Score E
Sequences producing significant alignments: (bits) Value
gb|AAG03418.1|AE004442_5 (AE004442) hypothetical protein [P... 384 e-106
emb|CAC49907.1| (AL603647) putative cell division protein F... 45 2e-04
emb|CAE41543.1| (BX640414) translation initiation factor IF... 45 3e-04
emb|CAE33738.1| (BX640446) translation initiation factor IF... 44 4e-04
dbj|BAA10292.1| (D64001) general secretion pathway protein ... 44 8e-04
gb|AAF18101.1|AF204400_1 (AF204400) FrgA [Myxococcus xanthus] 40 0.008
dbj|BAC46048.1| (AP005937) translation initiation factor IF... 40 0.008
>gb|AAG03418.1|AE004442_5 (AE004442) hypothetical protein [Pseudomonas aeruginosa PAO1]
Length = 200
Score = 384 bits (987), Expect = e-106
Identities = 196/200 (98%), Positives = 196/200 (98%)
Query: 1 MKRWLGVALGCSGLAIALACAGVLLAPADMAASSSSPPPARTVAALPAVDDRPPPLAPVR 60
MKRWLGVALGCSGLAIALACAGVLLAPADMAASSSSP PARTVAALPAVDDRPPP APVR
Sbjct: 1 MKRWLGVALGCSGLAIALACAGVLLAPADMAASSSSPSPARTVAALPAVDDRPPPPAPVR 60
Query: 61 SQAVAPAYEAEPPAAELDREQAIQFMQMLRDEGDPRSPPLGGLQPRQGATAQELADPKQY 120
SQA APAYEAEPP AELDREQAIQFMQMLRDEGDPRSPPLGGLQPRQGATAQELADPKQY
Sbjct: 61 SQAAAPAYEAEPPVAELDREQAIQFMQMLRDEGDPRSPPLGGLQPRQGATAQELADPKQY 120
Query: 121 QAFEERQTRELVQAYTSGVQQIPEIRARIEAAEQGGERSAEEIDEARAALGQLEMMRDKL 180
QAFEERQTRELVQAYTSGVQQIPEIRARIEAAEQGGERSAEEIDEARAALGQLEMMRDKL
Sbjct: 121 QAFEERQTRELVQAYTSGVQQIPEIRARIEAAEQGGERSAEEIDEARAALGQLEMMRDKL 180
Query: 181 QRESPQLLPGDSAPTSPAAP 200
QRESPQLLPGDSAPTSPAAP
Sbjct: 181 QRESPQLLPGDSAPTSPAAP 200
>emb|CAC49907.1| (AL603647) putative cell division protein FtsK like protein
[Sinorhizobium meliloti]
Length = 611
Score = 45.4 bits (106), Expect = 2e-04
Identities = 36/107 (33%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 23 VLLAPADMAASSSSPPPARTVAALPAVDDRPPPLAPVRSQAVAPAYEAEPPAAELDREQA 82
V P D+AA P A AALPA P + A+ PA E PA E +A
Sbjct: 15 VTAEPQDIAAE----PAAAEAAALPAHQFVETPAPALAEPAIVPASE---PAPEAPVTRA 67
Query: 83 IQFMQMLRDEGDPRSPPLGGLQPRQGATAQE------LADPKQYQAF 123
M + P PP+G ++P QG A E L +P Q Q F
Sbjct: 68 AITMPAVIQRSSPSLPPIGAIEPLQGGDAYEFPSKELLQEPPQGQGF 114
>emb|CAE41543.1| (BX640414) translation initiation factor IF-2 [Bordetella
pertussis]
Length = 997
Score = 45.1 bits (105), Expect = 3e-04
Identities = 43/143 (30%), Positives = 54/143 (37%), Gaps = 10/143 (6%)
Query: 14 LAIALACAGVLLAPADMAASSSSPPPARTVAALPAVDDRPPPLAPVRSQAVAPAYEAEPP 73
LA A A A A+ + ++P PA V A PAV+ P+ P A APA P
Sbjct: 102 LAAEQAAARAEEAAAEAVPAEAAPAPAEPVRAEPAVETAAKPVEP--PVAEAPAEPVAAP 159
Query: 74 AAELDREQAIQFMQMLRDEGDPRSPPLGGLQPRQGATAQELADPKQYQAFEERQTRELVQ 133
AAE EQ Q E P P +P Q A P Q A + +
Sbjct: 160 AAEPQPEQPAQ------AEAQPEPTPAAQAEPEPQPEPQPEAAPAQAVAEPVEPAKNVSV 213
Query: 134 AYTSGVQQIPE--IRARIEAAEQ 154
T Q PE + A+ E Q
Sbjct: 214 TETEAEQARPEPVVHAQTELTSQ 236
>emb|CAE33738.1| (BX640446) translation initiation factor IF-2 [Bordetella
bronchiseptica]
Length = 997
Score = 44.3 bits (103), Expect = 4e-04
Identities = 40/131 (30%), Positives = 49/131 (37%), Gaps = 8/131 (6%)
Query: 14 LAIALACAGVLLAPADMAASSSSPPPARTVAALPAVDDRPPPLAPVRSQAVAPAYEAEPP 73
LA A A A A+ + ++P PA V A PAV+ P+ P A APA P
Sbjct: 102 LAAEQAAARAEEAAAEAVPAEAAPAPAEPVRAEPAVETAAKPVEP--PVAEAPAEPVAAP 159
Query: 74 AAELDREQAIQFMQMLRDEGDPRSPPLGGLQPRQGATAQELADPKQYQAFEERQTRELVQ 133
AAE EQ Q E P P +P Q A P Q A + +
Sbjct: 160 AAEPQSEQPAQ------AEAQPEPTPAAQAEPEPQPEPQPEAAPAQAVAEPVEPAKNVSV 213
Query: 134 AYTSGVQQIPE 144
T Q PE
Sbjct: 214 TETEAEQARPE 224
>dbj|BAA10292.1| (D64001) general secretion pathway protein E [Synechocystis sp. PCC
6803]
Length = 672
Score = 43.5 bits (101), Expect = 8e-04
Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 5/154 (3%)
Query: 46 LPAVDDRPPPLAPVRSQAVAPAYEAEPPAAELDREQAIQFMQMLRDEGDPRSPPLGGLQP 105
L VD P +AP+ +Q +A P LD + +F+ + + EGDP S + + P
Sbjct: 82 LYGVDSVDPEVAPIATQQMAELIGRFFP---LDTCRRFKFLPLAQQEGDPPSVLVAMVDP 138
Query: 106 RQGATAQELADPKQYQAFEERQTRELVQAYTSGVQQIPEIRARIEAAEQ--GGERSAEEI 163
A EL + + FE R+ + ++Q IR EAA++ ER+ +++
Sbjct: 139 DNLAAQDELNRILRVKGFELRRLVVTQDDFNQLLEQYYAIREEWEAAQEKRDQERALDKL 198
Query: 164 DEARAALGQLEMMRDKLQRESPQLLPGDSAPTSP 197
++ +G ++M + + + L + A +P
Sbjct: 199 NDLTDIVGSIDMNLGEDKEDVDNALDSNDANQAP 232
>gb|AAF18101.1|AF204400_1 (AF204400) FrgA [Myxococcus xanthus]
Length = 883
Score = 40.0 bits (92), Expect = 0.008
Identities = 37/114 (32%), Positives = 46/114 (40%), Gaps = 16/114 (14%)
Query: 14 LAIALACAGVLLAPADMA-ASSSSPPPARTVAALPAVDDRPPP------LAPVR---SQA 63
LA+ + A AP A AS PPP A P + PPP AP+R QA
Sbjct: 135 LAVETSAAPQAAAPRPEAPASPQRPPPPPPEALTPGPEPLPPPGPPAFVRAPLRLNMPQA 194
Query: 64 VAPAYEAEPPAAELDREQAIQF------MQMLRDEGDPRSPPLGGLQPRQGATA 111
APA A+ P + + + F + P SPP L PR ATA
Sbjct: 195 EAPARPAQRPTPQAAQIPVLPFTPAPGTAPSSANTSTPASPPAATLPPRAPATA 248
>dbj|BAC46048.1| (AP005937) translation initiation factor IF-2 [Bradyrhizobium
japonicum USDA 110]
Length = 902
Score = 40.0 bits (92), Expect = 0.008
Identities = 43/156 (27%), Positives = 62/156 (39%), Gaps = 27/156 (17%)
Query: 47 PAVDDRPPPLAPVRSQAVAPAYEAEPPAAELDREQAIQFMQMLRDEGDPRSPPLGGLQPR 106
P V +P P AP AP+ A PPA + + + DE
Sbjct: 61 PEVTAKPAPAAP------APSRPAPPPAPPRNAGSGVVLRTLTEDE-------------- 100
Query: 107 QGATAQELADPKQYQAFEERQTRELVQAYTSGVQQIPEIRARIEAAE----QGGERSAEE 162
+ A A LAD K + E RQ E +A V++ E RA EAAE ER E
Sbjct: 101 RSARASALADAKLREVEERRQAEE--EAQRRAVREAAE-RAEREAAEARRKAEDERHRHE 157
Query: 163 IDEARAALGQLEMMRDKLQRESPQLLPGDSAPTSPA 198
+ R A + + + ++ + P +AP +PA
Sbjct: 158 DEAKRKAETEAKKRFGEGEQPASAARPATAAPAAPA 193
Database: gbbct
Posted date: Sep 29, 2003 6:22 PM
Number of letters in database: 35,829,034
Number of sequences in database: 119,422
Database: /blastdb/gbbct/gbbct2.aso
Posted date: Sep 29, 2003 6:23 PM
Number of letters in database: 46,604,961
Number of sequences in database: 153,703
Database: /blastdb/gbbct/gbbct3.aso
Posted date: Sep 29, 2003 6:24 PM
Number of letters in database: 37,964,456
Number of sequences in database: 126,043
Database: /blastdb/gbbct/gbbct4.aso
Posted date: Sep 29, 2003 6:29 PM
Number of letters in database: 44,801,584
Number of sequences in database: 150,186
Database: /blastdb/gbbct/gbbct5.aso
Posted date: Sep 29, 2003 6:29 PM
Number of letters in database: 3,182,186
Number of sequences in database: 10,611
Lambda K H
0.312 0.129 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,947,059
Number of Sequences: 559965
Number of extensions: 2558888
Number of successful extensions: 13702
Number of sequences better than 1.0e-02: 7
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 13685
Number of HSP's gapped (non-prelim): 16
length of query: 200
length of database: 168,382,221
effective HSP length: 111
effective length of query: 89
effective length of database: 106,226,106
effective search space: 9454123434
effective search space used: 9454123434
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 92 (40.0 bits)