-08
Identities = 94/360 (26%), Positives = 124/360 (34%), Gaps = 46/360 (12%)
Query: 271 RPRPGRAPGRRVRCQPGGPRPGSVEPARALAVGEPVGGFLHPLRAQSGSRCALPAGGCVF 330
+P PG+A + P P P +PA +P A S S+ A PA
Sbjct: 69 KPAPGKAILSVKKAAPAKPAPAQAKPA---TPAKP---------AASASKPAAPA----- 111
Query: 331 GALGGPAGRARCAPDRACTVAGDGRRHPADRLGPDRPPGAPRALPQRPRRMPGGRPNRPG 390
PA AR AP RA A + P RP AP PQ + +P
Sbjct: 112 -KPAAPAAPARPAPARAAAPAAPAKPVP-------RPAAAPPPRPQPAKPEVVSKPKPAT 163
Query: 391 HAAVAAAERHLRGSAGVAVLLPAAHLDTTRTAPAQRRGRGAAHRRLDLLRRLRLPATPHA 450
A +A + A V+ P T P + A PA P A
Sbjct: 164 PATASAPSKPTAPPARPTVVKPTVAKPTV-AKPTVAKPTVAKPAPAKPAAAKPAPARP-A 221
Query: 451 PMRQATAGAGRPPGELHRLRRRSAVAAGSPPPARRGTPPGIAPRSPAGPRSAGPAGRRRL 510
P R A A RP + + R AA S P G P I R + PR P
Sbjct: 222 PARPAPA---RPSADQPKPR---PAAAPSRPTPGAGQKPQIVSRPGSAPRPGAPTRPGAP 275
Query: 511 PPALRRLTLRAPPAMSVRCRRAAVAAIPAAACRASSPTVQGRREPRRFPRRCARHPVRPP 570
PA ++A P R V +PT G P+R + P P
Sbjct: 276 APARPGAPVKAGPPTRPTPRPELVGKPVPRRPGTGAPTRSGAGAPQRPGTGVPQRPGSPG 335
Query: 571 RSARGFPVSAVRRWCRPVPVRGSVVPRRPGTAS---DRPAP-------EPSRPGVVAGRR 620
R R P + R + + G + RR G+++ RPAP P RPG+ +G R
Sbjct: 336 RPTR--PGAPARSGGNTLELVGKPI-RRDGSSTGSGGRPAPPTRPGAGSPQRPGMPSGMR 392
Score = 55.5 bits (132), Expect = 1e-06
Identities = 79/280 (28%), Positives = 103/280 (36%), Gaps = 53/280 (18%)
Query: 390 GHAAVAAAERHLRGSAGVAVL----------LPAAHLDTTRTAPAQRRGRGAAHRRLDLL 439
G+ + A+A + + G A+L PA T PA + AA +
Sbjct: 57 GNGSKASAPAPAKPAPGKAILSVKKAAPAKPAPAQAKPATPAKPAASASKPAAPAK---- 112
Query: 440 RRLRLPATPHAPMRQATAGAGRPPGELHRLRRRSAVAAGSPPPARRGTPPGIAPRSPAGP 499
PA P AP R A A A P + R +A P PA+ P ++ PA P
Sbjct: 113 -----PAAPAAPARPAPARAAAPAAPAKPVPRPAAAPPPRPQPAK---PEVVSKPKPATP 164
Query: 500 RSAGPAGRRRLPPA---LRRLTLRAPPAMSVRCRRAAVA----AIPAAACRASSPTVQGR 552
+A + PPA + + T+ P + VA A PAAA A + R
Sbjct: 165 ATASAPSKPTAPPARPTVVKPTVAKPTVAKPTVAKPTVAKPAPAKPAAAKPAPARPAPAR 224
Query: 553 REPRR----FPR-RCARHPVRPPRSARGFPVSAVRRWCRP---VPVR-GSVVPRRPGT-- 601
P R P+ R A P RP A P R P P R G+ P RPG
Sbjct: 225 PAPARPSADQPKPRPAAAPSRPTPGAGQKPQIVSRPGSAPRPGAPTRPGAPAPARPGAPV 284
Query: 602 ---ASDRPAPEPS--------RPGVVAGRRAAGCAGRPRR 630
RP P P RPG A R+ AG P+R
Sbjct: 285 KAGPPTRPTPRPELVGKPVPRRPGTGAPTRSG--AGAPQR 322
>gb|AAK62517.1| (AY034092) putative hydroxyproline-rich protein [Micrococcus sp.
28]
Length = 406
Score = 60.8 bits (146), Expect = 2e-08
Identities = 96/329 (29%), Positives = 116/329 (35%), Gaps = 50/329 (15%)
Query: 333 LGGPAGRARCAPDRACTVAGDGRRHPADRLGPDRPPGAPRALPQRPRRMPGGRP-NRPGH 391
L +G +C P G P+ R P RP AP A+P + P RP RP H
Sbjct: 74 LSRSSGPDQCRPSSPAHQQRSGPHGPSARPWPARPDDAPCAVPAWSSKHPWWRPRQRPEH 133
Query: 392 ------AAVAAAERHLRGSAGVAVLLPAAHLDTTRTAPAQRRGRGAAHRRLDLLRRLRLP 445
+A +A H AG H+ P+ R R AHR + P
Sbjct: 134 PCSRCGSARSARTSHATPPAGPT----QGHVPELALRPSP-RDRHPAHRNRRPTPQAE-P 187
Query: 446 ATPHAPMRQATAGAGRPPGELHRLRRRSAVAAGSPPPARRGTPPGIAPRSP----AGPRS 501
A H+P R+ G+ R E H R G P P PR+P +
Sbjct: 188 APHHSPRRR--PGSPRKRRERHPTARHPKPGRGPRRPQGTRHQPEQRPRTPRRRWRPNQP 245
Query: 502 AGPAGRRRLP----PALRRLTLRA--------PPAMSVRCRRAAVAAIP-AAACRASSPT 548
A PA R R P P R T RA PP + + CRR P R SPT
Sbjct: 246 ARPASRPRPPSRQRPGQLRRTARASRHRPMPHPPEL-LPCRRCRQLHRPRTRRHRHRSPT 304
Query: 549 VQG--RREPRRFPRRC-------ARHPVRPPRSARGFPVSAVRRWC-----RPVPVRGSV 594
R P R P C RHP P +R P RW RP P R
Sbjct: 305 HHPGLRPHPPRRPPHCWETPRLSHRHPPADPPPSR--PWRRPSRWLHRPRHRPGPRRSGK 362
Query: 595 VPRRPGTASDRPAPEPSRPGVVAGRRAAG 623
PRR +S A P P GR+ G
Sbjct: 363 RPRRTCPSSSE-AARPGPPRWPTGRQPPG 390
Score = 44.7 bits (104), Expect = 0.002
Identities = 59/200 (29%), Positives = 70/200 (35%), Gaps = 40/200 (20%)
Query: 448 PHAPMRQATAGAGRPPGELHRLRRRSAVAAGSPPPARRGTPPGIAPRSPAGPRSAGPAGR 507
PH P+R T R P R +A+ A PP +R P P SPA + +GP G
Sbjct: 43 PHRPLRPGTV---RFPNTPCWGSRTAALTADPPPLSRSSGPDQCRPSSPAHQQRSGPHGP 99
Query: 508 RRLP-PALRRLTLRAPPAM---------------------SVRCRRAAVAAIPAAACRAS 545
P PA A PA S R R + A PA +
Sbjct: 100 SARPWPARPDDAPCAVPAWSSKHPWWRPRQRPEHPCSRCGSARSARTSHATPPAGPTQGH 159
Query: 546 SPTVQGRREPR-RFPRRCARHPV-----RPPRSARGFPVSAVRRWCR------PVPVRGS 593
P + R PR R P R P P S R P S +R R P P RG
Sbjct: 160 VPELALRPSPRDRHPAHRNRRPTPQAEPAPHHSPRRRPGSPRKRRERHPTARHPKPGRG- 218
Query: 594 VVPRRPGTASDRPAPEPSRP 613
PRRP +P P P
Sbjct: 219 --PRRPQGTRHQPEQRPRTP 236
>gb|AAM54086.1|AF453501_12 (AF453501) transcriptional regulator [Actinosynnema pretiosum
subsp. auranticum]
Length = 1117
Score = 60.1 bits (144), Expect = 4e-08
Identities = 164/592 (27%), Positives = 202/592 (34%), Gaps = 93/592 (15%)
Query: 6 AVPRLATGATPGHAQARGLGRPEWRDPGTAAIDGLCADRRPASGVRPVRGDAASGDRLPV 65
A+P +A A G A + D G A+ L A R + V + D P+
Sbjct: 63 ALPEVAEVAAGGGALLVAVDDAGGADVG--ALFDLVAWARRTTAVLALTDLPRLPDDDPL 120
Query: 66 GLVA-LPGER-----SHRGDLGAAVQFGGP-PGAAGQPAIRPGRAAADLSRRRLPVAARR 118
G VA PG R + AA+ G P P G PA+ G A ++ P AA R
Sbjct: 121 GAVARTPGALVLDLPPLRPETTAALLGGSPWPVTGGNPALVRGLAHDLVAGEAGPGAAYR 180
Query: 119 PARRVAGQFRLAFGDARLHPWRGAADRPRPTALSSRPGRERGGRSAGKRLAAAGAVRRVR 178
A +AG + A L + P AG R A A+
Sbjct: 181 AA--LAGVLDRCGAEVAAVAHATAVLTGPAVGLLTAPA---AALPAGLRAAPTAALLTAP 235
Query: 179 WPIAAGGRLQLRAQPAGQAPPTALAGPAAWLAGRCHAGLGATRDLRLGSPCAGLI---EC 235
+ GG L A P G P AGP G AG + +R G C G
Sbjct: 236 AAVLPGGVLPGAALPDGAHPA---AGPGEACEGTAPAGEALSAAVRPGEACPGTALPDGV 292
Query: 236 TAGLESAGLRFPI-----DPRPATCGGGLR--------HARAGHQ------PVDRPRPGR 276
G+ S G FP P PA R G P D P PG
Sbjct: 293 LPGVASPGGAFPAADVLGGPFPAAVRSAAALPDWALPAAVRPGEACPGTALPTDAP-PGA 351
Query: 277 APGRRVRCQPGGPRP-GSVEPARALAVGEPVGGF--LHPLRAQSGSRCALP-AGGCVFGA 332
AP PGG P G P + VG GG + P RA + A P G V G
Sbjct: 352 AP-------PGGALPDGGARPLTSGEVGVRQGGVGPVAPGRAGASPGGAEPLVPGPVSGV 404
Query: 333 LGGPAGR------ARCAPDRACTVAGDGRRHPADRLGP-----DRPPGAPRALPQRPRRM 381
PAG R A D AG R +D P D AP ++ R+
Sbjct: 405 RADPAGGDGASAFGRVAADHVVP-AGVRPRASSDPAAPVDLVADLLGRAPASVVDARARL 463
Query: 382 PGGRPNRPGHAAVA-------AAERHLRGSA-----GVAVLLPAAHLDTTRTAPAQRRGR 429
G +R AAV AE HLR + G + + A HL T G
Sbjct: 464 AGAGLDRADPAAVLDVLPAARRAELHLRAARTLHERGESPAVVADHLVTA--------GL 515
Query: 430 GAAHRRLDLLRRLRLPATPHAPMRQATAGAGRPPGELHRLRRRSAVAAGSPPPARRGTPP 489
A +D+L + A HA A HR R A + PP PP
Sbjct: 516 PAPAWAVDVL----VAAADHALAADDVPTAVARLAAAHR--RDDADQPRAVPPRAVPDPP 569
Query: 490 GIAPRSPAGPRSAGPAGRRRLPPALRRLTLRAPPAMSVRCRRAAVAAIPAAA 541
A R R+A PA RR P A A PA++ R RA PAAA
Sbjct: 570 VAAHRCGCADRTAAPAERRTSPEA----AAVAGPALTARLARARWQLNPAAA 617
>gb|AAG20155.1| (AE005093) Vng1983h [Halobacterium sp. NRC-1]
Length = 494
Score = 59.7 bits (143), Expect = 5e-08
Identities = 126/418 (30%), Positives = 145/418 (34%), Gaps = 73/418 (17%)
Query: 262 ARAGHQPVDRPRPGRAPGRRVRCQPGGPRPGSVEPARALAVGEPVGGFLHPLRAQSGSRC 321
AR PV R G+ C GP V A PVG L R R
Sbjct: 75 ARDDAAPVPRTAVRDGGGQTRECPSRGPVSVGVT-AEPPVRRRPVGRLL---RRVLRGRA 130
Query: 322 ALPAGGCVFG------ALGGPAGRARCAPDRACTVAGDGRRHPADRLGPDRPPGAPRALP 375
+ G V G A G P R P RA G R DR+G +RP PR
Sbjct: 131 RVDRAGAVRGRARADTASGRPPRRGETRPHRADVGCG---RPVCDRVGANRP-AEPRHRL 186
Query: 376 QRPRRMP----------GGRPNRPGHAAVAAAERHLR-----GSAGVAVLLPAAHLDTTR 420
Q RR+ G R GH AV E LR G L P DT
Sbjct: 187 QHCRRLRRRLVALQDALGPRAGDRGHGAVLPPEVRLRVPRVRGRPVAVDLRPRGRRDTR- 245
Query: 421 TAPAQRRGRGAAHRRLDLLRRLRLPATPHAPM--RQATAGAGRPPGELHRLRRRSAVAAG 478
PA GR AA R + RR P P+ R R P + R R VAA
Sbjct: 246 --PALDPGRTAARDRPERPRRRPRVGGPRRPLVRRPLRHLVDRIPRDCRGSRLR--VAAR 301
Query: 479 SPPPARRGTPPGIAPRSPAGPRSAGPAGRRRLPPALRRLTLRAPPAMSVRCRRAAVAAIP 538
R P G A R P R R+R P LRR R + + RRAA+ P
Sbjct: 302 HAVGGRDSAPRGAAGRRPHRGRRGLAGARQRGVPGLRRRAGR----LRLAARRAAMGR-P 356
Query: 539 AAACRASSPTVQGRREPRRF--PRRCARHPV--------------RPPRSARGFPVSAVR 582
+ GRR P R P R PV RPP+ AR P A
Sbjct: 357 GRGHQFG----LGRRRPARLDDPGPRPRAPVRDVSRRRRTRGRRRRPPQRARR-PGGA-- 409
Query: 583 RWCRP----VPVRGSVVPRRPGTASDRP----APEPSRPGVVAGR-RAAGCAGRPRRA 631
R CRP +P+ + PR A R A +RP R R A +G PR A
Sbjct: 410 RQCRPSKSALPLAVTGRPRGRSLAGTRARTTGASRAARPASSRRRSRPADTSGSPRTA 467
>dbj|BAC50127.1| (AP005952) bll4862 [Bradyrhizobium japonicum USDA 110]
Length = 887
Score = 58.5 bits (140), Expect = 1e-07
Identities = 85/296 (28%), Positives = 101/296 (34%), Gaps = 55/296 (18%)
Query: 364 PDRPPGAPR--ALPQRPRRMPGGRPNRPGHAAV-----AAAERHLRGS--------AGVA 408
P PPG P A RP +PGG P + A AA + GS AG A
Sbjct: 598 PGIPPGTPANVAPNARPSALPGGLPGTAPNVAPQTRLPAANTLPVPGSHGGPPAPPAGAA 657
Query: 409 VLLPAAH-LDTTRTAPAQRRGRGAAHRRLDLLRRLRLPATPHAPMRQATAGAGRPPGELH 467
LP L +T TAP LP P AP TA G P
Sbjct: 658 GTLPGGKPLPSTATAPGTT-----------------LPTHPGAP---TTAAPGTTPPPHL 697
Query: 468 RLRRRSAVAAGSPPPARRGTPPGIAPRSPAG--PRSAGPAGRRRL--------PPALRRL 517
+A G+P PG P+ P P AGPA R + PPA
Sbjct: 698 GAPTAAAPTTGAPTTTNPAVVPGQPPKPPVAQTPPGAGPADRAKSATREPAGPPPAAAGK 757
Query: 518 TLRAPP-AMSVRCRRAAVAAIPAAACRASSPTVQGRREPRRFPRRCARHPVRPPRSARGF 576
+ PP A+ R A P A + ++P + + R P R PPR A
Sbjct: 758 PVVPPPSAVHEPIRPQAHPPAPPQAAKPAAPPPRPQAVARPTPPPPPRVSAPPPRMAAPP 817
Query: 577 PVSAVRRWCRPVPVRGSVVPRRPGTASDRPAPEPSRPGVVAGRRAAGCAGRPRRAA 632
P RP P P P A P P +RP R A A PR AA
Sbjct: 818 PP-------RPAPPVAVARPAPPPMARPAPPPPVARPAPPPPPRVA-VAPPPRPAA 865
Score = 55.5 bits (132), Expect = 1e-06
Identities = 105/385 (27%), Positives = 121/385 (31%), Gaps = 66/385 (17%)
Query: 247 PIDPRPATCGGG------LRHARAGH-QPVDRPRPGRAPGRRVRCQPG-GPRPGSVEPAR 298
P P PA GGG L A AG PV P A R Q G P P S
Sbjct: 535 PPAPPPAGGGGGGTGPGNLTPAIAGRANPVAPMLPQAATQRAALIQQGKAPMPLSATVQP 594
Query: 299 ALAVGEPVGGFLHPLRAQSGSR-CALPAGGCVFGALGGPAGRARCAPDRACTVAGDGRRH 357
G P G P +R ALP G + G A + R V G
Sbjct: 595 TARPGIPPGT---PANVAPNARPSALPGG--LPGTAPNVAPQTRLPAANTLPVPGSHGGP 649
Query: 358 PADRLGPDRPPGAPRALPQRPRRMPGGRPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLD 417
PA G + LP P PG AA G
Sbjct: 650 PAPPAGAAGTLPGGKPLPSTATAPGTTLPTHPGAPTTAAPGTTPPPHLGAPTAAAPTTGA 709
Query: 418 TTRTAPAQRRGRGAAHRRLDLLRRLRLPATPHAPMRQATAGAGRPPGELHRLRRRSAVAA 477
T T PA G+ P P+ Q GAG P + R + + A
Sbjct: 710 PTTTNPAVVPGQ-----------------PPKPPVAQTPPGAG--PAD--RAKSATREPA 748
Query: 478 GSPPPARRGTPPGIAPRS-----------PAGPRSAGPAGRRRLPPALRRLTLRAPPAMS 526
G PPPA G P P + PA P++A PA P A+ R T PP +S
Sbjct: 749 G-PPPAAAGKPVVPPPSAVHEPIRPQAHPPAPPQAAKPAAPPPRPQAVARPTPPPPPRVS 807
Query: 527 VRCRRAAVAAIPAAACRASSPTVQGRREPRRFPRRCARHPVRPPRSARGFPVSAVRRWCR 586
A P + PR P P PP AR P V R
Sbjct: 808 -----------------APPPRMAAPPPPRPAPPVAVARPA-PPPMARPAPPPPVARPAP 849
Query: 587 PVPVRGSVV-PRRPGTASDRPAPEP 610
P P R +V P RP RPA P
Sbjct: 850 PPPPRVAVAPPPRPAAPPPRPAAPP 874
Score = 42.7 bits (99), Expect = 0.007
Identities = 83/347 (23%), Positives = 105/347 (30%), Gaps = 29/347 (8%)
Query: 89 PPGAAGQPAIRPGRAAADLSRRRLPVAARRPARRVAGQFRLAFGDARLHPWRGAADRPRP 148
PP G PG ++ R PVA P + G A + RP
Sbjct: 539 PPAGGGGGGTGPGNLTPAIAGRANPVAPMLPQAATQRAALIQQGKAPMPLSATVQPTARP 598
Query: 149 -----TALSSRPGRERGGRSAGKRLAAAGAVRRVRWPIAAGGRLQLRAQPAGQAPPTALA 203
T + P G A + R P A L + G PP A
Sbjct: 599 GIPPGTPANVAPNARPSALPGGLPGTAPNVAPQTRLP--AANTLPVPGSHGG--PPAPPA 654
Query: 204 GPAAWLAG-----RCHAGLGATRDLRLGSPCAGLIECT--AGLESAGLRFPIDPRPATCG 256
G A L G G T G+P T L + P P T
Sbjct: 655 GAAGTLPGGKPLPSTATAPGTTLPTHPGAPTTAAPGTTPPPHLGAPTAAAPTTGAPTTTN 714
Query: 257 GGLRHARAGHQPVDRPRPGRAPGRRVRC---QPGGPRPGS----VEPARALAVGEPVGGF 309
+ + PV + PG P R + +P GP P + V P + AV EP+
Sbjct: 715 PAVVPGQPPKPPVAQTPPGAGPADRAKSATREPAGPPPAAAGKPVVPPPS-AVHEPIRPQ 773
Query: 310 LHPLRAQSGSRCAL--PAGGCVFGALGGPAGRARCAPDRACTVAGDGRRHPADRLGPDRP 367
HP ++ A P V P R P R +A PA + RP
Sbjct: 774 AHPPAPPQAAKPAAPPPRPQAVARPTPPPPPRVSAPPPR---MAAPPPPRPAPPVAVARP 830
Query: 368 PGAPRALPQRPRRMPGGRPNRPGHAAVAAAERHLRGSAGVAVLLPAA 414
P A P P + P P AVA R A PAA
Sbjct: 831 APPPMARPAPPPPVARPAPPPPPRVAVAPPPRPAAPPPRPAAPPPAA 877
>dbj|BAB99378.1| (AP005280) Translation initiation factor 2 (GTPase)
[Corynebacterium glutamicum ATCC 13032]
Length = 1004
Score = 58.2 bits (139), Expect = 2e-07
Identities = 105/392 (26%), Positives = 139/392 (35%), Gaps = 84/392 (21%)
Query: 88 GPPGAAGQPAIRPGRAAADLSRRRLPVAARRPARRVAGQFRLAFGDARLHPWRGAADRPR 147
G P PA +P AA + P AA +P + A A P GA +P
Sbjct: 84 GAPAKPAAPAAKPAPAAPSAASAAKPGAAPKPGVQ-------AKPAAAAKP--GAPAKP- 133
Query: 148 PTALSSRPGRERGGRSAGKRLAAAGAVRRVRWPIAAGGRLQLRAQPAGQAP-PTALAGPA 206
A + P + G SA K AAA P A + + A+P +AP P + P
Sbjct: 134 --AAPAAPSAAKSG-SAPKPAAAAKPAFSGPTPGDAAKKAEPAAKPGAEAPRPGGMPRP- 189
Query: 207 AWLAGRCHAGLGATRDLRLGSPCAGLIECTAGLESAGLRFP-IDPRPATCGGGLRHAR-- 263
+G P G R P + P + GGG R A
Sbjct: 190 ------------------MGKPAP----------KPGARAPRVANNPFSTGGGERPAPRP 221
Query: 264 -AGHQPVDRPRPGRAPGRRVRCQPGGPRPGSVEPAR------------ALAVG-EPVGGF 309
G +P PRPG P + + +PGG R G + R A A G P GG
Sbjct: 222 GGGPRPGGGPRPGGGPRPQGQGRPGGQRDGQRDGQRDGQGNRGGQRQGAGAGGPRPQGG- 280
Query: 310 LHPLRAQSGSRCALPAGGCVFGALGGPAGRARCAPDRACTVAGDGRRHPADRLGPDRPPG 369
R Q GSR P GG GA G P+ + G GRR P+ + P P
Sbjct: 281 ---PRPQGGSR---PQGGSAQGAQGAPSQERQ----------GGGRR-PSPAMMPPTPGQ 323
Query: 370 APRALPQRPRR------MPGGRPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTRTAP 423
P P + R GG NR G A RG A P R +
Sbjct: 324 MPAKAPGKGGRGGQAGGGAGGGFNRGGGTGGGAGRGGRRGGTAGAFGRPGGAPRRGRKSK 383
Query: 424 AQRRGRGAAHRRLDLLRRLRLPATPHAPMRQA 455
Q+R + + +++ +RLP A +R A
Sbjct: 384 RQKRNEYESMQAPNVIGGVRLPDGKGATIRLA 415
>gb|AAG29834.1|AF308446_1 (AF308446) unknown [Paracoccus pantotrophus]
Length = 251
Score = 57.8 bits (138), Expect = 2e-07
Identities = 75/282 (26%), Positives = 94/282 (33%), Gaps = 63/282 (22%)
Query: 276 RAPGRRVRCQPGGPRPGSVEPARALAVGEPVGGFLHPLRAQSGSRCALPA-GGCVFGALG 334
R+PGR+ + PRP A A V P R Q R +P GG G
Sbjct: 2 RSPGRKTAPRTAMPRPARAAKAPRTAASAVVAAA--PSRRQERRRRGVPCRGGSDHAEDG 59
Query: 335 GPAGRARCAPDRACTVAGDGRRH-----PADRLGPDRPPGAPRALPQRPRRMPGGRPNRP 389
+ P GD R P R+ P+R P PR+ P R R NRP
Sbjct: 60 AEDAVSEAEPPSGLPKRGDAARSCPRSWPGPRMRPNRMPNRPRSRAAAPGRAAASRKNRP 119
Query: 390 GHAAVAAAERHLRGSAGVAVLLPAAHLDTTRTAPAQRRGRGAAHRRLDLLRRLRLPATPH 449
R + RR R ++ LP PH
Sbjct: 120 ----------------------KPPWRSRRRVSKPSRRSRPSS-----------LPRRPH 146
Query: 450 APMRQATAGAGRPPGELHRLRRRSAVAAGSPPPARRGT-----PPGIAPRSPAGPRSAGP 504
R HR RR S P ARR T PP PR P PR+ P
Sbjct: 147 -----------RRTPRRHRRMRRPGSRLPSLPSARRPTPRLLNPPRPTPRKPR-PRNPKP 194
Query: 505 AGRRRL----PPALRRLTLRAPPA-MSVRCRRAAVAAIPAAA 541
+G+R P RR + PP+ + R RR +P+AA
Sbjct: 195 SGQRPKRPLHPKPCRRPSPSPPPSPLPPRPRRTRSRRVPSAA 236
>gb|AAD42858.1|AF159693_1 (AF159693) serine/threonine kinase PKN13 [Myxococcus xanthus]
Length = 935
Score = 57.4 bits (137), Expect = 3e-07
Identities = 96/351 (27%), Positives = 123/351 (35%), Gaps = 44/351 (12%)
Query: 288 GPRPGSVEPARALAVGE-----PVGGFLHPL--RAQSGSRCALPAGGCVFGALGGPAGRA 340
G G V A+ +A+G P GG P RA R A P+ G PA
Sbjct: 330 GDTTGVVNLAKVMAMGVEPSELPTGGVTLPPAPRASGTPRNAAPSPAPRRPTTGAPAASP 389
Query: 341 RCAPDRACTV-AGDGRR-----HPADRLGPDRPPGAPRALPQRPRRMPGGRPNRPGHAAV 394
R + A G+R PAD P PP LP + +P P H+
Sbjct: 390 EAGTVRKAVLQAPPGKRLASRASPADAHAPPPPPAEATTLPPSGGQHVRTQPGMPAHSPE 449
Query: 395 AAAERHLRGS---AGVAVLLPAAHLDTTRTAPAQRRGRGAAHRRLDLLRRLRLPATPHAP 451
L G+ AG + P + + + A AA R +R +R P +P P
Sbjct: 450 HTVRTQLPGTGRDAGASASTP-GEASSRQGSRASAADAQAADREQTQVRGVRSPESPAPP 508
Query: 452 M-RQATAGAGRPPGEL------HRLRRRSAVAAGSPPPARRGTPPGIAPRS--PAGPRSA 502
+ A R P L HR R A P PA P + R+ PA
Sbjct: 509 APGDSRARPIRTPDTLPAADDAHRARSSRAT---EPTPAGDDAPRTRSSRAHEPAPTSDD 565
Query: 503 GPAGRRRLPPALRRLTLRAPPAMSVRCRRAAVAAIPAAACRASSPTVQGRREPRRFPRRC 562
P R P ++ PP R R A+ RAS PT R
Sbjct: 566 APRARSSRTPE-PSPSVNEPPRAEARSR----ASRTQDGLRASVPTPPPAE--RDLQTAM 618
Query: 563 ARHPVRPP-RSARGFPVSAVRRWCRPVPVRGSVVPRRPGTASDRPAPEPSR 612
R PV PP R PV+ R RP+P R RR G +S P +P R
Sbjct: 619 IRMPVLPPERGGDTAPVTPSPR--RPIPPR-----RRQGGSSTEPTTQPVR 662
>emb|CAA39559.1| (X56082) endo-glucanase [Ruminococcus flavefaciens]
Length = 680
Score = 55.5 bits (132), Expect = 1e-06
Identities = 103/353 (29%), Positives = 132/353 (37%), Gaps = 75/353 (21%)
Query: 257 GGLRHARAGHQPV--------------DRPRPGRA----PGRRVRCQPGGPRPGSVEPAR 298
G L H ++G PV D+ RP RA P R R QPGG +P +
Sbjct: 134 GQLVHPQSGLVPVVRGVPAPPPRDRRRDQSRPRRALVQLPLPRDREQPGGHQPHDADAVH 193
Query: 299 ALAVGEPVGGFLHPLRAQSGSRCALPAGGCVFGALGGPA-GRARCAPDRACTVAGD-GRR 356
G +R Q SR P V GP+ GR+ PDR V GRR
Sbjct: 194 GGGRG---------VRGQLQSR--RPRDRRVRDHRDGPSDGRSFDPPDRQRAVRRQRGRR 242
Query: 357 HPADRLGPDRPPGAPRALPQRPRRMPGGRPNRPGHAAVAAAERHLRG--SAGVAVLLPAA 414
H RL R RPR P R + G A R RG + + AA
Sbjct: 243 H---RLVDRRV---------RPREQPVPRVRQRGPGVRAHEHRRRRGPLAGDLVERAQAA 290
Query: 415 HLDTTRTAPAQR----------RGRGAAHRRLD-------LLRRLRLPATPHAPMRQATA 457
H + + P +GRGA R D +R+R H + A
Sbjct: 291 HPRSVQREPIDHGGRELHRVGAQGRGAREDRGDGAGRERGRAQRIRRGGRLHRAEGRREA 350
Query: 458 GAG-RPPGELHRLRRRSAVAAGSPPPARRGTPPG--IAPRSPAGPRS--AGPAGRRRLPP 512
G R G L+RR A A P RR P G + R+ G R+ AG +G+RR+ P
Sbjct: 351 SLGLRARGVPSGLQRRQASAVEQRHPGRRRPPEGRDLQRRAVPGSRAPQAGASGQRRVGP 410
Query: 513 ---ALRRLTLRAPPAMSVRCRRAAVAAIPAAACRASSPTVQGRREPRRFPRRC 562
+ RL + A + +R R + A C A P V R PR P RC
Sbjct: 411 RGGGVGRLRVSALRVVPLRRR----SGRDRADCHA-RPGVSHRATPRGHPHRC 458
>dbj|BAC71268.1| (AP005035) hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 903
Score = 55.5 bits (132), Expect = 1e-06
Identities = 117/430 (27%), Positives = 136/430 (31%), Gaps = 75/430 (17%)
Query: 4 PAAVPRLATGATPGHAQARGLGRPEWRDPGTAAIDGLCADRRPASGVRPVRGDAASG-DR 62
PAA P T G G G P R A+D D PA+ PV G R
Sbjct: 154 PAATPDAKTALMSG-----GSGLP--RTTVAPALD----DAVPAAPQGPVTPPPGPGAPR 202
Query: 63 LPVGLVALPGERSHRGDLGAAVQFGGPPGAAGQPAI------------------------ 98
+P G A G + G +A +G P G P+
Sbjct: 203 VPSGPSAAQGPGAPEGAAPSAPSYGYPQGPGAAPSAPSYGYPQGPGAVPGTPPPGAPQAP 262
Query: 99 -RPGRAAADLSRRRLPVAARRPARRVAGQFRLAFGDARLHPWRGA-ADRPRPTALSSRPG 156
P A + PV RP AG A ++ P RGA A PRP PG
Sbjct: 263 GAPHAPGAPQAPTGSPVPG-RPLAPNAGDIADA-ATSKAAPPRGARAGAPRPPGAPGVPG 320
Query: 157 RERGGRSAGKRLAAAGAVRRVRWPIAAGGRLQLRAQPAGQAPPTALA------GPAAWLA 210
A A GA+ P A G PAG PT L GP LA
Sbjct: 321 -------APGTPGAPGAMPPASGPGAPG-------TPAGGYVPTQLVSQLGPDGPEG-LA 365
Query: 211 GRCHAGLGATRDLRLGSPCAGLIECTA-----GLESAGLRFPIDPRPATCGGGLRHARAG 265
G T + G+P G+ G AG P P P G
Sbjct: 366 GPNPPSAPGTPNPPGGTPPGGVHHAATMFADPGRPGAGPGAPQPPGPPGAPGRPGVPNPP 425
Query: 266 HQPVDRPRPGRAPGRRVRCQPGGPRPGSVEPARALAVGEPVGGFLHPL--RAQSGSRCAL 323
P +PG PGG PG V A + G VGG PL G+
Sbjct: 426 GPPGAPGQPGAPGAPGAPNTPGGTPPGGVHHAATMLAGPSVGGPGAPLPPPGAPGAPGMP 485
Query: 324 PAGGCVFGALGGPAGRARCAPDRA-CTVAGDGRRHPADRLGPDRPPGAPRALPQRPRRMP 382
P GA GGP G A V G G P P P G P +PQ
Sbjct: 486 PGAPGAPGAPGGPGGVHHAETMLAGPPVGGPGLPPPGAPGAPGMPAGTPPGVPQ------ 539
Query: 383 GGRPNRPGHA 392
G P +PG A
Sbjct: 540 GWPPPQPGQA 549
Score = 53.1 bits (126), Expect = 5e-06
Identities = 107/407 (26%), Positives = 126/407 (30%), Gaps = 49/407 (12%)
Query: 245 RFPIDPRPATCGGGLRHARAGHQPVDRPR-PGRAPGRRVRCQPGGPR--PGSVEPARALA 301
R P P A G A P+ PG AP P GP PG+ P A
Sbjct: 202 RVPSGPSAAQGPGAPEGAAPSAPSYGYPQGPGAAPSAPSYGYPQGPGAVPGTPPPGAPQA 261
Query: 302 VGEP--VGGFLHPLRAQSGSRCALPAGGCVFGALGGPAGRARCAPDRACTVAGDGRRHPA 359
G P G P + R P G + A ++ AP R
Sbjct: 262 PGAPHAPGAPQAPTGSPVPGRPLAPNAGDI-----ADAATSKAAPPRGA----------- 305
Query: 360 DRLGPDRPPGAPRA-----LPQRPRRMP-GGRPNRPGHAAVAAAERHL------RGSAGV 407
R G RPPGAP P P MP P PG A L G G+
Sbjct: 306 -RAGAPRPPGAPGVPGAPGTPGAPGAMPPASGPGAPGTPAGGYVPTQLVSQLGPDGPEGL 364
Query: 408 AVLLPAAHLDTTRTAPAQRRGRGAAHRRLDLLRRLRLPATPHAPMRQATAGA-GRP---- 462
A P + T P G H R A P AP GA GRP
Sbjct: 365 AGPNPPS-APGTPNPPGGTPPGGVHHAATMFADPGRPGAGPGAPQPPGPPGAPGRPGVPN 423
Query: 463 -PGELHRLRRRSAVAAGSPPPARRGTPPG---IAPRSPAGPRSAGPAGRRRLPPALRRLT 518
PG + A A P GTPPG A AGP GP G PP
Sbjct: 424 PPGPPGAPGQPGAPGAPGAPNTPGGTPPGGVHHAATMLAGPSVGGP-GAPLPPPGAPGAP 482
Query: 519 LRAPPAMSVRCRRAAVAAIPAAACRASSPTVQG-RREPRRFPRRCARHPVRPPRSARGFP 577
P A + A + P V G P P PP +G+P
Sbjct: 483 GMPPGAPGAPGAPGGPGGVHHAETMLAGPPVGGPGLPPPGAPGAPGMPAGTPPGVPQGWP 542
Query: 578 VSAVRRWCRPVPVRGSVVPRRPGTASDRPA---PEPSRPGVVAGRRA 621
+ P P+ G +P +P PA P +P V G +A
Sbjct: 543 PPQPGQAMAPQPMPGQPMPPQPMPGQQPPAYGYPPTGQPTVGPGYQA 589
Score = 42.7 bits (99), Expect = 0.007
Identities = 75/298 (25%), Positives = 95/298 (31%), Gaps = 36/298 (12%)
Query: 335 GPAGRARCAPDRACTVAGDGRRHPADRLGP----DRPPGAPRALPQRPRRMPGGRPNRPG 390
G A DR+ + P LG D PP P A P + G P
Sbjct: 116 GTDTNAEAGEDRSVPLPATVFAPPLSGLGDLRDEDTPP--PAATPDAKTALMSGGSGLPR 173
Query: 391 HAAVAAAERHLRGSA-GVAVLLPAAHLDTTRTAPAQRRGRGAAHRRLDLLRRLRLPATPH 449
A + + + G P + P+ +G GA A P
Sbjct: 174 TTVAPALDDAVPAAPQGPVTPPPGPGAPRVPSGPSAAQGPGAPEG-----------AAPS 222
Query: 450 APMRQATAGAGRPPGELHRLRRRSAVAAGSP--PPARRGTPPGIAPRSPAGPRSAG-PAG 506
AP G G P SA + G P P A GTPP AP++P P + G P
Sbjct: 223 APSYGYPQGPGAAP---------SAPSYGYPQGPGAVPGTPPPGAPQAPGAPHAPGAPQA 273
Query: 507 RRRLPPALRRLTLRAPPAMSVRCRRAAVAAIPAAACRASSPTVQGRREPRRFPRRCARHP 566
P R L AP A + + AA P A RA +P G P
Sbjct: 274 PTGSPVPGRPL---APNAGDIADAATSKAAPPRGA-RAGAPRPPGAPGVPGAPGTPGAPG 329
Query: 567 VRPPRSARGFPVSAVRRWCRPVPVRGSVVPRRP-GTASDRPAPEPSRPGVVAGRRAAG 623
PP S G P + + P + + P P G A P P P G G
Sbjct: 330 AMPPASGPGAPGTPAGGYV-PTQLVSQLGPDGPEGLAGPNPPSAPGTPNPPGGTPPGG 386
>gb|AAM09086.1| (AY008259) Tpase2 [Frankia sp. Ar15]
Length = 435
Score = 54.7 bits (130), Expect = 2e-06
Identities = 74/229 (32%), Positives = 85/229 (37%), Gaps = 59/229 (25%)
Query: 325 AGGCVFGALG-GPAGRARCAPDRACTVAGDGRRHPADRLGPDRPPGAPRALPQRPRRMPG 383
AG C A+G GP+GR+ A DR+ AG PADR P RP
Sbjct: 4 AGECPHRAVGRGPSGRS--AGDRSAVDAGTATGRPADR-------------PFRPG---- 44
Query: 384 GRPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTRTAPAQRRGRGAAHRRLDLLRRLR 443
P RPG R LR AG P +RR R A H DL R R
Sbjct: 45 --PARPGLLRAGRHRRLLRRPAG--------------DRPVRRRDRLAGHGGGDLRRPAR 88
Query: 444 LPATPHAPMRQATAGAGRPPGELHRLRRRSAVAAGSPPPARRGTPPG---IAPRSPAGPR 500
P+ P PP HR R A +P P R PG PR +
Sbjct: 89 GPSCPLV----------GPPRCHHRSRACRGRRADAPGPGRGPPAPGRGNTPPRRRPPGQ 138
Query: 501 SAGPAGRRRLPPALRRL---TLRAPPAMSVRCRRAAVAAIPAAACRASS 546
AG AG RR P RRL T+R +R A IPAA +S
Sbjct: 139 HAGAAGLRR--PVRRRLHPHTVREESE-----QRMTTATIPAAPAGKTS 180
>emb|CAB75380.1| (AL939113) conserved hypothetical protein SCC88.10c [Streptomyces
coelicolor A3(2)]
Length = 1340
Score = 54.7 bits (130), Expect = 2e-06
Identities = 82/312 (26%), Positives = 99/312 (31%), Gaps = 41/312 (13%)
Query: 336 PAGRARCAPDRACTVAGDGRRHPADRLGP---------DRPPGAPR-ALPQRPRRMPGGR 385
P R R A R G PA+ + P + P AP A P RPRR R
Sbjct: 26 PPRRRRRAASRPAGPPSGGSEAPAETVAPAGTAPAEAAEAPEPAPEPAAPARPRRRAVRR 85
Query: 386 PNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTRTAPAQRRGRGAAHRRLDLLRRLRLP 445
+ P A AA SA A P +TT + A R R +
Sbjct: 86 ASAPAGAPEAAEAAETVVSAAPAAETPVPAEETTESVAATESAAPKGRTRRRATRSVTSA 145
Query: 446 ATPHAPMRQATAGAGRPPGELHRLRRRSAVAAGSPPPARRGTPPGIA----PRSPAGPRS 501
A P A A A P + A +P PA P +A S A S
Sbjct: 146 AEP-TVSEPAAAAAPEPAA--------APEPAAAPEPA-AAPEPAVAETQEAESEAEAES 195
Query: 502 AGPAGRRRLPPALRRLTLRAPPAMSVRCRRAAVAAIPAAACRASSPTVQGRREPR---RF 558
A P GR R RR T R AA A PA A +++P
Sbjct: 196 AAPKGRTR-----RRATRRVSAPAEAGDSEAAAAPEPARAAESAAPAKAAEAAESGEDAA 250
Query: 559 PRRCARHPVRPPRSARGFPVSAVRRWCRPVPVRGSVVPRRPGTA-------SDRPAPEPS 611
PRR R R ++A GF A P RP A ++ P
Sbjct: 251 PRRARRRSTR--KAATGFAAPAQTAAAAADEAEAPKRPSRPAVAVFQAPVFAEPQFQTPE 308
Query: 612 RPGVVAGRRAAG 623
R A AAG
Sbjct: 309 RAAAEAAAEAAG 320
Score = 45.8 bits (107), Expect = 8e-04
Identities = 70/271 (25%), Positives = 93/271 (34%), Gaps = 34/271 (12%)
Query: 377 RPRRMPGGRPNRPGHAAVAAAERHLRGSAGVAVL----LPAAHLDT-TRTAPAQRRGRGA 431
+P GG R A A + H VA + P DT + T A
Sbjct: 978 QPSSAGGGGGKRRKRARAGAEQPHEHEHEAVAGIETGPTPEQEADTESETEVAAEVAEPV 1037
Query: 432 AHRRLDLLRRLRLPATPHAPMRQATAGAGRPPGELHRLRRRSAVAAGSPPPARRGTPPGI 491
A D L ++ AT G GR R RR++ AG+P A +G
Sbjct: 1038 ALPAPDFSADEELYSSAAEAEAAATRGRGR-----RRASRRASAPAGAP-RAAKGEAKAE 1091
Query: 492 APRSPAGPRSAGPAGRRRLPPALRRLTLRAPPAMSVRCRRAAV------AAIPAAACRAS 545
+ ++ A P A A + + R +R PA V AAV A PAAA +
Sbjct: 1092 SVKAEAAPAGAPTAQDVTVREEVER-PVRREPAAEVLAEPAAVEDAVSGAPAPAAAAETA 1150
Query: 546 SPTVQGRREPRRFPRRCARHPVRPPRSARGFPVSAVRRWCRPVPVRGSVVPRRPGTASDR 605
+P + R RR R P S G + + VP T S+
Sbjct: 1151 APAPEEAAPKGRTRRRATRKVSAPAGSPEGAEAAVL------------TVPETSTTVSEP 1198
Query: 606 PAPEPSRPGVVAGRRA----AGCAGRPRRAA 632
APEP + A A RPRR A
Sbjct: 1199 SAPEPEQAPEAAPAAAEPAETAAPARPRRRA 1229
>gb|AAK24155.1| (AE005890) hypothetical protein [Caulobacter crescentus CB15]
Length = 385
Score = 54.3 bits (129), Expect = 2e-06
Identities = 109/340 (32%), Positives = 131/340 (38%), Gaps = 83/340 (24%)
Query: 87 GGPPGAAGQPAIRPGRAAADLSRRRLPVAARRPARRVAGQFRLAFGDARLHPWRGAADRP 146
G PP A PA G+AAAD RL P RR RL GD RLH AD P
Sbjct: 61 GQPPQPAAGPARAEGQAAAD----RL-----FPDRR-----RLRGGD-RLH-----ADHP 100
Query: 147 RPTALSSR----PGR------ERGGRSAGKRLAAAGAVRRVRWPIAAGGRLQLRAQPAGQ 196
P A + R PGR +R R +R+A G V +P+ A GR + R +
Sbjct: 101 PPRARARRPLGDPGRSGRGLPQRPDRGLCRRVADQG---HVPFPLGARGRYRER-----R 152
Query: 197 APPTALAGPAAWLAGRCHAGLGATRDLRLGS--PCAGLIECTAGLESAGLRFPI---DPR 251
A LA P L H G RDL+ P ++ + G P+ R
Sbjct: 153 ADADLLARPHPALR---HGRSGGARDLQAPDRPPLCRRLQPDHRRDDRGQLRPLRRGAGR 209
Query: 252 P----------ATCGGGLRH----ARAGHQPVD---RPRPGRAPGRRVRCQPGGPRPGSV 294
P A GGGLRH G D RP APG R+ G R G V
Sbjct: 210 PDRAARLCAGRAPLGGGLRHPGPAVATGDHRADLGGHHRPALAPGARL----AGSRRGPV 265
Query: 295 EP-ARALAVGEPVGGFLHPLRAQSGSRCALPAGGCVFGALGGPAGRARCAPDRACTVAGD 353
P AR A+G +S S A +G G PAG+ + +R G
Sbjct: 266 RPGARRDALG---------FAGRSHSHSAAASGRDRPGLCAVPAGQRQGRDERGRGGRGG 316
Query: 354 GRRHPADRLGP-DRP-PGAPRALPQRP-RRMPGGRPNRPG 390
RR P LGP D P PG P+ R GGRP G
Sbjct: 317 NRRPP---LGPADLPLPGQVSDGPEAGLRGAVGGRPRGGG 353
Score = 42.4 bits (98), Expect = 0.009
Identities = 68/213 (31%), Positives = 81/213 (38%), Gaps = 21/213 (9%)
Query: 423 PAQRRGRGAAHRRLDLLRRLRLPATPHAPMRQATAGAGRPPGELHRLRRRSAVAAGSPPP 482
PA+ G+ AA R RRLR HA A A RP G+ R R G P
Sbjct: 70 PARAEGQAAADRLFPDRRRLRGGDRLHADHPPPRARARRPLGDPGRSGR------GLPQR 123
Query: 483 ARRGTPPGIAPRSPAGPRSAGPAGRRRLPPALRRLTLRAPPAMSVRCRRAAVAAIPAAAC 542
RG +A + P G GR R A L R PA+ R R+ A A
Sbjct: 124 PDRGLCRRVADQGHV-PFPLGARGRYRERRADADLLARPHPAL--RHGRSGGARDLQAPD 180
Query: 543 RASSPTVQGRREPRRFPRRCARHPVRPPRSARGFPVSAVRRWCRPVPVRGSVVPRRPGTA 602
R P + R +P RR R +RP R G P A R P+ G + R PG A
Sbjct: 181 R---PPLCRRLQPDH--RRDDRGQLRPLRRGAGRPDRAARLCAGRAPLGGGL--RHPGPA 233
Query: 603 ---SDRPAP--EPSRPGVVAGRRAAGCAGRPRR 630
D A RP + G R AG P R
Sbjct: 234 VATGDHRADLGGHHRPALAPGARLAGSRRGPVR 266
>gb|AAK62519.1| (AY034092) proline-rich extensin-like protein [Micrococcus sp. 28]
Length = 406
Score = 54.3 bits (129), Expect = 2e-06
Identities = 113/409 (27%), Positives = 138/409 (33%), Gaps = 62/409 (15%)
Query: 227 SPCAGLIECTAGLESAGLRFPIDPRPATCGGGLRHARAGHQPVDRPRPGRAPGRRVRCQP 286
SP AG A +S+G+ P D PA L A D P P P
Sbjct: 18 SPAAG----AAPPDSSGVSTPPDASPAGASS-LPEVPAAPPAEDAPAPSPEPD------- 65
Query: 287 GGPRPGSVEPARALAVGEPVGGFLHPLRAQSGSRCALPAGGCVFGALGGPAGRARCAPDR 346
PRP + A A+ +G A +G A P+ A P AP
Sbjct: 66 SPPRPETAPAPEATAL---LGDAAAIAPAPAGRSAAFPSL-----AAAEPLAPPATAPPW 117
Query: 347 ACTVAGDGRRHPADRLGPD---RPPGAPRALPQRPRRMPGGRPNRPGHAAVAAAERHLRG 403
V P+ L + R PGA P G P AAV A +
Sbjct: 118 PTPVW----EAPSPDLSFEFRGRTPGAAALADWPPAA--GATPAAARPAAVPARAPLIGD 171
Query: 404 SAGVAVLLPAAHLDTTRTAPAQRRGRGAAHRRLDLLRRLRLPATPHAPMRQATAGAGRPP 463
+ A L PA + + R +P+TP AP+ A PP
Sbjct: 172 APPAAGLTPAPESSPSLAST-----------------RSTVPSTPPAPVPAAEV----PP 210
Query: 464 GELHRLRRRSAVAAGSPPPARRGTP-PGIAPRSPAGPRSAGPAGRRRLPPALRRLTLRAP 522
SA A P PA P + P +PA P SA P PPA +L AP
Sbjct: 211 AAPVPWSENSAEDA--PLPAAPAAPLSALLPAAPAAPLSAPPLAE---PPAAPG-SLPAP 264
Query: 523 --PAMSVRCRRAAVAAIPAAACRASSPTVQGRREPRRFPRRCARHPVRPPRS-ARGFPVS 579
PA+S AV P A A+ P + P P A P P AR P +
Sbjct: 265 FAPAVSPEAVAPAVPLAPPAVSAAAPPPARPPPGPAAPPPPAAALPPPPAAPPARAAPAA 324
Query: 580 AVRRWCRPVPVRGSVVPRRPGTASDRPAPE-PSRPGVVAGRRAAGCAGR 627
A PVP R + P A PAPE P RP G R GR
Sbjct: 325 APAP-APPVPARMAAPAAMPRAAPATPAPENPPRPAPTTGDRNRIRVGR 372
Score = 47.4 bits (111), Expect = 3e-04
Identities = 84/287 (29%), Positives = 105/287 (36%), Gaps = 44/287 (15%)
Query: 292 GSVEPARALAVGEPVGGFLHPLRAQSGSRCALPAGGCVFGALGGPAGRARCAPDRACTVA 351
G A ALA P G P A+ A+PA + G PA AP+ + ++A
Sbjct: 135 GRTPGAAALADWPPAAGAT-PAAARPA---AVPARAPLIGD-APPAAGLTPAPESSPSLA 189
Query: 352 GDGRRHPADRLGPDRPPGAPRALPQRPRRMPGGRPNRPGHAAVAAAERHLRGSAGVAVLL 411
P+ P P A P P +P N A + AA +A ++ LL
Sbjct: 190 STRSTVPST---PPAPVPAAEVPPAAP--VPWSE-NSAEDAPLPAAP-----AAPLSALL 238
Query: 412 PAAHLDTTRTAPAQRRGRGAAHRRLDLLRRLRLPATPHAPMRQATAGAGRPPGELHRLRR 471
PAA P LPA P AP A A P
Sbjct: 239 PAAPAAPLSAPPLAEPPAAPGS----------LPA-PFAPAVSPEAVAPAVP------LA 281
Query: 472 RSAVAAGSPPPARRGTPPG-IAPRSPAGPRSAGPAGRRRLPPALRRLTLRAPPAMSVRCR 530
AV+A +PPPAR PPG AP PA PA PPA PA V R
Sbjct: 282 PPAVSAAAPPPAR--PPPGPAAPPPPAAALPPPPAA----PPARAAPAAAPAPAPPVPAR 335
Query: 531 RAAVAAIPAAACRASSPTVQGRREPRRFPRRCARHPVRPPRSARGFP 577
AA AA+P AA +P PR P R+ +R R++ P
Sbjct: 336 MAAPAAMPRAAPATPAP----ENPPRPAPTTGDRNRIRVGRTSPAIP 378
>dbj|BAC69791.1| (AP005029) hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 674
Score = 54.3 bits (129), Expect = 2e-06
Identities = 83/311 (26%), Positives = 108/311 (34%), Gaps = 61/311 (19%)
Query: 335 GPAGRARCAPDRACTVAGD-GRRHPADRLGPDRPPGAPRALPQRPRRMPGGRPNRPGHAA 393
GPA A DR + AG G+ P D G PP AP ++P+ + GG P P +
Sbjct: 48 GPAAAADSLDDRFASAAGTVGQPAPRDTAGAPLPPTAPPSVPE---QRAGGGPAAPARGS 104
Query: 394 VAAAE---------RH----LRGSAGVAVLLPAAHLDTTRTAPAQRRGRGAAHRRLDLLR 440
+ A RH RG+ A D + A G+ R D R
Sbjct: 105 ESPAAPARGSGSPGRHAGAATRGTGAADASGGAGGADASGEAGGAGGAVGSGGRHADPPR 164
Query: 441 RLRLPATPHAPMRQATAGAGRPPGELHRLRRRSAVAAGSPPPARRGTPPGIAPRSPAGPR 500
R +PA AP +A RPPG + PP RR PPG+ P +P
Sbjct: 165 R-DVPARDPAPWEPPSA---RPPG------------PATFPPGRR--PPGLRPDAP---- 202
Query: 501 SAGPAGRRRLPPALRRLTLRAPPAMSVRCRRAAVAAIPAAACRASSPTVQGRREPRRFPR 560
PAG + P + A P V+ R +P + P P P
Sbjct: 203 PPSPAGEGGVEPVNPGRSAPARPGEPVKPR----PPVPPSPIGPPQPAPAEALSPSDAP- 257
Query: 561 RCARHPVRPPRSARGFPVSA-VRRWCRPVPVRG--SVVPRRPGTASDRPAPEPSRPGVVA 617
PP PV A + R P P G S+ P +D P P P P +
Sbjct: 258 --------PP------PVEAELGRLRPPAPPVGPPSLAPTEAPAPTDAPPPPPELPDLPP 303
Query: 618 GRRAAGCAGRP 628
A A P
Sbjct: 304 PSLARAAAPPP 314
Score = 45.4 bits (106), Expect = 0.001
Identities = 94/358 (26%), Positives = 111/358 (31%), Gaps = 63/358 (17%)
Query: 174 VRRVRWPIAAGGRLQLRAQPAGQAPP---------TALAGPAAWLAGRCHAGLGATRDLR 224
+R RW I GG Q + G TA GPAA + D R
Sbjct: 11 IRPERWTI--GGMSQQGERSTGHEDDWWGQLYDDSTADTGPAA---------AADSLDDR 59
Query: 225 LGSPCAGLIECTAGLESAGLRFPIDPRPATCGGGLRHARAGHQPVDRPRPGRAPGRRVRC 284
S AG + A ++AG P P T + RAG P AP R
Sbjct: 60 FAS-AAGTVGQPAPRDTAGA-----PLPPTAPPSVPEQRAGGGPA-------APARGSE- 105
Query: 285 QPGGPRPGSVEPARALAVGEPVGGFLHPLRAQSGSRCALPAGGCVFGALGGPAGRARCAP 344
P P GS P R G G+ + AGG G G GR P
Sbjct: 106 SPAAPARGSGSPGRHAGAATRGTGAADASGGAGGADASGEAGGA--GGAVGSGGRHADPP 163
Query: 345 DRACTVAGDGRRHPADRLGPD--------RPPGA-PRALPQRPRRMPGGRPNRPGHAAVA 395
R P P RPPG P A P P G P PG +A A
Sbjct: 164 RRDVPARDPAPWEPPSARPPGPATFPPGRRPPGLRPDAPPPSPAGEGGVEPVNPGRSAPA 223
Query: 396 AAERHLRGSAGVAVLLPAAHLDTTRTAPAQRRGRGAAHRRL--DLLRRLRLPATPHAPMR 453
++ V P + + + APA+ A L RLR PA P P
Sbjct: 224 RPGEPVKPRPPV----PPSPIGPPQPAPAEALSPSDAPPPPVEAELGRLRPPAPPVGPPS 279
Query: 454 QATAGAGRPPGELHRLRRRSAVAAGSPPPARRGTPPGIAPRSPAGPRSAGPAGRRRLP 511
A A P A PPP PP R+ A P G LP
Sbjct: 280 LAPTEAPAPTD------------APPPPPELPDLPPPSLARAAAPPPPVEAPGLPPLP 325
>dbj|BAC45786.1| (AP005936) blr0521 [Bradyrhizobium japonicum USDA 110]
Length = 745
Score = 54.3 bits (129), Expect = 2e-06
Identities = 72/249 (28%), Positives = 79/249 (31%), Gaps = 69/249 (27%)
Query: 268 PVDRPRPGRAPGRRVRCQPGGPRPGSVEPARALAVGEPVGGFLHPLRAQSGSRCALPAGG 327
P P PG PG +PG P PG V P A G P P + + PA G
Sbjct: 234 PTATPAPGSTPGAPPAGRPGAPPPG-VRPGSPPAAGSP------PAPGATPAPTTTPAPG 286
Query: 328 CVFGALGGPAGRARCAPDRACTVAGDGRRHPADRLGPDRPPGAPRALPQRPRRMPGGRPN 387
G G A A T A P L P PPG P A P PG +
Sbjct: 287 GTATPPSGRPGPASTPAPGAATPAPTATPAPGGALTP--PPGRPGAGPT-----PGPQGG 339
Query: 388 RPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTRTAPAQRRGRGAAHRRLDLLRRLRLPAT 447
P A AA T AP Q G LPA
Sbjct: 340 TPPAGAPAAG---------------------TPAAPPQAGG---------------LPAR 363
Query: 448 PHAPMRQATAGAGRP---PGELHRLRRRSAVAAGSPPPAR-RGTPPGIAPRSPAGPRSAG 503
P AP AGA P PG AA +PPP R + PP + P A P
Sbjct: 364 PAAP-----AGAAAPSTVPGS----------AAATPPPNRAQFAPPTVTPAFQAAPTVVA 408
Query: 504 PAGRRRLPP 512
P PP
Sbjct: 409 PLPPPPRPP 417
Score = 49.3 bits (116), Expect = 7e-05
Identities = 83/311 (26%), Positives = 98/311 (31%), Gaps = 52/311 (16%)
Query: 247 PIDPRPATCGGGLRHARAGHQPVD---RPRP---GRAPGRRVRCQPGGPRPGSVEPARAL 300
P P P +HA P RP P P + P P P + P
Sbjct: 118 PKQPSPPPAAAPQQHAPTPPPPAPPAARPAPTPPAPPPAAAPQHAPPPPPPPAARPTPTP 177
Query: 301 AVGEPVGGFLHPLRAQSGSRCAL-PAGGCVFGALGGPAGRARCAPDRACTVAGDGRRHPA 359
P G P A + + + P G PA A AP T A P
Sbjct: 178 PPPPPAGPAARPTPAPTATPTPVAPPPAAPTARPGSPAPAATPAPTP--TPAPTATPAPT 235
Query: 360 DRLGPDRPPGAPRA-LPQRPRRMPGGRPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDT 418
P PGAP A P P PG RP P A A G+ PA
Sbjct: 236 ATPAPGSTPGAPPAGRPGAPP--PGVRPGSPPAAGSPPAP----GATPAPTTTPAP--GG 287
Query: 419 TRTAPAQRRGRGAAHRRLDLLRRLRLPATPHAPMRQATAGAGRP-PGELHRLRRRSAVAA 477
T T P+ R G PA+ AP A P PG A
Sbjct: 288 TATPPSGRPG----------------PASTPAPGAATPAPTATPAPG-----------GA 320
Query: 478 GSPPPARRGTPPGIAPRSPAGPRSAGPAGRRRLPPALRRLTLR-APPAMSVRCRRAAVAA 536
+PPP R G P P+ P A AG PP L R A PA + AA +
Sbjct: 321 LTPPPGRPGAGPTPGPQGGTPPAGAPAAGTPAAPPQAGGLPARPAAPAGA-----AAPST 375
Query: 537 IPAAACRASSP 547
+P +A P
Sbjct: 376 VPGSAAATPPP 386
Score = 47.8 bits (112), Expect = 2e-04
Identities = 77/288 (26%), Positives = 92/288 (31%), Gaps = 46/288 (15%)
Query: 358 PADRLGPDRPPGAPRALPQRPRRMPGGRPNRPGHAAVAAAERHLRGSAGVAVLLPAA--- 414
PA R P PP P A P++P P P + A R + PAA
Sbjct: 102 PAARPAPPPPPPPPAA-PKQPSPPPAAAPQQHAPTPPPPAPPAARPAPTPPAPPPAAAPQ 160
Query: 415 HLDTTRTAPAQRRG--------RGAAHRRLDLLRRLRLPATPHAPMRQATAGAGRPPGEL 466
H PA R G A R P P P TA G P
Sbjct: 161 HAPPPPPPPAARPTPTPPPPPPAGPAARPTPAPTATPTPVAP--PPAAPTARPGSPAP-- 216
Query: 467 HRLRRRSAVAAGSPPPARRGTPPGIAPRSPAGPRSAGPAGRRRLPPALRRLTLRAPPAMS 526
+A A +P PA TP A +P A PAGR PP + +PPA
Sbjct: 217 ------AATPAPTPTPAPTATPAPTATPAPGSTPGAPPAGRPGAPPP--GVRPGSPPAAG 268
Query: 527 VRCRRAAVAA---IPAAACRASSPTVQGRREPRRFPRRCARHPVRPPRSARGFPVSAVRR 583
A A PA A+ P+ GR P P P +A P +
Sbjct: 269 SPPAPGATPAPTTTPAPGGTATPPS--GRPGPASTP---------APGAATPAPTA---- 313
Query: 584 WCRPVPVRGSVVPRRPGTASDRPAPEPSRPGVVAGRRAAGCAGRPRRA 631
P G + PG P P P AG AAG P +A
Sbjct: 314 ----TPAPGGALTPPPGRPGAGPTPGPQGGTPPAGAPAAGTPAAPPQA 357
Score = 47.8 bits (112), Expect = 2e-04
Identities = 58/203 (28%), Positives = 68/203 (33%), Gaps = 42/203 (20%)
Query: 446 ATPHAPMRQATAGAGRPPGELHRLRRRSAVAAGSPPPARRGTPPG-----IAPRSPAGPR 500
A PH P A A PP R +A PPPA R PP AP+ P+ P
Sbjct: 75 APPHPPAAPPPAAA--PP-------RPAAPPPPPPPPAARPAPPPPPPPPAAPKQPSPPP 125
Query: 501 SAGPAGRRRLPPALRRLTLRAPPAMSVRCRRAAVAAIPAAACRASSPTVQGRREPRRFPR 560
+A P PP APPA A A P A A++P P R
Sbjct: 126 AAAPQQHAPTPPP------PAPPA-------ARPAPTPPAPPPAAAPQHAPPPPPPPAAR 172
Query: 561 RCARHPVRPPRSARGFPVSAVRRWCRPVPVRGSVVPRRPGTASD--RPAPEPS------- 611
P PP P A PV + RPG+ + PAP P+
Sbjct: 173 PTPTPPPPPPAGPAARPTPAPTATPTPVAPPPAAPTARPGSPAPAATPAPTPTPAPTATP 232
Query: 612 ------RPGVVAGRRAAGCAGRP 628
PG G AG G P
Sbjct: 233 APTATPAPGSTPGAPPAGRPGAP 255
Score = 47.0 bits (110), Expect = 4e-04
Identities = 84/316 (26%), Positives = 96/316 (30%), Gaps = 70/316 (22%)
Query: 331 GALGGPAGRARCAPDRACTVAGDGRRHPADRLGPDRPPGAP--------RALPQRPRRMP 382
G G P + P A A P P PP AP A P P P
Sbjct: 43 GPDGKPKQPPKGPPGAAPPAAPARPAAPPPAAAPPHPPAAPPPAAAPPRPAAPPPPPPPP 102
Query: 383 GGRPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTRTAPAQRRGRGAAHRRLDLLRRL 442
RP P AA + A P H T PA R A
Sbjct: 103 AARPAPPPPPPPPAAPKQPSPPPAAA---PQQHAPTP-PPPAPPAARPA----------- 147
Query: 443 RLPATPHAPMRQATAGAGRPPGELHRLRRRSAVAAGSPPPARRGTPPGIAPRSPAGPRSA 502
P P P A A PP PPPA R TP +P P A
Sbjct: 148 --PTPPAPPPAAAPQHAPPPP----------------PPPAARPTP------TPPPPPPA 183
Query: 503 GPAGRRRLPPALRRLTLRAPPAMSVRCRRAAVAAIPAAACRASSPTVQGRREPRRFPRRC 562
GPA R P + PP AA A P + A++P P P
Sbjct: 184 GPAARPTPAPTATPTPVAPPP--------AAPTARPGSPAPAATPAPTPTPAPTATPAPT 235
Query: 563 A-----RHPVRPPRSARGFPVSAVRRWCRPVPVRGSVVPRRPGTASDRPAPEPSRPGVVA 617
A P PP G P VR P GS P PG A+ P P+
Sbjct: 236 ATPAPGSTPGAPPAGRPGAPPPGVRP--GSPPAAGS--PPAPG-ATPAPTTTPA-----P 285
Query: 618 GRRAAGCAGRPRRAAS 633
G A +GRP A++
Sbjct: 286 GGTATPPSGRPGPAST 301
>gb|AAF12376.1|AE001863_1 (AE001863) adenine deaminase-related protein [Deinococcus
radiodurans]
Length = 376
Score = 54.3 bits (129), Expect = 2e-06
Identities = 129/460 (28%), Positives = 149/460 (32%), Gaps = 111/460 (24%)
Query: 83 AVQFGGPPGAAGQPAIRPGRAAA--DLSRRRLPVAARRPARRVAGQFRLAFGDARLHPWR 140
A G AG A+ GRA A +L R RPA R RLA G A H
Sbjct: 2 AHHLGATAACAGAAAVFSGRARAADELGNR----CRHRPALRGDDSARLA-GHAH-HTHF 55
Query: 141 GAADRPRPTALSSRPGRERGGRSAGKRLAAAGAVRRVRWPIAAGGRLQLRAQPAGQAP-- 198
GAA R + GR G + G+ + AG RRV P G RA AG A
Sbjct: 56 GAAGR-------TGTGRPAAGPAGGQ--SGAGEPRRVAHPALYSGGRADRAGRAGSAAGA 106
Query: 199 -------PTALAGPAAWLAGRCHAGLGATRDLRLGSPCAGLIECTAGLESAGLRFPIDPR 251
P G W++ R A G+ ++ R+ PR
Sbjct: 107 RYREILGPARPRGDRPWVSRRLRAAARLATLRGAGNLRGRRGSAARRRDAPPARWRRRPR 166
Query: 252 PATCGGGLRHARA-GHQP-VDRPRPGRAPGRRVRCQPGGPRPGSVEPARALAVGEPVGGF 309
G LR ARA H P V RP RA G R +P G R P RA V E +
Sbjct: 167 ARLGRGHLRSARALAHAPDVSRPDRHRACGAGQRRRPAGRR----RPLRARRVVELL--- 219
Query: 310 LHPLRAQSGSRCALPAGGCVFGALGGPAGRARCAPDRACTVAGDGRRHPADRLGPDRPPG 369
G R A RRHP + R G
Sbjct: 220 ------DVGQRPA--------------------------------RRHPGHQHSARRASG 241
Query: 370 APRALPQRPRRMPGGRPNRPGHAAVAAAERHL--RGSAGVAVLLPAAHLDTTRTAPAQRR 427
P +R RR P R G A A RH RG G + PA R PA R
Sbjct: 242 GPA---RRQRRGPA----RGGSGARTARRRHRPGRGRRGPRAVAPALRGSDDR--PASGR 292
Query: 428 GRGAAHRRLDLLRRLRLPATPHAPMRQATAGAGRPPGELHRLRRRSAVAAGSPPPARRGT 487
G RR P + R E R R S A + PARR
Sbjct: 293 G-----------RRCPGPGDGGGALAGLHLALSRHHPEFSRPERDSGAQADAARPARRD- 340
Query: 488 PPGIAPRSPAGPRSAGPAGRRRLPPA----LRRLTLRAPP 523
G AGP GR R P A LT+ PP
Sbjct: 341 ----------GVAIAGP-GRVRRPSAHASFALHLTIARPP 369
>dbj|BAA75913.1| (AB024601) uridylyl transferase [Pseudomonas aeruginosa]
Length = 900
Score = 54.3 bits (129), Expect = 2e-06
Identities = 146/549 (26%), Positives = 173/549 (31%), Gaps = 132/549 (24%)
Query: 147 RPTALSSRPGRERGGRSAGKRLAAAG----AVRRVRWPIAAGGRLQLRAQPAGQAPPTAL 202
RP+ R R+ GGR+ + G R P G LRA A A +L
Sbjct: 288 RPSVRLRRQRRQTGGRTLHAEVLPGGDGDLRAERPDHPALRGSHPALRAAGADPAAEQSL 347
Query: 203 AGPAAWLAGRCHAGLGATRDLRLGSPCAGLIECTAGLESAGLRFPIDPRPATCGGGLRH- 261
+A R H G A L+ S + L + G P P G RH
Sbjct: 348 P-----VARRLHRG-DAPERLQAHS-----VRPPGNLRADG------PAPGNQGRARRHH 390
Query: 262 ARAGHQPV-DRPR-PGRAPG-----RRVRCQPG-GPRPGSVEPARALAVGEPVGGFLHPL 313
+ A QP DR R P R P R V+ QPG P+P + EP R P+ + P
Sbjct: 391 SPAARQPTPDRRRVPPRHPQHQPVHRAVQEQPGYPPQPAADEPLRH---PRPLPAGVRPY 447
Query: 314 RAQSGSRCALPAGGCVFGALGGPAGRARCAPDRA---CTVAGDGRRH------------- 357
+R G GR PD+A AGDGR
Sbjct: 448 HRADAARPVPYLYG----------GRPHPQPDQAPAQAESAGDGREISAGEQDHRSSAQA 497
Query: 358 ---------PADRLGPDRPP-----GAPRALPQRPRRMPGGRPNR-------PGHAAVAA 396
P R GP R P G R L P G P PG A
Sbjct: 498 GTDLHRRSLPRHRQGPWRRPLGTRRGGRRGLLPEPPVAALGHPTGVLAGAEPPGDVDHRA 557
Query: 397 AERHLRGSAGVAVLLPAAHLDTTRTAPAQRRGRGAAHRRLDLLRRLRLPATPHAPMRQAT 456
+ LR + + D R RGR H+ L R PA
Sbjct: 558 TQGPLRPAGDLRFRPTGRRPDPPRLPVRAHRGRHQRHQPDALELLARQPA---------- 607
Query: 457 AGAGRPPGELHRLRRRSAVAAGSPPPARRGTPPGIAPRSPAGPRSAGP----AGRRR--L 510
P LHR + R A G P R PP + GPR G GR R +
Sbjct: 608 ------PAALHRDQARPAPRPGEPGGPRGADPPD----ADRGPRPTGTQRHRPGRCRAVM 657
Query: 511 PPALRRLTLRAPPAMSVRCRRAAVAAIPAAACRASSPTVQGRREPRRFPRRCA-----RH 565
PA RRL PA R R A P A R + P R R A R
Sbjct: 658 EPARRRLL----PAPHRRRRGLAHRGDPPAPGRRHAAGADQGNHPARVRERFADLHLRRR 713
Query: 566 PVRPPRSARGFPVSAVRRWCRPVPVRGSVVPRRPGTASDRPAPEPSRPGVVAGRRAAG-- 623
P R R RG G P PG A D +P P + RA G
Sbjct: 714 PARFLRGHRG--------------RHGPAQPEHPGRA-DHHLHQPVHPRYLYRARADGDS 758
Query: 624 CAGRPRRAA 632
P R A
Sbjct: 759 IGNNPERIA 767
>dbj|BAA96299.1| (AB035548) Orf5 [Streptomyces virginiae]
Length = 277
Score = 53.9 bits (128), Expect = 3e-06
Identities = 79/263 (30%), Positives = 92/263 (34%), Gaps = 33/263 (12%)
Query: 385 RPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTRTAPAQRRG--RGAAHRRLDLLRRL 442
R P H+A A E R A TA RG R A L ++ +
Sbjct: 17 RVGGPEHSARAVNEEGTRALLAEAERAGVRRFVQVGTASVYGRGVFRNAGPEHLPVVPQS 76
Query: 443 RLPATPHAPMRQATAGAG---RPPGELHRLRRRSAVAAGSPPPARRGTPPGIAPRSPAG- 498
T A R A G RP + R +G PPPA RG +A G
Sbjct: 77 PTSRTRAAAERLVLAAGGTVLRPHLVIGAGDRLGGPGSGPPPPAARGLRRRLAGPDVGGR 136
Query: 499 ---PRSAGPAGRRRLPPALRRLTLRAPPAMSVR--CRRAAVAAIPAAACRASSPTVQGRR 553
PR G RRR P LRRL + P +R RR A PA R + G
Sbjct: 137 RRRPRPCGDRRRRRPPGHLRRLARQPPRTGRLRPHLRRTGTPARPARGHRRHR-SRWGPS 195
Query: 554 EPRRFPRRCARHPVRPPRSARGFPVSAVRRWCRPVPVRGSVVPRRPGTASDRPAPEPSR- 612
PRR P P PPR A P+ R +P R PG R P P R
Sbjct: 196 PPRRAP-----GPAAPPRHADHRPL------VRQLPALAR--DRLPGRGHVRGEPRPPRL 242
Query: 613 --PGVVAGR-----RAAGCAGRP 628
P + R RA G AG P
Sbjct: 243 VVPRTTSRRTPQAGRADGHAGSP 265
Score = 43.9 bits (102), Expect = 0.003
Identities = 83/293 (28%), Positives = 103/293 (35%), Gaps = 68/293 (23%)
Query: 237 AGLESAGLRFPIDPRPATCGGG--LRHARAGHQPVDRPRPG---RAPGRRVRCQPGGPRP 291
A E AG+R + A+ G R+A H PV P RA R+ GG
Sbjct: 38 AEAERAGVRRFVQVGTASVYGRGVFRNAGPEHLPVVPQSPTSRTRAAAERLVLAAGGT-- 95
Query: 292 GSVEPARALAVGEPVGGFLHPLRAQSGSRCALPAGGCVFGALGGPAGRARCAPDRACTVA 351
+ P + G+ +GG GS PA + L GP R R C
Sbjct: 96 -VLRPHLVIGAGDRLGG--------PGSGPPPPAARGLRRRLAGPDVGGRRRRPRPC--- 143
Query: 352 GDGRRHPADRLGPDRPPGAPRALPQRPRRMPGGRPNRPGHAAVAAAERHLRGSAGVAVLL 411
GD RR RPPG R L ++P R RP HLR +
Sbjct: 144 GDRRRR--------RPPGHLRRLARQPPRTGRLRP-------------HLRRTG------ 176
Query: 412 PAAHLDTTRTAPAQRRGRGAAHRRLDLLRRLRLPATP-----HAPM-RQATAGA-GRPPG 464
T PA+ R + RR PA P H P+ RQ A A R PG
Sbjct: 177 -------TPARPARGHRRHRSRWGPSPPRRAPGPAAPPRHADHRPLVRQLPALARDRLPG 229
Query: 465 ELHRLRRRSAVAAGSPPPARRGTPPGIAPRSPAGPRSAGPAGRRRLPPALRRL 517
H G P P R P + R+P R+ G AG PPA R +
Sbjct: 230 RGH--------VRGEPRPPRLVVPRTTSRRTPQAGRADGHAGSPGGPPADREI 274
>gb|AAL77233.1|AF283711_1 (AF283711) putative 1-deoxy-D-xylulose 5-phosphate synthase
[Streptomyces coelicolor A3(2)]
Length = 218
Score = 52.4 bits (124), Expect = 9e-06
Identities = 73/216 (33%), Positives = 83/216 (38%), Gaps = 43/216 (19%)
Query: 372 RALPQRPRRMPGGRPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTRTAPAQRRGRGA 431
RA +RPR+ PG P H R LR G+ AH R P R RG
Sbjct: 29 RADHRRPRQPPGD----PAH------HRRLRAGPGLGQGRAPAH---ARGGP--HRLRGP 73
Query: 432 AHRRLDLLRRLRLPATPHAPMRQATAGAGRPPG-ELHRLRRRSAVA---AGSPP------ 481
A R+ L RLR AGA R PG E+ R RR+ G+PP
Sbjct: 74 ARRQEGLQGRLR------------PAGALRGPGTEVPRSDRRARHRRRRVGAPPREALPR 121
Query: 482 PARRGTPPGIAPRSPAGPRS-AGPAGRRRL-PPALRRLTLRAPPAMSVRCRRAAVAAIPA 539
P R P PR PA P GP RRR PP R L + VR RR A
Sbjct: 122 PGHRALPHREGPRLPARPPGRGGPLPRRRQDPPRHRPAHLHPRRRLDVRLRRRDAQARQG 181
Query: 540 AACRASSPTVQGRREPRRFPRRCARHPVRPPRSARG 575
A R GR P PR+ R + PR RG
Sbjct: 182 ARARGRH---HGRHAPAGRPRQ-VRQGLPRPRLRRG 213
>gb|AAK62482.1| (AY034092) MC8 [Micrococcus sp. 28]
Length = 787
Score = 52.4 bits (124), Expect = 9e-06
Identities = 149/549 (27%), Positives = 177/549 (32%), Gaps = 111/549 (20%)
Query: 45 RPASGVRPVRGDAA---------SGDR---LPVGLVALPGERSHRGDLGAAVQFGGPPGA 92
R GV PVRG A GDR PVG A+ G+ R + P G
Sbjct: 27 RRRHGVAPVRGSRARLQRAGGRSGGDRGATEPVGAAAMGGDIHPRSRV-----VRDPRGR 81
Query: 93 AGQPAIRPGRAAADLSRRRLPVAARRPA--RRVAGQFRLAFGDARLHPWRGAADRPRPTA 150
RP A+ + + R P R P+ R+ G R P G R TA
Sbjct: 82 TAHARPRPRPASREEAGRPSPRVRRPPSVETRMPPPPSTKTGRGRGRPGGGMGRRTHTTA 141
Query: 151 LSSRPG----RERGG---RSAGKRLAAAGAVRRVRWPIAAGGRLQLRAQPAGQAPPTALA 203
+ P E G R A R R P GR A P G P T
Sbjct: 142 RNGMPWPHQPTEEGATPHERPNHRGAGGAQARSGRGP---RGRRTREAGP-GDLPGTRRR 197
Query: 204 GPAAWLAGRCHAGLGATRDLRLGSPCAGLIECTAGLESAGLRF---PIDPRPATCGGGLR 260
+ R G R +P G AG AG R P R C G R
Sbjct: 198 RAPSNHRVRRRDGARERVAHRQAAPRRGRRR-RAGQRRAGARRRPGPPSTRGRQCSRGRR 256
Query: 261 -HARAGHQPVDRPRPGRAPGRRVRCQP--------GGPRPGSVEPARALAVGEPVGGFL- 310
AR G RP RR R +P P PG V P +AV E VGG
Sbjct: 257 GRARRGRGGRAGLRPDARGRRRARHRPQPTARLPAARPGPGQV-PGSGVAVFEVVGGLYL 315
Query: 311 ------HPLRAQSGSRC---ALPAGG--------CVFGALGGPAGRARCAPDRA---CTV 350
H LRA G L A G FG L G G+ +PD+ V
Sbjct: 316 SGLQGRHHLRAHHGLLLRGQGLTAPGEQFQAEIPAAFGPLIGLLGQH--SPDQTHHGIPV 373
Query: 351 AGDGRRH------PADRLG----PDRPPGAPRALPQRPR------RMPGGRPNRPGHAAV 394
D R P LG PD P PR +R +P R H
Sbjct: 374 REDPHRVRAAPDLPVQPLGRVVRPDLGPHVPRERGEREDVLSCCIEVPSHRGQPVLHVVQ 433
Query: 395 AAAERHLRGSAGVAVLLPAAHLDTTRTAPAQRRGRGAAHRRLDLLRRLRLPATPHAP--- 451
A E L G V+ H P RG G RR+ + A PH P
Sbjct: 434 QALELGLHGRPVGLVVHAVQH--GLHRRPHALRGHGHQIRRV-----MGAAALPHGPGQV 486
Query: 452 ----MRQATAGA-------GRPPGELHRLR-----RRSAVAAGSPPPARRGTPPGIAPRS 495
+A G G+PPG H++R RR+ + G P P P G+ P
Sbjct: 487 RRHGFHEAAMGVRGHQCHPGQPPG--HQVREELVPRRTRLRGGHPQPEDFAAPVGVDPGG 544
Query: 496 PAGPRSAGP 504
G R P
Sbjct: 545 DHGHRVDHP 553
Score = 43.9 bits (102), Expect = 0.003
Identities = 82/303 (27%), Positives = 100/303 (33%), Gaps = 45/303 (14%)
Query: 263 RAGHQPVDRPRPGRAP--GRRVRCQPGGPRPGSVEPARALAVGEPVGGFLHPL------- 313
R H+ V R R G AP G R R Q G R G A +GG +HP
Sbjct: 20 RRAHERVRR-RHGVAPVRGSRARLQRAGGRSGGDRGATEPVGAAAMGGDIHPRSRVVRDP 78
Query: 314 RAQSGSRCALPAGGCVFGALGGPAGRARCAPD-------RACTVAGDGRRHPADRLGPDR 366
R ++ P A G P+ R R P T G GR P +G
Sbjct: 79 RGRTAHARPRPRPASREEA-GRPSPRVRRPPSVETRMPPPPSTKTGRGRGRPGGGMGRRT 137
Query: 367 PPGAPRALP--QRPRRMPGGRPNRPGHAAVAAAE-RHLRGSAGVAVLLPAAHLDTTRTA- 422
A +P +P RP H A+ R RG G TR A
Sbjct: 138 HTTARNGMPWPHQPTEEGATPHERPNHRGAGGAQARSGRGPRG----------RRTREAG 187
Query: 423 ----PAQRRGRGAAHRRLDLLRRLRLPATPHAPMRQATAGAGRPPGELHRLRRRSAVAAG 478
P RR R ++ R+ R R A RQA GR R +R A A
Sbjct: 188 PGDLPGTRRRRAPSNHRV----RRRDGARERVAHRQAAPRRGRR----RRAGQRRAGARR 239
Query: 479 SP-PPARRGTPPGIAPRSPAGPRSAGPAGRRRLPPALRRLTLRAPPAMSVRCRRAAVAAI 537
P PP+ RG R A G AG R RR R P + R +
Sbjct: 240 RPGPPSTRGRQCSRGRRGRARRGRGGRAGLRPDARGRRRARHRPQPTARLPAARPGPGQV 299
Query: 538 PAA 540
P +
Sbjct: 300 PGS 302
>gb|AAF10059.1|AE001907_5 (AE001907) penicillin-binding protein 1 [Deinococcus radiodurans]
Length = 873
Score = 52.0 bits (123), Expect = 1e-05
Identities = 44/136 (32%), Positives = 49/136 (36%), Gaps = 15/136 (11%)
Query: 478 GSPPPARRGTPPGIAPRSPAGPRSAGPAGRRRLPPALRRLTLRAPPAMSVRCRRAAVAAI 537
GS TPP + P P + PAGR P LRR T R P + R A+
Sbjct: 715 GSRRATXXATPPAVTAPEPPQPATTTPAGRS--PAPLRRRTRRTLPRQTSPRR-----AL 767
Query: 538 PAAACRASSPTVQGRREPRRFPRRCARHPVRPPRSARGFPVSAVRRWCRPVPVRGSVVPR 597
P+ CR P R PR R A P SA P RR R P
Sbjct: 768 PSRTCRPRRPLSPPPRRPRPGATRRANRRRTSPPSATRCPTCPRRRLSR--------CPA 819
Query: 598 RPGTASDRPAPEPSRP 613
P S RP P RP
Sbjct: 820 TPRPLSRRPVTPPGRP 835
Score = 49.7 bits (117), Expect = 6e-05
Identities = 65/195 (33%), Positives = 71/195 (36%), Gaps = 44/195 (22%)
Query: 435 RLDLLRRLRLPATPHA------PMRQATAGAGRPPGELHRLRRRSAVAAGSPPPARRGTP 488
R D RR ATP A P T AGR P L R RR+ SP RR P
Sbjct: 712 RHDGSRRATXXATPPAVTAPEPPQPATTTPAGRSPAPLRRRTRRTLPRQTSP---RRALP 768
Query: 489 PGIAPRSPAGPRSAGPAGRRRLPPALRRLT-LRAPPAMSVRCRRAAVAAIPAAACRASSP 547
R+ R P RR P A RR R P + RC P
Sbjct: 769 ----SRTCRPRRPLSPPPRRPRPGATRRANRRRTSPPSATRC-----------------P 807
Query: 548 TVQGRREPR--RFPRRCARHPVRPPRSARGFPVSAVRRWCRPVPVRGSVVPRRPGTASDR 605
T RR R PR +R PV PP G P A RR +P R + P RP S
Sbjct: 808 TCPRRRLSRCPATPRPLSRRPVTPP----GRPFQARRR----IP-RLRIPPTRPRLPS-- 856
Query: 606 PAPEPSRPGVVAGRR 620
P P P R G R
Sbjct: 857 PPPRPRRTAPTPGYR 871
>emb|CAC41624.1| (AJ318089) putative DNA-binding protein [Bifidobacterium animalis]
Length = 299
Score = 51.6 bits (122), Expect = 1e-05
Identities = 80/258 (31%), Positives = 94/258 (36%), Gaps = 56/258 (21%)
Query: 381 MPGGRPN--RPGHAAVAAAE------RHLRGSAGVA---VLLPAAHLDTTRTAPAQRR-- 427
M GGRP R GHA A R RG A VA V P D R PA RR
Sbjct: 1 MGGGRPGGARAGHAVARAGRPVLLGARDRRGRARVAPRRVRRPVRDRDR-RPDPALRRQA 59
Query: 428 GRGAAH---------RRLDLLRRLRLPATPHAPMRQATAGAGRPPGELHRLRRRSAVAAG 478
G+ A H R+D R R+ T R G R+RR A
Sbjct: 60 GKTAGHGAGPFRPGASRMDAGARRRVHKT-------------RRGGRHGRVRRLEAGRRI 106
Query: 479 SPPPARRGTPPGIAPRSPAGPRSAGPAGRRRLPPALRR---LTLRAPPAMSVRCRRAAVA 535
P RG P PR G R P + LPPA RR + A+ ++ R A
Sbjct: 107 RRAPRGRGHRP--VPRRATGRR---PRHQGALPPATRRHRQARCQGRQALRLQARPADQR 161
Query: 536 AIPAAA--CRASSPT-----VQGRREPRRFPRRCARHPVRPPRSARGFPVSAVRRWCRPV 588
IP C+ P + PRR P+ R PVR + R A RR
Sbjct: 162 RIPRRTRPCQTHGPVRHPGQPRPHARPRRLPKGHTRLPVRRQATRRTHDARADRR----- 216
Query: 589 PVRGSVVPRRPGTASDRP 606
P R + R PGT RP
Sbjct: 217 PDRTGALQRLPGTRLPRP 234
>gb|AAK20149.1| (AY027524) hypothetical protein [Frankia sp. CpI1]
Length = 524
Score = 51.2 bits (121), Expect = 2e-05
Identities = 136/457 (29%), Positives = 159/457 (34%), Gaps = 125/457 (27%)
Query: 3 APAAVPRL-ATGATPGHAQARGLGRPEWRDPGTAAIDGLCADRRPASGVRPVRGDAASGD 61
A A VP L A GA G A A R R A R SG RG + SG
Sbjct: 60 AAAGVPGLIAAGAVAGTAAAARTVRVAQRR---------AASRASTSGGGAGRGRSGSGP 110
Query: 62 RLPVGLVALPGERSHRGDLGAAVQFGGPPGAAGQPAIRPGRAAADLSRRRLPVAARRP-- 119
+P L L G RG GG PG G+ A G RRR RRP
Sbjct: 111 -VPAALRRLAGAGRRRGA-------GGGPGT-GKGA---GTGTGTGRRRRGAGTGRRPGS 158
Query: 120 ------ARRVAGQFRLAFGD----ARLHPWRGAADRPRPTALSSRPGRERG--------- 160
A R AG R G AR + A R A + R R RG
Sbjct: 159 GRAGGAAGRTAGGRRAGGGPLTRAARGTGGQAARAARRSGAAAVRAARLRGAGMVRAARI 218
Query: 161 GRSAGKRLAAAGAVRRVRWPIAAGGRLQLRAQPAGQAPPTALAGPAAWLAGRCHAGLGAT 220
GRSA RLAAA R W A R AGQ R G G
Sbjct: 219 GRSAAGRLAAAVRQARSPWAAARAARRGRYRMVAGQ---------------RRRRGGGLG 263
Query: 221 RDLRLGSPCAGLIECTAGLESAGLRFPIDPRPATCGGGLRHARAGHQPVDRPRPGRAPGR 280
R +R G GL+ A L + G + + R G R RAG + + PRPG GR
Sbjct: 264 RLVRTG---LGLL---AALAAVG--WWLGHR------GWRLTRAGWRRLRGPRPG-PDGR 308
Query: 281 RVRCQPGGPRPGSVEPARALAVGEPV--------GGFLHPLRAQSGSRCALPAGGCVFGA 332
PG G + R +G P GG + P +G+R AL G F
Sbjct: 309 -----PGTDLIGPLAQLRTPPIGGPAAPVPPPAGGGAMDPQAILAGARAAL--AGVAFAT 361
Query: 333 LGGPAGRARCAPDRACTVAGDGRRHPADRLGPDRP--PGAPRALPQRPRRMPGGRPNRPG 390
G R P P+ P PG P A MPG + G
Sbjct: 362 FG---------------------RLPE---MPEMPPIPGGPVA-----SLMPG---HDRG 389
Query: 391 HAAVAAAE---RHLRGSAGVAVLLPAAHLDTTRTAPA 424
AA+AA + R L G +G LLP +TA A
Sbjct: 390 DAAMAARDRDGRSLAGGSGGVFLLPEQAETMMQTAAA 426
Score = 48.9 bits (115), Expect = 1e-04
Identities = 103/350 (29%), Positives = 115/350 (32%), Gaps = 48/350 (13%)
Query: 181 IAAGGRLQLRAQPAGQAPPTAL----AGPAAWLAGRCHAGLGATRDLRLGSPCAGLIEC- 235
I+ G + PA APP AGP AG AG+ A L + GLI
Sbjct: 14 ISGGWTPVVEETPAPPAPPVRRRGVPAGPVIIAAGE--AGVMAGSSLYAAAGVPGLIAAG 71
Query: 236 -TAGLESAGLRFPIDPRPA-----TCGGGLRHARAGHQPVDRPRPGRAPGRRVRCQPGGP 289
AG +A + R A T GGG R+G PV A R R GGP
Sbjct: 72 AVAGTAAAARTVRVAQRRAASRASTSGGGAGRGRSGSGPVPAALRRLAGAGRRRGAGGGP 131
Query: 290 RPGSVEPARALAVGEPVGGFLHPLRAQSGSRCALPAGGCVFGALGGPAGRARCAPDRACT 349
G G G A +G R P G GA G AG R A T
Sbjct: 132 GTGK-------GAGTGTGTGRRRRGAGTGRR---PGSGRAGGAAGRTAG-GRRAGGGPLT 180
Query: 350 VAGDGRRHPADRLGPDRPPGAPRALPQRPRRM-PGGRPNRPGHAAVAAAERHLRGSAGVA 408
A G A R A RA R M R R +AAA R R A
Sbjct: 181 RAARGTGGQAARAARRSGAAAVRAARLRGAGMVRAARIGRSAAGRLAAAVRQARSPWAAA 240
Query: 409 VLLPAAHLDTTRTAPAQRRGRGAAHRR-----LDLLRRLRLPA--TPHAPMRQATAGAGR 461
AA R QRR RG R L LL L H R AG
Sbjct: 241 ---RAARRGRYRMVAGQRRRRGGGLGRLVRTGLGLLAALAAVGWWLGHRGWRLTRAG--- 294
Query: 462 PPGELHRLRRRSAVAAGSP------PPARRGTPPGIAPRSPAGPRSAGPA 505
RLR G P P A+ TPP P +P P + G A
Sbjct: 295 ----WRRLRGPRPGPDGRPGTDLIGPLAQLRTPPIGGPAAPVPPPAGGGA 340
>emb|CAD55362.1| (AL939124) probable translational initiation factor [Streptomyces
coelicolor A3(2)]
Length = 1033
Score = 50.8 bits (120), Expect = 3e-05
Identities = 104/341 (30%), Positives = 121/341 (35%), Gaps = 65/341 (19%)
Query: 85 QFGGPPGAAGQPAIRPGRAAADLSRRRLPVAARRPARRVAGQFRLAFGDARLHPWRGAAD 144
Q GG +AG+PA P +AA S A PA+ Q A GD R AA
Sbjct: 52 QGGGNGRSAGRPAA-PKKAAPRPS-------APSPAQAGPSQAAPAAGD------RAAA- 96
Query: 145 RPRPTALSSRPGRERGGRSAGKRLAAAGAVRRVRWPIAAGGRLQLRAQPAGQAPPTALAG 204
PRP+A P ++ + A + R P A A P APP A A
Sbjct: 97 -PRPSAAPKAPAAQQPAAPSAPAPAPSQGPRPTPGPKPAPRPAP--AAPEFTAPPAAPAA 153
Query: 205 PAAWLAGRCHAGLGATRDLRLGSPCAGLIECTAGLESAGLRFPIDPRPATCGGGLRHARA 264
P+ G R G+P G G +G P R G G R
Sbjct: 154 PSTPAPAPSGPKPGGARP---GAPKPG------GARPSG---PGQDRGQQGGQG----RP 197
Query: 265 GHQPVDRPRPGRAPGRRVRCQPGGPRP--------GSVEPARALAVGEPVGGFLHPLRAQ 316
G Q RPG AP +R +PGGPRP G+ AR A P GG +
Sbjct: 198 GGQ-----RPG-APAQRPGGRPGGPRPGNNPFTSGGNAGMARPSA-PRPQGG------PR 244
Query: 317 SGSRCALPAGGCVFGALGGPAGRAR-CAPDRACTVAGDGRRHPADRLGPDRPPGAPR--- 372
G P GG GG G R AP G R GP RP G PR
Sbjct: 245 PGGPGGAPGGGPRPQGPGGQGGGPRPQAPGGNRPSPGSMPRPQGGGAGP-RPGGGPRPNP 303
Query: 373 -ALPQR----PRRMPGGRPNRPGHAAVAAAERHLRGSAGVA 408
+PQR PR PGG PG A G G A
Sbjct: 304 GMMPQRPAAGPRPGPGGGGRGPGGAGRPGGGGGRPGGGGFA 344
Score = 49.7 bits (117), Expect = 6e-05
Identities = 85/292 (29%), Positives = 93/292 (31%), Gaps = 54/292 (18%)
Query: 368 PGAPRALPQRPRRMPGGRPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTRTAPAQRR 427
P AP+ RP P P AA AA +R A PAA +APA
Sbjct: 63 PAAPKKAAPRPSA-PSPAQAGPSQAAPAAGDRAAAPRPSAAPKAPAAQQPAAPSAPAPAP 121
Query: 428 GRGA--------AHRRLDLLRRLRLP-ATPHAPMRQATAGAGRPPGELHRLRRRSAVAAG 478
+G A R P A P AP A A +G PG + A
Sbjct: 122 SQGPRPTPGPKPAPRPAPAAPEFTAPPAAPAAPSTPAPAPSGPKPGGARPGAPKPGGARP 181
Query: 479 SPPPARRGT------PPGIAPRSPA--------GPR-------SAGPAGRRRLPPALRRL 517
S P RG P G P +PA GPR S G AG R P A
Sbjct: 182 SGPGQDRGQQGGQGRPGGQRPGAPAQRPGGRPGGPRPGNNPFTSGGNAGMAR-PSA---- 236
Query: 518 TLRAPPAMSVRCRRAAVAAIPAAACRASSPTVQGRREPRRFPRRCARHPVRPPRSARGFP 577
P R P R P QG + P P PR G
Sbjct: 237 -----PRPQGGPRPGGPGGAPGGGPRPQGPGGQGGGPRPQAPGGNRPSPGSMPRPQGG-- 289
Query: 578 VSAVRRWCRPVPVRGSVVPR-RPGTASDRPAPEPSRPGVVAGRRAAGCAGRP 628
P P G PR PG RPA P RPG G R G AGRP
Sbjct: 290 ------GAGPRPGGG---PRPNPGMMPQRPAAGP-RPGPGGGGRGPGGAGRP 331
Score = 45.8 bits (107), Expect = 8e-04
Identities = 77/283 (27%), Positives = 92/283 (32%), Gaps = 48/283 (16%)
Query: 247 PIDPRPATCGGGLRHARAGHQPVDRPRPGRAPGRRVRCQPG-----------GPRPG-SV 294
P P PA G AG + PRP AP QP GPRP
Sbjct: 73 PSAPSPAQAGPSQAAPAAGDRAA-APRPSAAPKAPAAQQPAAPSAPAPAPSQGPRPTPGP 131
Query: 295 EPARALAVGEPVGGFLHPLRAQSGSRCALPAGGCVFGALGGPAGRARCAPDRACTVAGDG 354
+PA A P F P A + PA G G AR + G
Sbjct: 132 KPAPRPAPAAPE--FTAPPAAPAAPSTPAPAPS------GPKPGGARPGAPKPGGARPSG 183
Query: 355 RRHPADRLGPDRPPGAPRALPQRPRRMPGGRPN--RPGHAAVAAAERHLRGSAGVAVLLP 412
+ G PG R P P + PGGRP RPG+ + G+AG+A P
Sbjct: 184 PGQDRGQQGGQGRPGGQR--PGAPAQRPGGRPGGPRPGNNPFTSG-----GNAGMA--RP 234
Query: 413 AAHLDTTRTAPAQRRGRGAAHRRLDLLRRLRLPATPHA----PMRQATAGAGRPPGELHR 468
+A P G R P P P QA G PG + R
Sbjct: 235 SAPRPQGGPRPGGPGGAPGGGPR---------PQGPGGQGGGPRPQAPGGNRPSPGSMPR 285
Query: 469 LRRRSAVAAGSPPPARRGTPPGIAPRSPAGPRSAGPAGRRRLP 511
+ AG P PG+ P+ PA GP G R P
Sbjct: 286 PQ---GGGAGPRPGGGPRPNPGMMPQRPAAGPRPGPGGGGRGP 325
Score = 45.1 bits (105), Expect = 0.001
Identities = 95/365 (26%), Positives = 117/365 (32%), Gaps = 50/365 (13%)
Query: 1 MDAPAAVPRLATGATPGHAQARGLGRPEWRDPGTAAIDGLCADRRPASGVRPVRGDAASG 60
++AP V +L G R GRP + S P GD A+
Sbjct: 38 IEAPV-VRKLTDAFQQGGGNGRSAGRPAAPKKAAPRPSAPSPAQAGPSQAAPAAGDRAAA 96
Query: 61 DRLPVGLVALPGERSHRGDLGAAVQFGGP-PGAAGQPAIRPGRAAADLSRR-RLPVAARR 118
R A ++ A GP P +PA RP AA + + P A
Sbjct: 97 PRPSAAPKAPAAQQPAAPSAPAPAPSQGPRPTPGPKPAPRPAPAAPEFTAPPAAPAAPST 156
Query: 119 PARRVAGQFRLAFGDARLHPWRGAADRPRPT-ALSSRPGRERG-----GRSAGKRLAAA- 171
PA +G P P+P A S PG++RG GR G+R A
Sbjct: 157 PAPAPSGP----------KPGGARPGAPKPGGARPSGPGQDRGQQGGQGRPGGQRPGAPA 206
Query: 172 -------GAVRRVRWPIAAGGRLQLRAQPAGQAP--------PTALAGPAAWLAGRCHAG 216
G R P +GG + A+P+ P P G G G
Sbjct: 207 QRPGGRPGGPRPGNNPFTSGGNAGM-ARPSAPRPQGGPRPGGPGGAPGGGPRPQGPGGQG 265
Query: 217 LGATRDLRLGS-PCAGLIECTAGLESAGLRFPIDPRPATCGGGLRH--ARAGHQPVDRPR 273
G G+ P G + G AG PRP GGG R +P PR
Sbjct: 266 GGPRPQAPGGNRPSPGSMPRPQG-GGAG------PRP---GGGPRPNPGMMPQRPAAGPR 315
Query: 274 PGRAPGRRVRCQPGGPRPGSVEPARALAVGEPVGGFLHPLRAQSGSRCALPAGGCVFGAL 333
PG G R G P G P G P GG G P GG FG
Sbjct: 316 PGPGGGGRGPGGAGRPGGGGGRPGGGGFAGRPGGGG-GGRPGGGGGFAGRPGGGGGFGGG 374
Query: 334 GGPAG 338
GG G
Sbjct: 375 GGRPG 379
>gb|AAK24164.1| (AE005891) hypothetical protein [Caulobacter crescentus CB15]
Length = 424
Score = 50.4 bits (119), Expect = 3e-05
Identities = 97/314 (30%), Positives = 111/314 (35%), Gaps = 68/314 (21%)
Query: 271 RPRPGRAPGRRVRCQPGGPRPGSVEPARALAVGEPVGGFLHPLRAQSGSRCALP-----A 325
RP RAP RR R + GP AL+V + V RC P A
Sbjct: 10 RPDRRRAPARRARARRPGP--------FALSVADRV-------------RCVRPQGRHGA 48
Query: 326 GGC---VFGALGGP------AGRARCAPD--------RACTVAGDGR--RHPADRLGPDR 366
GG + A GG RAR P RAC GD R RH +D R
Sbjct: 49 GGLHRELLHARGGDEIRRLRRDRARWRPHRPGSGLHARACAGGGDDREARHLSDHHRSAR 108
Query: 367 PPGAPRALPQRP----RRMPG-GRPNR-----PGHAAVAA--AERHLRGSAGVAVLLPAA 414
P L Q RR+ G GR +R PG A A+R G+A +P
Sbjct: 109 RPRGQGGLGQGRVGVLRRLQGAGRRHRHAEPDPGRRLCDARRAQRCGLGAARQGSGVPGR 168
Query: 415 HLDTTRTAPAQRRGRGAAHRRLDLLRRLRLPATPHAPMRQATAGAGRPPGELHRLRRRSA 474
RR RGA RR R PA P+R+ GA R RR
Sbjct: 169 DPSQQDRHRPGRRVRGAV-RRQARGRPANHPARRRRPLRRHQGGAQDAEERRQRPLRRPG 227
Query: 475 VAAGSPPPARRGTPPGIAPRSPAGPRSAGPAGRRRLPPALRRLTLRAPPAMSVRCRRAAV 534
A G P P PR A PR AGP L P LR L P M R A
Sbjct: 228 RAVGRLP------DPVALPRRRARPRPAGP--ELHLRPDLRIPPLSERPVMKTRTLLTAA 279
Query: 535 AAIP--AAACRASS 546
A+ A A A+S
Sbjct: 280 VALSLIAGAAHAAS 293
>emb|CAC09556.1| (AL939115) hypothetical protein SCE41.24c [Streptomyces coelicolor
A3(2)]
Length = 889
Score = 50.4 bits (119), Expect = 3e-05
Identities = 138/522 (26%), Positives = 163/522 (31%), Gaps = 93/522 (17%)
Query: 24 LGRPEWRDPGTAAIDGLCADRRPASGVRPVRGDAA-SGDRLPVGLVALPGERSHRGDLGA 82
L PEW I DRR G G A SG LP +P + G A
Sbjct: 110 LSPPEWLQEAADRIG--IPDRRRGDGEAGATGGAGGSGGALPQTQAGVPAAPAASGPSPA 167
Query: 83 AVQFGGPPGA-AGQPAIRPGRAA----ADLSRRRLPVAARRPARRV--AGQFRLA-FGDA 134
GG G+ AG PA G +A AD P A PA AG A GD
Sbjct: 168 ----GGSSGSGAGWPAAGSGSSAGGSGADAGASGAPSAPGVPAGATPWAGTDTNADAGDD 223
Query: 135 RLHPWRGAA----------DRPRPTALSSRPGRERGGRSAGKRLAAAGAVRRVRWPIAAG 184
R P D P P+ S G S A + A+ P A
Sbjct: 224 RSVPLPQTVFAPPLSGVDDDTPPPSTTSDAKTALMSGGSGLPPTALSPAIGDPNAPGAPA 283
Query: 185 GRLQLRAQPAGQAPPTALAGPAAWLAGRCHAGLGA-TRDLRLGSPCAGLIECTAGLESAG 243
G AG PP A P A + AG GA R +P AG I A ++
Sbjct: 284 G--------AGTPPPAAPTAPPA----QPPAGPGAPATPPRPLAPDAGDIADAATSKAT- 330
Query: 244 LRFPIDPRPATCGGGLRHARAGHQPVDRPRPGRAPGRRVRCQPGGPRPGSVEPARALAVG 303
P P GG + RPG P PG P G V ++G
Sbjct: 331 ------PPPRRGGGSSTPPPPSAPGMPGARPGSTPAPSGPPAPGAPAGGYVPTQLVSSLG 384
Query: 304 -EPVGGFLHPLRAQSGSRCALPAGGCVFGALGGPAGRARCAPDRACTVAGDGRRHPADRL 362
E GG P + + P G G P AP+ G H A L
Sbjct: 385 PEGPGGPGTPPPPSAPATPPAPGATPPPGTPGTPPPPPPSAPNAPGGTPPGGMHHAATML 444
Query: 363 G-PDRPPGAPRALPQRPRRMPGGRPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTRT 421
P R G PQ P P G PN PG A PAA
Sbjct: 445 ADPGRTGGGA---PQPPG--PPGPPNPPGPPGPPGA--------------PAA--PGAPG 483
Query: 422 APAQRRGRGAAHRRLDLLRRLRLPATPHAPMRQATAGAGRPPGELHRLRRRSAVAA---- 477
AP G G P P AP Q +AG G +H + A +
Sbjct: 484 APGVPSGPGVP------------PPPPGAPGAQGSAGGAG--GAVHHAQTVLAAPSLGGP 529
Query: 478 ---GSPPPARRGTPPGIAPRSPAGPRSAG----PAGRRRLPP 512
G+PPP PP P P + G P G+ + P
Sbjct: 530 GGIGAPPPPPGAVPPPPGQPVPGQPPAYGYPPQPTGQPTVGP 571
Score = 46.6 bits (109), Expect = 5e-04
Identities = 119/489 (24%), Positives = 146/489 (29%), Gaps = 100/489 (20%)
Query: 55 GDAASGDRLPVGLVALPGERSHRGDLGAAVQFGGPPGAAGQPAIRPGRAAADLSRR---- 110
G+A LPVG V E + G P A PA P A DL++
Sbjct: 63 GEATLWPSLPVGEVIRRYEEEY-----------GRPEEAQAPAAAPA-ARVDLNQTSFLL 110
Query: 111 -----------RLPVAARRPARRVAGQFRLAFGDARLHPWRGAADRPRPTALSSRPGRER 159
R+ + RR AG A G P A P A P
Sbjct: 111 SPPEWLQEAADRIGIPDRRRGDGEAGATGGAGGSGGALPQTQAGVPAAPAASGPSPAGGS 170
Query: 160 GGRSAGKRLAAAGAVRRVRWPIAAGGRLQLRAQPAGQAPPTALAGPAAWLAGRCHAGLGA 219
G AG A +G+ +AGG + P AG W +A G
Sbjct: 171 SGSGAGWPAAGSGS--------SAGGSGADAGASGAPSAPGVPAGATPWAGTDTNADAGD 222
Query: 220 TRDLRLGSPCAGLIECTAGLESAGLRFPIDPRPATCGGGLRHARAGHQPVDRPRPGRAPG 279
R + L P +G++ D P P
Sbjct: 223 DRSVPL--PQTVFAPPLSGVDD----------------------------DTPPPSTTSD 252
Query: 280 RRVRCQPGGPR--PGSVEPARA--LAVGEPVGGFLHPLRAQSGSRCALPAGGCVFGALGG 335
+ GG P ++ PA A G P G P A + PAG G
Sbjct: 253 AKTALMSGGSGLPPTALSPAIGDPNAPGAPAGAGTPPPAAPTAPPAQPPAGP------GA 306
Query: 336 PAGRAR-CAPDRACTV-AGDGRRHPADRLGPDRPPGAPRALPQRPRRMPGGRPNRPGHAA 393
PA R APD A + P R G P + P P PG P G A
Sbjct: 307 PATPPRPLAPDAGDIADAATSKATPPPRRGGGSSTPPPPSAPGMPGARPGSTPAPSGPPA 366
Query: 394 VAAAERHLRGSAGVAVLLPAAH----LDTTRTAPAQRRGRGAAHRRLDLLRRLRLPATPH 449
A + V+ L P +APA GA P TP
Sbjct: 367 PGAPAGGYVPTQLVSSLGPEGPGGPGTPPPPSAPATPPAPGATPPP-------GTPGTPP 419
Query: 450 APMRQA-TAGAGRPPGELHR----LRRRSAVAAGSPPPARRGTPPGIAPRSPAGPRSAGP 504
P A A G PPG +H L G+P P PPG P +P GP GP
Sbjct: 420 PPPPSAPNAPGGTPPGGMHHAATMLADPGRTGGGAPQPP---GPPG--PPNPPGP--PGP 472
Query: 505 AGRRRLPPA 513
G P A
Sbjct: 473 PGAPAAPGA 481
>gb|AAC33839.1| (U93363) 2-aminomuconic acid semialdehyde dehydrogenase
[Pseudomonas pseudoalcaligenes]
Length = 542
Score = 50.4 bits (119), Expect = 3e-05
Identities = 79/248 (31%), Positives = 93/248 (37%), Gaps = 59/248 (23%)
Query: 229 CAGLIECTAGLESAGLRFPIDPRPATCGGGLRHARAGHQ------PVDRPRPGRA-PG-- 279
CA L+E G++ + +P DP P G R+GH+ P RPR GR PG
Sbjct: 303 CAALVERIKGMK---IDWPQDP-PGEQGRPEDPHRSGHRGYPCPSPARRPRAGRCRPGDL 358
Query: 280 RRV-RCQPG-GPRPGS------VEPARALA-----VGEPVG-GFLHPLRAQSGSRCALP- 324
RR+ R QPG P PG+ RA A VG+P G R +G P
Sbjct: 359 RRIPRAQPGCRPSPGADSQWPRTVARRAAAESAGDVGDPGGRASCGAARRSAGGAQRGPH 418
Query: 325 -AGGCVFGALGGP------AGRARCAPDRACTVAGDGRRHPADRLG-PDRPPGAPRALPQ 376
GG G G AG A AP AG G+R A P R P R L +
Sbjct: 419 VPGGYPLGTAGATRRVHRAAGAAGGAPG-----AGGGKRQRAGLSSRPGRDPPRSRRLAR 473
Query: 377 RPRRMPGG---------RPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTRTAPAQRR 427
P R P G RP RP A H +G AG R P RR
Sbjct: 474 SPWRTPRGAALPAAWRARPRRPARRHRAGVAGHAQGGAGD---------QHRRDQPDHRR 524
Query: 428 GRGAAHRR 435
G RR
Sbjct: 525 RTGGDRRR 532
>gb|AAA21754.1| (L20249) homologous to Saccharopolyspora erythraea beta-ketoacyl
synthase [Streptomyces coriofaciens]
Length = 527
Score = 50.4 bits (119), Expect = 3e-05
Identities = 108/381 (28%), Positives = 133/381 (34%), Gaps = 76/381 (19%)
Query: 256 GGGLRHARAGHQP--VDRPRPGRAPGR---------RVRCQPGGPRPGSVEPARAL---A 301
G G R RA +P + RP PG +P R+ P PR S P A A
Sbjct: 124 GPGDRGGRAALRPPRLRRPCPGPSPRSPRSARPQLARIATSPAPPRSTSATPCTARLLRA 183
Query: 302 VGEPVGGFLHPLRAQSGSRCALPAGGC-VFGALGGPAGRARCAPDRACTVAGDGRRHPAD 360
P GG H R ++G A P G GAL GP A AG GR
Sbjct: 184 PRGPAGG--HRRRGRAGGGGAGPCRGAQARGALPGPGFPA----------AGMGRELY-- 229
Query: 361 RLGPDRPPGAPRALPQRPRRMPGGRPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTR 420
+R P +AL + + A V + R GS A+L + T+
Sbjct: 230 ----ERYPVFAKALDEITALLDP----ELDRACVRCSSR-TEGSETAALLDTTGY---TQ 277
Query: 421 TAPAQRRGRGAAHRRLDLLRRLRLPATPHAPMRQATAGAGRPPGELHRLRRRSAVAAGSP 480
A + R A RR R P TP A R A R R R + G
Sbjct: 278 PASSPWRWPCTACWSRRACRRSRGPVTPSA--RSA------------RARGRGLLPGGRL 323
Query: 481 PPARRGTPP--GIAPRSPAGP-----RSAGPAGRRRLPPALRRLTLRAPPAMSVRCRRAA 533
P RR PP G A R P P R A R LP +R LR R RA
Sbjct: 324 PAGRRPRPPDAGTARRRPMAPCRHRGRGRPTADRGTLPRCGQRPGLRGRVRPGERSDRAG 383
Query: 534 VAAI-----PAAACRASSPTVQGRREPRRFPRRCA---RHPVRPPRSARGFPVSAVRRWC 585
AACR+++P+ R R R P R S+ P + R
Sbjct: 384 RRVCGRRTQDPAACRSATPSTPRSRNRSSSSARSPAPWRTPNRASPSSPTSPAPSPRPVS 443
Query: 586 RPVPVRGSVVPRRPGTASDRP 606
P+P G GT+ DRP
Sbjct: 444 SPIPSTGC------GTSGDRP 458
Score = 47.4 bits (111), Expect = 3e-04
Identities = 110/383 (28%), Positives = 128/383 (33%), Gaps = 78/383 (20%)
Query: 235 CTAGLESAGLRFPIDPRPATCGGGLRHARAGHQPVDRPRPGRAPGRRVRCQPGGPRPGSV 294
CTA L LR P P GG R RAG R +A G PG P G
Sbjct: 176 CTARL----LRAPRGP----AGGHRRRGRAGGGGAGPCRGAQARGALPG--PGFPAAGMG 225
Query: 295 E------PARALAVGEPVGGFLHPLRAQSGSRCALPAGGCVFGALGGPAGRARCA----- 343
P A A+ E + L P ++ RC+ G AL G + A
Sbjct: 226 RELYERYPVFAKALDE-ITALLDPELDRACVRCSSRTEGSETAALLDTTGYTQPASSPWR 284
Query: 344 -PDRACTVAGDGRRHPADRLGPDRPPGAPRALPQRPR--------RMPGGRPNRPGHAAV 394
P AC RR R P P A R R R+P GR RP A
Sbjct: 285 WPCTACWSRRACRR--------SRGPVTPSARSARARGRGLLPGGRLPAGRRPRPPDAGT 336
Query: 395 A-----AAERHL--------RGSAGVAVLLPAAHLDTTRTAPAQRRGRGAAHRRLDLLRR 441
A A RH RG+ P + R GR RR
Sbjct: 337 ARRRPMAPCRHRGRGRPTADRGTLPRCGQRPGLRGRVRPGERSDRAGRRVCGRRTQDPAA 396
Query: 442 LRLPATPHAPM-RQATAGAGRPPGELHRLRRRSAVAAGSPPPARRGTPPGIAPRSPAGPR 500
R ATP P R ++ + R P R S + SP P+ R SP
Sbjct: 397 CR-SATPSTPRSRNRSSSSARSPAPWRTPNRASPSSPTSPAPSPRPVS------SPIPST 449
Query: 501 SAGPAGRRRLPPALRRLTLRAPPAMSVRCRRAAVAAIPAAACRASSPTVQGRR---EPRR 557
G +G R L LR L R A + A PAA SSP GR PR
Sbjct: 450 GCGTSGDRPLRRRLRALAERGADAY--------LEAGPAA----SSPPSPGRPWAPTPRP 497
Query: 558 FPRRCARHP---VRPPRSARGFP 577
PRR A+ P RP AR P
Sbjct: 498 SPRRAAQGPGRGARPAHRARHAP 520
>gb|AAK62477.1| (AY034092) putative DNA-invertase [Micrococcus sp. 28]
Length = 526
Score = 50.1 bits (118), Expect = 4e-05
Identities = 94/351 (26%), Positives = 112/351 (31%), Gaps = 81/351 (23%)
Query: 258 GLRHARAGHQPVDRPRPGRAP--GRRVRCQPGGPRPGSVEPARALAVGEPVGGFLHPLRA 315
G R G P PRPGR P +R +P R G P+ A P+ P RA
Sbjct: 54 GAHRVRGGRAPRPHPRPGRRPCVHQRPAVEPAVARLGHRGPSDLGADRAPI-----PERA 108
Query: 316 QSGSRCALPAGGCVFGALGGPAGRARCAPDRACTVAGDGRRHPADRL----GPDRP---P 368
QS GP R R P G R A R+ GP P
Sbjct: 109 QSRDDRTRHMAHHP-SPPRGPRHRNRAHPHHRGRGRHAGERGRAQRVRVRHGPHPPFGLR 167
Query: 369 GAPRALPQRPRRMPG----GRPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTRTAPA 424
G R QRP P GR +RP H A+ R G + HL R A
Sbjct: 168 GHGRGTGQRPLHPPAAGRRGRRHRPLHRAIRNPHRPPPGQR-------SEHL--RRHGLA 218
Query: 425 QRRGRGAAHRRLDLLRRLRLPATPHAPMRQATAGAGRPPGELHRLRRRSAVAAGSPPPAR 484
G HRR+ R PG H R R P P
Sbjct: 219 GHSGHPRPHRRIT-----------------------RHPGPAHPARERRPPRHRRPNPQG 255
Query: 485 RGTPPGIAPRSPAGPRSAGPAGRRRLPPALRRLTLRAPPAMSVRCRRAAVAAIPAAACRA 544
G PG P+ P G GP R ALRR + PP + AA + R
Sbjct: 256 PGPRPGSTPQGPPG-LDQGPHRR-----ALRRRSSHRPPL----AQHAAPQGGHFRSIRV 305
Query: 545 SSPTVQGRREPRRFPRRCARHPVRPPRSARGFPVSAVRRWCRPVPVRGSVV 595
S+P P PR P+ P +P+P G+VV
Sbjct: 306 STP-------PHGAPRARENGPMPTPGQ-------------QPLPQPGAVV 336
Score = 49.3 bits (116), Expect = 7e-05
Identities = 76/255 (29%), Positives = 84/255 (32%), Gaps = 52/255 (20%)
Query: 364 PDRPPGAPR---ALPQRPRRMPGGRPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTR 420
P+RPPGA R RP PG RP AV A L G G + L R
Sbjct: 49 PERPPGAHRVRGGRAPRPHPRPGRRPCVHQRPAVEPAVARL-GHRGPSDLGADRAPIPER 107
Query: 421 TAPAQRRGRGAAHRRLDLLRRLRLPATPHAPMRQATA-----GAGRPPGELHRLRRRSAV 475
R R AH P+ P P + A G GR GE R +R
Sbjct: 108 AQSRDDRTRHMAHH----------PSPPRGPRHRNRAHPHHRGRGRHAGERGRAQRVRVR 157
Query: 476 AAGSPPPARRGTPPGIAPRSPAGPRSAGPAGRRRLP--PALRRLTLRAPPAMSVRCRRAA 533
PP RG G R P P +AG GRR P A+R P S RR
Sbjct: 158 HGPHPPFGLRGHGRGTGQR-PLHPPAAGRRGRRHRPLHRAIRNPHRPPPGQRSEHLRRHG 216
Query: 534 VAAIPAAACRASSPTVQGRREPRRFPRRCARHP--------VRPPRSARGFPVSAVRRWC 585
+A G R RR RHP RPPR R P
Sbjct: 217 LA---------------GHSGHPRPHRRITRHPGPAHPARERRPPRHRRPNPQG------ 255
Query: 586 RPVPVRGSVVPRRPG 600
P P GS PG
Sbjct: 256 -PGPRPGSTPQGPPG 269
>gb|AAF10038.1|AE001904_14 (AE001904) hypothetical protein [Deinococcus radiodurans]
Length = 839
Score = 50.1 bits (118), Expect = 4e-05
Identities = 110/410 (26%), Positives = 132/410 (32%), Gaps = 51/410 (12%)
Query: 247 PIDPRPA-TCGGGLRHARAGHQPVDRPRPGRAPGRRVRCQPGGPRPGSVEPARALAVGEP 305
P+ P+PA T L+ A PV +P P AP + P P P P +A A P
Sbjct: 167 PVTPKPAPTPPEVLQPPVAQTPPVAKP-PVPAPTSQTPTPPVQPAPTRTPPPQA-ARPTP 224
Query: 306 VGGFLHPLRAQSGSRCALPAG--------GCVFGALGGPAGRARC-APDRACTVAGDGRR 356
P A P A PAG A AP A A G
Sbjct: 225 NAPAQTPAPATQAPAAQTPTAQAPATQTPATPAPAAQRPAGGAPSPAPAPAQANAPAGSV 284
Query: 357 HPADRLGPDRPPGAPRA----LPQRPRRMPGGRPNRPGHAAVA---AAERHLRGSAGVAV 409
P + P AP A P R P P +A A A + G G A
Sbjct: 285 VPEATVPESSTPAAPSAQTPPTPTRETAQTEASPAAPNSSAAAPNEPASEPVAGRPGTAA 344
Query: 410 LLPAAHLDTTRTAPAQRRGRGAAHRRLDLLRRLRLPATPHAPMRQATAGAGRPPGELHRL 469
P + T T + A+ R P AP A A R PG
Sbjct: 345 SSPESASPVTVTPRGETPDTAASAGTPSAGRVTPAP----APSASEGASAARTPG----- 395
Query: 470 RRRSAVAAGSPPPARRGTPPGIAPRSPAGPRSAGPAGRR-RLPPAL----RRLTLRAPPA 524
AGS P TP P + SAG A R PA R P
Sbjct: 396 -------AGSQTPPIPATPIPATPAGRSSGESAGTAAARPNAAPAPVSEDRSDVSGLPRR 448
Query: 525 MSVRCRRAAVAAIPAAACRASSPTVQGRREPRRFPRRCARHPVRPPRSARGFPVSAVRRW 584
+ VAA PA ++ + P R P + V PR+A PV+
Sbjct: 449 EDAPAESSPVAASPARGASSAPSSAPAAAVPSRAP--VSGGSVSAPRTAPTAPVAEQGE- 505
Query: 585 CRPVPVRGSVVPRRPGTASDRPAPEPSRPGVVAGRRAAGCAGRPRRAASA 634
VPV S R G +S A PS P A R +G AG ASA
Sbjct: 506 ---VPVSPSAAAPRGGASS---AAAPSAP--AAARGGSGAAGGAAGGASA 547
Score = 44.7 bits (104), Expect = 0.002
Identities = 98/392 (25%), Positives = 123/392 (31%), Gaps = 74/392 (18%)
Query: 4 PAAVPRLATGA----TPGHAQ-----------ARGLGRPEWRDPGTAAIDGLCADRRPAS 48
PA P + GA TPG A GR GTAA RP +
Sbjct: 378 PAPAPSASEGASAARTPGAGSQTPPIPATPIPATPAGRSSGESAGTAAA-------RPNA 430
Query: 49 GVRPVRGDAASGDRLPVGLVALPGERSHRGDLGAAVQFGGPPGAAGQPAIRPGRAA---A 105
PV D + LP A P E S V GA+ P+ P A A
Sbjct: 431 APAPVSEDRSDVSGLPRREDA-PAESS-------PVAASPARGASSAPSSAPAAAVPSRA 482
Query: 106 DLSRRRLPVAARRPARRVAGQFRLAFGDARLHPWRGAADRPRPTALSSRPGRERGGRSAG 165
+S + P VA Q + + P GA+ P+A ++ G A
Sbjct: 483 PVSGGSVSAPRTAPTAPVAEQGEVPVSPSAAAPRGGASSAAAPSAPAAARGGSGAAGGAA 542
Query: 166 KRLAAAGAVRRVRWP-----IAAGGRLQLRAQPAGQAPPTALAGPAAWLAGRCHAGLGAT 220
+A A R + P A+GG + A+P+ P+ A AGR G G+
Sbjct: 543 GGASAPAAARPAQTPGASAGGASGGGEGVSARPSQGGTPSGTPASAPVAAGRPAGGEGS- 601
Query: 221 RDLRLGSPCAGLIECTAGLESAGLRFPIDPRPATCGG-------GLRHARAGHQPVDRPR 273
+G +G P RP G GL R G
Sbjct: 602 ---------------GSGTSGSGSGAPAAARPGQGGSGDAPVDLGLTSGRGGS---GAGN 643
Query: 274 PGRAPGRRVRCQPGGPRPGSVEPARALAVGEPVGGFLHPLRAQSGSRCALPAG-----GC 328
G G P RPGS GE G R GS G G
Sbjct: 644 GGAGTGETGAGTPSASRPGSGGTGNGSGTGEGSGTVPASGRGTGGSGTGTGNGGGAGEGA 703
Query: 329 VFGAL---GGPAGRARCAPDR--ACTVAGDGR 355
GA+ GG AG+ R CTV D R
Sbjct: 704 GVGAVARGGGGAGQGAGNETRPLTCTVVVDVR 735
>gb|AAC82365.1| (AF055904) unknown [Myxococcus xanthus]
Length = 542
Score = 50.1 bits (118), Expect = 4e-05
Identities = 81/283 (28%), Positives = 94/283 (33%), Gaps = 55/283 (19%)
Query: 272 PRPGRAPGRRVRCQPGGPRPGSVEPARALAVGEPVGGFLHPLRAQSGSRCALPAGGCVFG 331
P P PG C P P P S P R G F +SG RC P+
Sbjct: 45 PPPQAVPGP---CAPRAP-PRSPPPRRRHR-GSRHRSFRPTCARRSGRRCPAPSRH---- 95
Query: 332 ALGGPAGRAR-CAPDRACTVAGDGRRHPADRLGPDRPPGAPRALPQRPRRMPGGRPNRPG 390
A PAG +R C P R T P P P RA P P G G
Sbjct: 96 ARRNPAGPSRRCGPPRKST--------PTRCCTPCPAPPRCRARPSAPAPSAGRTCPTAG 147
Query: 391 HAAVAAAERHLRGSAGVAV------LLPAAHLDTTRTAPAQRRGRGAAHRRLDLLRRLRL 444
++ A+ G G A P+ + APA GR H R
Sbjct: 148 PSSCASGCCPT-GRCGSAPGPTPHGAEPSPPSQSPSPAPASSGGRRRTHPR--------- 197
Query: 445 PATPHAPMRQATAGA------------GRPPGELHRLRRRSAVAAGSPPPARRGTPPGIA 492
P R + AGA GRP R S A+ PPP GTPP +
Sbjct: 198 ------PARASAAGATAPACLPPPRCCGRPGTGCARTAPPSTSASHPPPPRSPGTPPRAS 251
Query: 493 PRSPAGPRSAGPAGRRRLP---PALRRLTLRAPPAMSVRCRRA 532
A P PA R P PA R L A P +S +RA
Sbjct: 252 GSPAAAPAPPSPACRPPPPGTTPAPRNAALPALPCISPSRQRA 294
Score = 43.1 bits (100), Expect = 0.005
Identities = 63/201 (31%), Positives = 74/201 (36%), Gaps = 31/201 (15%)
Query: 456 TAGAGRPPGELHRLRRRSAVAAGSPPPARRGTPPGIAPRSPAGPRS--AGPAGRRR---- 509
T GRP L R+ A PP PP A P PR+ P RRR
Sbjct: 13 TPAPGRPFPPPCLLSERTPPGARPPPTETASYPPPQAVPGPCAPRAPPRSPPPRRRHRGS 72
Query: 510 ----LPPALRRLTLRAPPAMSVRCRRAAVAAIPAAAC---RASSPTVQGRREPRRFPRRC 562
P R + R PA S RR A P+ C R S+PT P P RC
Sbjct: 73 RHRSFRPTCARRSGRRCPAPSRHARRN--PAGPSRRCGPPRKSTPT--RCCTPCPAPPRC 128
Query: 563 ARHPVRP-PRSARGFPV---SAVRRWCRPVPVRGSV---VPR--RPGTASDRPAPEPSRP 613
P P P + R P S+ C P GS P P S P+P P+
Sbjct: 129 RARPSAPAPSAGRTCPTAGPSSCASGCCPTGRCGSAPGPTPHGAEPSPPSQSPSPAPASS 188
Query: 614 GVVAGRRAAGCAGRPRRAASA 634
G GRR RP RA++A
Sbjct: 189 G---GRRRT--HPRPARASAA 204
>gb|AAA26482.1| (M83110) ORF homologous to Escherichia coli and Salmonella
typhimurium dnaE gene; putative [Saccharopolyspora
erythraea]
Length = 285
Score = 50.1 bits (118), Expect = 4e-05
Identities = 100/335 (29%), Positives = 118/335 (35%), Gaps = 71/335 (21%)
Query: 256 GGGLRH---ARAGHQPVDRPRPGRAPGRRVRCQPGGPRPGSVEPARALAVGEPVGGFLHP 312
GGG H A AG +PV RP R GRR R G V A A AV H
Sbjct: 2 GGGRGHRAQAPAGARPV---RPVRRRGRR-------RRRGVVVAAGAPAV--------HA 43
Query: 313 LRAQSGSRCALPAGGCVFGALGGPAGRARCAPDRACTVAGDGRRHPADRL-------GPD 365
R + + L AG LG P+GR R A A V G R R G D
Sbjct: 44 GRVAAQADALLRAGDAGPLRLGPPSGRGRAA---ARAVPGHRHRRARRRRARGGQGPGQD 100
Query: 366 RPPGAPRALPQRPRRMPGGRPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTRTAPAQ 425
R P + R P G + G R RG A +LP D R
Sbjct: 101 RRDDLGDPAPHQQERPPVGDRDPGG-------PRRQRGGA----VLPEVLRDVRRLPARG 149
Query: 426 RRGRGAA-HRRLDLLRRLRLPATPHAPMRQATAG--AGRP-PGELHRLRRRSAVAAGSPP 481
R RG H+R + H +R+ G GR PG R+R + A G P
Sbjct: 150 HRDRGEGPHQRARGHHQ-------HLRLRRGAGGHLGGRDRPGNQPRVRDQGAGEQGGPV 202
Query: 482 PARRGTP--PGIAPRSPAGPRSAGPAGRRRLPPALRRLTLRAPPAMSVRCRRAAVAAIPA 539
RR G P G R A A R P A++RL +R R
Sbjct: 203 AGRRAQAHLAGALGHGP-GAREAAGAARGHPPRAVQRL---------LRVDRER------ 246
Query: 540 AACRASSPTVQGRREPRRFPRRCARHPVRPPRSAR 574
AA RA +G RR A P+R PR R
Sbjct: 247 AAGRAEGAARRGVLRDGAVSRRGAASPLRAPRPLR 281
>gb|AAK62518.1| (AY034092) putative minor silk ampullate protein [Micrococcus sp.
28]
Length = 821
Score = 49.7 bits (117), Expect = 6e-05
Identities = 105/401 (26%), Positives = 130/401 (32%), Gaps = 67/401 (16%)
Query: 12 TGATPGHAQARGLGRP--EWRDPGTAAIDGLCADRRPASGVRPV--RGDAASGDRLPVGL 67
+ A G A A G G E+ D GT A G A A GV R DA+ GD G+
Sbjct: 413 SSADNGAAGAAGSGASSAEFSDQGTGAAGGTSAAGTGAGGVDGTVDRVDASDGDDSGAGV 472
Query: 68 V-----------ALPGERSHRGDLGAAVQFGGPPGAAGQPAIRP---------------- 100
AL G + R G A GG +A P +RP
Sbjct: 473 NPAAGGASPISGALAGTAAGRAAAGVAPAAGGQSASAAAPGVRPLNSKDKSGEGASQTGV 532
Query: 101 --GRAAADLSRRRLPVAARRPARRVAGQFRLAFGDARLHPWRGAADRPRPTALSSRPGRE 158
G A A + + A R AG +A GA A+S R G
Sbjct: 533 GQGGAVAGGANGSAAAKDGKAADRPAGAGAIAAASPSSAVASGAG------AVSGRGGES 586
Query: 159 RGGRSAGKRLA--AAGAVRRVRWPI------------------AAGGRLQLRAQPAGQAP 198
G AG A AAG R P AAG + PA
Sbjct: 587 GSGDGAGASSAGGAAGTSGREEAPAGEASGGVETPELSGGAAPAAGETVGAGETPAWPVD 646
Query: 199 PTALAG----PAAWLAGRCHAGLGATRDLRLGSPCAGLIECTAGLES-AGLRFPIDPRPA 253
A++G AA G A G + G P G + G + G+ + +PA
Sbjct: 647 SAAISGGASSGAAPAGGESPAVSGDLSPVSGGVPSGGAPAASGGSPAGGGVSGEVLAQPA 706
Query: 254 TCGGGLRHARAGHQ-PVDRPRPGRAPGRRVRCQPGGPRPGSVEPARALAVGEPVGGFLHP 312
GG G V P PGR PG G +V+ R ++ G P G
Sbjct: 707 GWAGGSDGPDDGPSGMVAAPVPGRGPGSARPAASRGSSSRTVQ-TRTVSTGAPGVGAAST 765
Query: 313 LRAQSGSRCALPAGGCVFGALGGPAGR-ARCAPDRACTVAG 352
A S + A GG GR AR D T AG
Sbjct: 766 TGASSSKQERRMERRRAVRARGGRMGRAARTVADVRATTAG 806
Score = 48.5 bits (114), Expect = 1e-04
Identities = 124/501 (24%), Positives = 163/501 (32%), Gaps = 100/501 (19%)
Query: 78 GDLGAAVQFGGPPGAAGQPAIRPGRAAADLSRRRLPVAARRPARRVAGQFRLAFGDARLH 137
G A + GG G G A G AA P +AG G A
Sbjct: 325 GAAAGAARAGGAAGGGGSAAAGGGGAAG-------------PGGGLAG------GGAAAE 365
Query: 138 PWRGAADRPRPTALSSRPGRERGGRSAGKRLAAAGAVRRVRWPIAAGGRLQLRAQPAGQA 197
GA + TA ++ G G + AGK AAG A+GG A AG +
Sbjct: 366 TAGGA----KGTAGATASGDTAGAKGAGKEPGAAGG-------SASGGADNGAAGAAGSS 414
Query: 198 PPTALAGPAAWLAGRCHAGLGATRDLRLGSPCAGLIECTAGLESAGLRFPIDPRPAT--- 254
AG A +G + G+ AG AG + G+ +D A+
Sbjct: 415 ADNGAAGAAG-------SGASSAEFSDQGTGAAGGTS-AAGTGAGGVDGTVDRVDASDGD 466
Query: 255 -CGGGLRHARAGHQPVDRPRPGRAPGRRVRCQPGGPRPGSVEPARALAVGEPVGGFLHPL 313
G G+ A G P+ G A GR V PA + PL
Sbjct: 467 DSGAGVNPAAGGASPISGALAGTAAGRAA---------AGVAPAAGGQSASAAAPGVRPL 517
Query: 314 RA-----QSGSRCALPAGGCVFGALGGPAGRARCAPDRACTVAGDGRRHPADRLGPDRPP 368
+ + S+ + GG V G G A A DG+ DRP
Sbjct: 518 NSKDKSGEGASQTGVGQGGAVAGGANGSA------------AAKDGK-------AADRPA 558
Query: 369 GA-------PRALPQRPRRMPGGRPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTRT 421
GA P + GR G A A G+AG + A + +
Sbjct: 559 GAGAIAAASPSSAVASGAGAVSGRGGESGSGDGAGAS-SAGGAAGTSGREEAPAGEASGG 617
Query: 422 APAQRRGRGAAHRRLDLLRRLRLPATP---HAPMRQATAGAGRPPGELHRLRRRSAVAAG 478
GAA + + PA P A A++GA GE S +G
Sbjct: 618 VETPELSGGAAPAAGETVGAGETPAWPVDSAAISGGASSGAAPAGGE-------SPAVSG 670
Query: 479 SPPPARRGTPPGIAPRSPAG-PRSAGPAGRRRLPPALRRLTLRAP---PAMSVRC---RR 531
P G P G AP + G P G +G PA P P+ V R
Sbjct: 671 DLSPVSGGVPSGGAPAASGGSPAGGGVSGEVLAQPAGWAGGSDGPDDGPSGMVAAPVPGR 730
Query: 532 AAVAAIPAAACRASSPTVQGR 552
+A PAA+ +SS TVQ R
Sbjct: 731 GPGSARPAASRGSSSRTVQTR 751
>gb|AAK49004.1| (AY033403) USC3-5p [Myxococcus xanthus]
Length = 575
Score = 49.7 bits (117), Expect = 6e-05
Identities = 70/243 (28%), Positives = 80/243 (32%), Gaps = 41/243 (16%)
Query: 385 RPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTRT----APAQRRGRGAAHRRLDLLR 440
RP RP + A A R A L H + R+ QRRGR A+ LR
Sbjct: 52 RPQRPAXRSAAIASTXPRSXAKAGTLATPTHGSSNRSKRPNPRQQRRGRNASRADRGALR 111
Query: 441 RLRLPATPHAPMRQATAGAGR---PPGELHRLRRRSAVAAGSPPPARRGTPPGIAPRSPA 497
R T P AG R P +R R R P A T G AP +PA
Sbjct: 112 RACAAGTARVP----PAGPARRRSPSRSRNRWRLRCGTRPAPAPWAAMTTVAGSAP-APA 166
Query: 498 GPRSAGPAGRRRLPPALRRLTLRAPPAMSVRCRRAAVAAIPAAACRASSPTVQGRRE-PR 556
P R L P RA + PAA C S P GR P
Sbjct: 167 RP---------------ARAVLPRAPLQRTAAPRAGPSGCPAARCPGSCPPGAGRSSWPM 211
Query: 557 RFPR-RCARHP------VRPPRSARGFPVSAVRRW-----CRPVPVRGSVVPRRPGTASD 604
++ R R R P PP + SAV RW C R PRR D
Sbjct: 212 QYRRARRVRRPSPPCRLPAPPGPCQRRAASAV-RWHRHAQCPARRWRSRTAPRRSVHTRD 270
Query: 605 RPA 607
A
Sbjct: 271 TSA 273
>gb|AAF11688.1|AE002048_8 (AE002048) ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 552
Score = 49.7 bits (117), Expect = 6e-05
Identities = 82/246 (33%), Positives = 91/246 (36%), Gaps = 46/246 (18%)
Query: 366 RPPGAP----RALPQRPRRMPGGRPNRPGHAAVAAAERHLRGSAGVAVLLPAA---HLDT 418
RPPG R PR G P R G AA A R +A A A H D
Sbjct: 79 RPPGTRHRHRRGAGAAPRPFADG-PARRGAAAGGAERRRQNHAAAAARRASCARERHPDV 137
Query: 419 T--RTAPAQRRG------RGAAHRRLDLLRRLRLPATPHAPMRQATAGAG---------- 460
RT A RR RG A RR +L RL T A R+A G G
Sbjct: 138 CARRTGSAFRRAGAAYPERGGAGRR-GVLSHSRL-GTDRA--RRAAGGRGGRTPAAVGSD 193
Query: 461 ----RPPGELHRLRRRSAVA-AGSPPPARRGTPPGIAPRSPAGPRS---AGPAGRRRLPP 512
RP G RR A+A A P R PPG AGPR A PA RR+
Sbjct: 194 ARTTRPVGRGDYTDRRGALAGARLSHPLARAAPPG-----DAGPRPDARAAPAAARRIHR 248
Query: 513 ALRRLTLRAPPAMSVR--CRRAAVAA-IPAAACRASSPTVQGRREPRRFPRRCARHPVRP 569
R R P + C V A P A + G R RR RR AR P+R
Sbjct: 249 WPERSGPRRPRRRAAPGPCGGHGVGAGDPPARGSPDAELAHGVRSGRRTERRAARLPIRS 308
Query: 570 PRSARG 575
PR + G
Sbjct: 309 PRYSGG 314
>emb|CAA55649.1| (X79027) unknown [Microbacterium ammoniaphilum]
Length = 529
Score = 49.3 bits (116), Expect = 7e-05
Identities = 112/391 (28%), Positives = 132/391 (33%), Gaps = 83/391 (21%)
Query: 248 IDPRPATCGGGLRHARAGHQPVDRPRPGRAPGRRVRCQPGGPRPGSVEPA------RALA 301
I PAT R A A P P P + R +P G G++EP R A
Sbjct: 18 IPTSPATTSSTCRTAPAASAPASTAEPHAGPAKPGRAEPRG--TGTIEPRGSHYRHRRPA 75
Query: 302 VGEPVGGFLHPLR---AQSGSRCALPAGGCVFGALGGPAGRARCAPDRACTVAGDGRR-- 356
V HPL+ + G+R LP A R R P R A D RR
Sbjct: 76 QRRQV----HPLQRPHQEPGARGELP-------VRDDRAERGRREPAR--PAARDARRHL 122
Query: 357 ----HPADRLGPDRPPGAPRALPQR--------PRRMPGGRPNRPGHAAVAAAERHLRGS 404
HPA R G R RA +R PR+ P GR +R G + R R
Sbjct: 123 RLGAHPA-RRGVLRRHRRHRARGERGRGPRQQVPRQHPRGRRDRAGRPGLHRRRRRARRR 181
Query: 405 AGVAVLLPAAHLDTTRTAPAQRRGRGAAHRRLDLLRRLRLPATPHAPMRQATAGAGRPPG 464
G P R G R D RR R P H P+R+ G
Sbjct: 182 QG---------------RPQVRHGDD--QHRAD-PRRPRDPRAGHHPLREGGQGQ----- 218
Query: 465 ELHRLRRRSAVAAGSPPPARRGTPPGIAPRSPAGPRSAGPAGRRRLPPALRRLTLRA--- 521
E LR R G PA R G R P + A A R L L+R RA
Sbjct: 219 EARPLRARGG-QGGPGGPAGRHPALGDEDR-PRARQGARAAHREALHLRLQRRRGRADGC 276
Query: 522 -PPAMSVRCRRAAVAAIPAA--ACRASSPTVQGRREPRRFPR-----------RCARHPV 567
+ R RRA +P RA P +GR R R R RHP
Sbjct: 277 RAQGRARRARRAGGGGLPRREDRVRAHRPRPRGRGGAARLDRAGGVGARPARPRRLRHP- 335
Query: 568 RPPRSARGFPVSAVRRWCRPVPVRGSVVPRR 598
RP G P V R P + G+ RR
Sbjct: 336 RPADLPHGGP-QGVARLDHPQGLEGAAGSRR 365
Score = 47.0 bits (110), Expect = 4e-04
Identities = 91/310 (29%), Positives = 99/310 (31%), Gaps = 42/310 (13%)
Query: 335 GPAGRARCAPDRACTVAGDG----RRHPADRLG------PDRPPGAPRALPQRPRRMPGG 384
GPA R P T+ G R PA R P + PGA LP R R G
Sbjct: 47 GPAKPGRAEPRGTGTIEPRGSHYRHRRPAQRRQVHPLQRPHQEPGARGELPVRDDRAERG 106
Query: 385 RPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTRTAPAQRRGRGAAHRRLDLL-RRLR 443
R P A A RHLR A A RRG HRR R R
Sbjct: 107 R-REPARPAARDARRHLRLGAHPA-----------------RRGVLRRHRRHRARGERGR 148
Query: 444 LPA--TPHAPMRQATAGAGRPPGELHRLRRRSAVAAGSPPPARRGTPPGIAPRSPAGPRS 501
P P R AGRP LHR RRR+ G P PR P PR
Sbjct: 149 GPRQQVPRQHPRGRRDRAGRPG--LHRRRRRARRRQGRPQVRHGDDQHRADPRRPRDPR- 205
Query: 502 AGPAGRRRLPPALRRLTLRAPPAMSVRCRRAAVAAIPAAACRASSPTVQGRREPRRFPRR 561
AG L + R A + A A P R+ R R
Sbjct: 206 ---AGHHPLREGGQGQEARPLRARGGQGGPGGPAGRHPALGDEDRPRA---RQGARAAHR 259
Query: 562 CARHPVRPPRSARGFPVSAVRRWCRPVPVRGSVVPRRPGTA-SDRPAPEPSRPGVVAGRR 620
A H R R A R R G +PRR + RP P R G R
Sbjct: 260 EALHLRLQRRRGRADGCRAQGRARRARRAGGGGLPRREDRVRAHRPRPR-GRGGAARLDR 318
Query: 621 AAGCAGRPRR 630
A G RP R
Sbjct: 319 AGGVGARPAR 328
>emb|CAB37473.1| (AL939124) putative large Pro/Ala/Gly-rich protein [Streptomyces
coelicolor A3(2)]
Length = 1366
Score = 49.3 bits (116), Expect = 7e-05
Identities = 95/344 (27%), Positives = 117/344 (34%), Gaps = 70/344 (20%)
Query: 116 ARRPARRVAGQFRLAFGD---ARLHPWRGAADRPRPTALSSRPGRERGGRSAGKRL---- 168
AR P R A D AR+ GA R T L++ R GG +A L
Sbjct: 271 AREPVERAGVTREFAAFDTSGARVLGLVGAPGSGRTTELAALAARRSGGPAAAPTLWLRG 330
Query: 169 --------AAAGAVRRVR---------------WPIAAGG----RLQLRAQPAGQAPPTA 201
+ A A RR P+ G RL A+ AG+ A
Sbjct: 331 ADLHDDDMSLADAARRTLDRAARTVAAPDPDGPGPVGLGDVTPERLAHLARTAGRPLLVA 390
Query: 202 LAGPAAW---LAGRCHAGLGATRDLRLGSPCAGLIECTAGL-ESAGLRFPI----DPRPA 253
L GP LA R T + ++ C A E AG FP DP P
Sbjct: 391 LDGPEEMPPVLAHRLPEWTERTAAWLRETDTRLVVACRAEYWEHAGAEFPRELLHDPDPG 450
Query: 254 TCGGGLRHARAGHQPV---DRPRPGRAPGRRVRCQPGGPRPGSVEPARALAVGEPVGGFL 310
G A A +P + P P + PGG AVGE GG
Sbjct: 451 APSPGPTGAGAARRPTWAKEAPSPPASTAPEPWSGPGG------------AVGE-AGGVS 497
Query: 311 HPLRAQSGSRCALPAGGCVFGALGGPAGRARCAPDRACTVAGDGRRHPADRLGPDRPPGA 370
P GS G +FGA GG +G A P A + R P G PPGA
Sbjct: 498 SPGTGLRGSGTVAAGGVPLFGARGGVSGAAGGVPLPTVFTASEPRPGP----GGGLPPGA 553
Query: 371 PRALPQRPRRMPGGRPNR------PGHAAVAAAERHLRGSAGVA 408
A+P R GG ++ PG A A + G+ GVA
Sbjct: 554 EVAVPGRGPEAAGGGSSQGIGVWEPGAGAAGGAP--VFGARGVA 595
>gb|AAD33689.1|AF136403_1 (AF136403) unknown [Pseudomonas aeruginosa]
Length = 413
Score = 49.3 bits (116), Expect = 7e-05
Identities = 77/268 (28%), Positives = 94/268 (35%), Gaps = 42/268 (15%)
Query: 284 CQPGGPRPGSVEPARALAVGEPVGGFLHPLRAQSGSRCALPAGGCVFGALGGPAGRARCA 343
C P PG+ A AVG P L P R + + PA PA RC
Sbjct: 179 CPPAADLPGAGRTLAATAVGHPG---LSPARLRPSPAGSSPAYRPRPSVAPAPATATRC- 234
Query: 344 PDRACTVAGDGRRHPADRLGPDRPPGAPRALPQRPRRMPGGRP----NRPGHAAVAAAER 399
P R+ RP P PR+ PG R R HAA+AA +R
Sbjct: 235 PARS------------------RPLADPAGQLHSPRQWPGHRRAPELGRAAHAALAAPDR 276
Query: 400 HLRGSAGVAVLLPAAHLDTTRTAPAQRRGRGAAHRRLDLLRRLRLPATPHAPMRQATAGA 459
+ G A AH + A A+ A+ LD L L P A A A A
Sbjct: 277 SVPGPAADRSPGAGAHARRAKRAHARPAAAVASGGGLD----LALAGQPLACRSGAPAAA 332
Query: 460 -GRPPGELHRLRRRSAVAAGSPPPARRGTPPGIAPRSPAGPRSAGPAGRRRL----PPAL 514
G PG + RR VA + P +RG A P PA + P A
Sbjct: 333 LGGSPGRVAAALRR--VAPRAQPVQQRG-----AASPPVPAMRCAPAACKGCCCWWPIAH 385
Query: 515 RRLTLRAPPAMSVRCRRAAVAAIPAAAC 542
R R+ S R RR +PAA C
Sbjct: 386 RYTCWRSRAPDSNRARRNCNWRLPAARC 413
>gb|AAD42854.1|AF159690_2 (AF159690) serine/threonine kinase PKN11 [Myxococcus xanthus]
Length = 789
Score = 48.9 bits (115), Expect = 1e-04
Identities = 90/344 (26%), Positives = 109/344 (31%), Gaps = 42/344 (12%)
Query: 193 PAGQAPPTALAGPAAWL-AGRCHAGLGATRDLRLGSPCAGLIEC--TAGLESAGL---RF 246
P +A P A + AGR L + D + +P L A L++A L
Sbjct: 328 PGAEASPVPREPTAVMMSAGRSGLALPTSPDEDVNAPTFVLPRRGEAAALDAAPLPPMAT 387
Query: 247 PIDPRPATCGGGL-RHARAGHQPVDRPRPGRAPGRRVRCQPGGPRPGSVEPARALAVGEP 305
P+ P PA + R A P PGR GPR G E AR A E
Sbjct: 388 PMMPLPAVASSPVPRGASFEGAP---STPGRQSRPEGMVAVSGPRSGGAEDARGAASSED 444
Query: 306 VGGFLHPLR-----AQSGSRC--ALPAGGCVFGALGGPAGRARCAPDRACTVAGDGRRHP 358
P R A SGS + P GG + G +G + A A D
Sbjct: 445 ARAEKTPSRGSGVPAVSGSARTPSRPEGGAAVASPSGSSGSLKLAS------AWDDE--- 495
Query: 359 ADRLGPDRPPGAPRALPQRPRRMPGGRPNRPGHAAVAAAERHLRGSAGVAVLLPA----- 413
D G P P PG R PG + V AA H G+ G A A
Sbjct: 496 -----DDDEEGTPSNT--EPEAHPGMRAAEPGASEVPAAGAHASGAEGPAASARASGAEG 548
Query: 414 -AHLDTTRTAPAQRRGRGA---AHRRLDLLRRLRLPATPHAPMRQATAGAGRPPGELHRL 469
AH + RG GA A L A P+ A R +
Sbjct: 549 RAHAFGSGVLGTSARGSGAEVPAGAHASGAESLEAGARASGPVASVAVPAARRQWAMGLA 608
Query: 470 RRRSAVAAGSPPPARRGTPPGIAPRSPAGPRSAGPAGRRRLPPA 513
G RGT P PA P A PA +P A
Sbjct: 609 VALGLAVVGGGVAVMRGTEEAAPPAVPAEPMVAAPAVDEPVPTA 652
>dbj|BAC74442.1| (AP005047) hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 369
Score = 48.5 bits (114), Expect = 1e-04
Identities = 108/392 (27%), Positives = 132/392 (33%), Gaps = 89/392 (22%)
Query: 81 GAAVQFGGPPGAAGQPAIRPGRAAADL-SRRRL----PVAARRPARRVAGQFRLAF-GDA 134
G+A GG G + G + A+ SRRRL AARR G + G
Sbjct: 32 GSAGDTGGASGNRAEATGGGGESGAEFRSRRRLGNRGDSAARRDDTADEGASGVTERGST 91
Query: 135 RLHPWR--GAADRPRPTALSSRPGRERGGRSAGKRLAAAGAVRRVRWPIAAGGRLQLRAQ 192
P R G+A P T G + G A G V R GG + A
Sbjct: 92 PELPLRTVGSAAEPDGTGALPCAGTDAEPDGTGALSCAGGRVGR------GGGAVGGDAA 145
Query: 193 PAGQAPPTA-LAGPAAWLAGRCHAGLGATRDLRLGSPCAGLIECTAGLESAGLRFPIDPR 251
A P GPA GRC AG GA +G+P P+ R
Sbjct: 146 EAACRPAVGGTVGPAPTAGGRCGAGGGA-----VGAP------------------PVVGR 182
Query: 252 PATCGG---GLRHARAGHQPVDRP-----RPGRAPGRRVRCQPGGPRPGSVEPARALAVG 303
P G G+R A+ P GR RR + G G P+ + V
Sbjct: 183 PPGVDGGTFGMRLAKGRSYDGGIPGRGFRAAGRGTARRGTAEGGSCGTGGTAPSVSREVA 242
Query: 304 EPVGGFLHPLRAQSGSRCALPAGGCVFGALGGPAGRARCAPDRACTVAGDGRRHPADRLG 363
P SR A P GG V G GG AGR RA + HP R G
Sbjct: 243 CP-------------SREAGPVGGGVVGR-GGTAGRGGMEARRASVL-----MHPPFRCG 283
Query: 364 PDRPPGAPRALPQRPRRMPGGRPNRPG-HAAVAAAERHLRGSAGVAVLLPAAHLDTTRTA 422
P A P P R G HA +HL GS PA T
Sbjct: 284 RAAPGPAGGVRP----------PVRSGLHAGYG---KHLAGS-------PATGRHTRPAG 323
Query: 423 PAQRR---GRGAAHRRLDLLRRLRLPATPHAP 451
P R G+G + RR+ + R+ P T +P
Sbjct: 324 PPSRAHPPGQGRSPRRVRVTLRVDTPVTGTSP 355
>dbj|BAC69982.1| (AP005030) hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 556
Score = 48.5 bits (114), Expect = 1e-04
Identities = 98/337 (29%), Positives = 107/337 (31%), Gaps = 92/337 (27%)
Query: 257 GGLRHARAG-----HQPVDRPR-PGRAPGRR-----VRCQPGGPRPGSVEPARALAVGE- 304
GG RH R H P RP PGR G R V GG R G + L+ G
Sbjct: 284 GGPRHQRGRGLRRRHPPRTRPAAPGRRAGDRRRGVLVHAVRGGAR-GPLRRRPRLSAGRA 342
Query: 305 ----PVGGFLHPL-RAQSGSRCALPAGGCVFGALGGPAGRARCAPDRACTVAGDGRRHPA 359
P+ G HP R G R L A G GP G A G RH
Sbjct: 343 RPRRPLPGRHHPADRRLLGGRLLLTASGRPRTLGAGPPGAA-------------GARHGD 389
Query: 360 DRLGPDRPPGAPRALPQRPRRMPGGRPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTT 419
D PR LP R GG P AVAA R R
Sbjct: 390 D----------PRTLPVRRAVRRGGARGGPAGHAVAARLRRRR----------------- 422
Query: 420 RTAPAQRRGRGAAHRRLDLLRRLRLPATPHAPMRQATAGAGRPPGELHRLRRRSAVAAGS 479
A+R R A RR LL P+ Q R PG H R
Sbjct: 423 ----ARRPRRHAGGRRPGLL-----------PLHQ----GHRRPG--HGTADRRPYGHPL 461
Query: 480 PP-PARRGTPPGIAPRSPAGPRSAGPAGRRRLPPALRRLTLRAPPAMSVRCRRAAVAAIP 538
PP P RG P P GP GR PP+ R A P RC +P
Sbjct: 462 PPDPGGRGGPGHPRPPLRDGPGEVSVGGR---PPSGGRHGGAAAPYAPARCTPLDRGGLP 518
Query: 539 AAACRASSPTVQGRRE--------PRRFPR-RCARHP 566
R +S QG + PRR RCA P
Sbjct: 519 RLTTRGASGAPQGEFQAPFLPGYGPRRVTHDRCAGPP 555
>gb|AAL42873.1| (AE009142) OmpA family protein [Agrobacterium tumefaciens str. C58
(U. Washington)]
Length = 754
Score = 48.1 bits (113), Expect = 2e-04
Identities = 91/387 (23%), Positives = 119/387 (30%), Gaps = 38/387 (9%)
Query: 272 PRPGRAPGRRVRCQPGGPRP-----GSVEPARALAVGEPVGGFLHPL--RAQSGSRCALP 324
P P R P + P PRP EP + A EP R + R P
Sbjct: 95 PEPQREPEPKREAAPAEPRPEPKREAPPEPQQREARPEPAPAPAEQPQERPRKPERAQEP 154
Query: 325 AGGCVFGALGGPAGRARCAPDRACTVAGDGRRHPADRLGPDRPPGAPRALPQRPRRMPGG 384
G PA + AP+ A + P ++P G P+RPR+
Sbjct: 155 QGE----GEQRPARQREAAPE-AAPAEQQPQERPRKPQKAEQPAGEGEQRPERPRKEKEP 209
Query: 385 RPNRPGHAAVAAAERHLRGSAGVAVLLPAAHLDTTRTAPAQR-------------RGRGA 431
AA + A P AP Q+
Sbjct: 210 AKEPAAEQQPAARPENAEQPAKPREPAPGKKPQVEEKAPEQKAEPAEKPVPEKKPAAPEP 269
Query: 432 AHRRLDLLRRLRLPATPHAPMRQATAGAGRPPGELHRLRRR-SAVAAGSPPPARRGTPPG 490
A + + PA P AP Q GR P E ++ +A G+P P G G
Sbjct: 270 AAKEAPVPTEAPTPARPPAPEAQPNPAPGRQPSEQPPVKSEPAAPLPGAPTPPPSGATTG 329
Query: 491 IAPRSPAGPRSAGPAGRRRLPPALRRLTLRAPPAMSVRCRRAAVAAIP---AAACRASSP 547
AP A P S + PP + +A + A +P AA S
Sbjct: 330 QAPAGEAVP-SQVAVPQTEAPPTTKEELDKAKAIAKDPSKTADTVILPVDKGAAVLDSDK 388
Query: 548 TVQ-----GRREPRRFPRRCARHPVRPPRSARGFPVSAVRRWCRPVPVRGSVVPRRPGTA 602
V+ RE RR R A P A A P PV+ + + G
Sbjct: 389 EVERSGNRQTREERRREREQAGDVKVPTSDAEAQRAGAAEGKAPPPPVKLEAITSQQGER 448
Query: 603 SDRPAPEPSRPGVVAGRRAAGCAGRPR 629
DR P+ RP V R GRPR
Sbjct: 449 IDR-RPQYERPDGV--REWQPREGRPR 472
Database: gbbct
Posted date: Sep 29, 2003 6:22 PM
Number of letters in database: 35,829,034
Number of sequences in database: 119,422
Database: /blastdb/gbbct/gbbct2.aso
Posted date: Sep 29, 2003 6:23 PM
Number of letters in database: 46,604,961
Number of sequences in database: 153,703
Database: /blastdb/gbbct/gbbct3.aso
Posted date: Sep 29, 2003 6:24 PM
Number of letters in database: 37,964,456
Number of sequences in database: 126,043
Database: /blastdb/gbbct/gbbct4.aso
Posted date: Sep 29, 2003 6:29 PM
Number of letters in database: 44,801,584
Number of sequences in database: 150,186
Database: /blastdb/gbbct/gbbct5.aso
Posted date: Sep 29, 2003 6:29 PM
Number of letters in database: 3,182,186
Number of sequences in database: 10,611
Lambda K H
0.321 0.139 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 240,284,853
Number of Sequences: 559965
Number of extensions: 12469914
Number of successful extensions: 41805
Number of sequences better than 1.0e-02: 100
Number of HSP's better than 0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 40836
Number of HSP's gapped (non-prelim): 533
length of query: 634
length of database: 168,382,221
effective HSP length: 123
effective length of query: 511
effective length of database: 99,506,526
effective search space: 50847834786
effective search space used: 50847834786
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 98 (42.4 bits)