Score E
Sequences producing significant alignments: (bits) Value
gb|AAG03391.1|AE004440_1 (AE004440) chromosomal replication... 1015 0.0
gb|AAG28797.1|AF229442_1 (AF229442) DnaA [Pseudomonas aerug... 1015 0.0
gb|AAO53558.1| (AE016856) chromosomal replication initiator... 840 0.0
gb|AAN65644.1|AE016191_1 (AE016774) chromosomal replication... 827 0.0
emb|CAA32893.1| (X14791) unnamed protein product [Pseudomon... 827 0.0
gb|AAN53095.1|AE015452_8 (AE015452) chromosomal replication... 615 e-175
gb|AAP18992.1| (AE016991) replication initiation protein Dn... 614 e-175
gb|AAG58899.1|AE005601_5 (AE005601) DNA biosynthesis; initi... 614 e-175
dbj|BAB38060.1| (AP002566) replication initiation protein D... 614 e-175
gb|AAC76725.1| (AE000447) DNA biosynthesis; initiation of c... 614 e-175
gb|AAB59149.1| (J01602) DnaA protein (gtg start codon) [Esc... 614 e-175
gb|AAF93190.1| (AE004093) chromosomal DNA replication initi... 610 e-174
emb|CAC93547.1| (AJ414160) chromosomal replication initiato... 609 e-173
gb|AAA83958.1| (M58352) dnaA gene product [Proteus mirabilis] 609 e-173
gb|AAM87655.1|AE014012_12 (AE014012) DNA biosynthesis prote... 608 e-173
gb|AAA78257.1| (L47617) DnaA [Vibrio harveyi] 607 e-173
dbj|BAC58274.1| (AP005073) chromosomal DNA replication init... 607 e-173
gb|AAA02924.1|AAA02924 (M17353) DnaA [Serratia marcescens] 607 e-173
gb|AAL22697.1| (AE008879) DNA replication initiator protein... 607 e-173
gb|AAO71177.1| (AE016846) chromosomal replication initiator... 607 e-173
emb|CAD03157.1| (AL627280) chromosomal replication initiato... 607 e-173
gb|AAA02815.1| (M17352) dnaA protein [Salmonella typhimurium] 605 e-172
gb|AAA62053.1| (L10328) dnaA (CG Site No. 851) [Escherichia... 601 e-171
gb|AAO09488.1|AE016800_93 (AE016800) DNA replication initia... 590 e-168
gb|AAO89571.1| (AE016960) chromosomal replication initiator... 585 e-166
gb|AAM67584.1| (AE014077) chromosomal replication initiator... 506 e-142
gb|AAC38106.1| (AF008210) DNA biosynthesis initiating prote... 506 e-142
gb|AAA73149.1| (M80817) dnaA [Buchnera aphidicola] 506 e-142
gb|AAK03245.1| (AE006156) DnaA [Pasteurella multocida] 500 e-141
dbj|BAB12740.1| (AP001118) chromosomal replication initiato... 478 e-134
emb|CAD16939.1| (AL646075) PROBABLE CHROMOSOMAL REPLICATION... 474 e-133
gb|AAC22655.1| (U32780) chromosomal replication initiator p... 470 e-131
gb|AAM34893.1| (AE011623) chromosomal replication initiator... 464 e-130
gb|AAM39320.1| (AE012093) chromosomal replication initiator... 460 e-129
gb|AAP95742.1| (AE017153) chromosomal replication initiator... 454 e-127
gb|AAL30089.1| (AY057934) chromosomal replication initiator... 454 e-127
emb|CAE35353.1| (BX640452) chromosomal replication initiato... 447 e-125
emb|CAE39680.1| (BX640436) chromosomal replication initiato... 441 e-123
emb|CAE44820.1| (BX640412) chromosomal replication initiato... 441 e-123
emb|CAD83912.1| (BX321856) dnaA; chromosomal replication in... 432 e-120
gb|AAO27909.1| (AE012553) chromosomal replication initiator... 407 e-112
gb|AAF82814.1|AE003855_1 (AE003855) chromosomal replication... 406 e-112
gb|AAN45205.1|AE015383_5 (AE015383) DNA biosynthesis; initi... 405 e-112
emb|CAB83845.1| (AL162753) putative chromosomal replication... 404 e-112
gb|AAF42233.1| (AE002540) chromosomal replication initiator... 403 e-111
gb|AAP07111.1| (AE016998) Chromosomal replication initiator... 359 2e-98
dbj|BAB79707.1| (AP003185) chromosomal replication initiato... 359 2e-98
gb|AAO03598.1|AE016744_1 (AE016744) chromosomal replication... 355 4e-97
gb|AAO26756.1| (AE014016) chromosomal replication initiator... 354 6e-97
gb|AAP24059.1| (AE017024) chromosomal replication initiator... 354 8e-97
dbj|BAB03720.1| (AP001507) initiation of chromosome replica... 352 2e-96
dbj|BAA82685.1| (AB013492) 78%-identity [Bacillus halodurans] 352 2e-96
gb|AAN14420.1|AF319579_1 (AF319579) DnaA [Bacillus weihenst... 350 2e-95
dbj|BAB41217.1| (AP003129) chromosomal replication initiato... 350 2e-95
dbj|BAB93866.1| (AP004822) chromosomal replication initiato... 350 2e-95
dbj|BAA13755.1| (D89066) DnaA [Staphylococcus aureus] 350 2e-95
dbj|BAB56163.1| (AP003358) chromosomal replication initiato... 350 2e-95
emb|CAB11777.1| (Z99104) dnaA [Bacillus subtilis subsp. sub... 347 8e-95
dbj|BAA05237.1| (D26185) initiation protein of replicaton [... 347 8e-95
emb|CAA26217.1| (X02369) pot. ORF 446 (aa 1-446) [Bacillus ... 347 8e-95
dbj|BAC11957.1| (AP004593) chromosomal replication initiati... 347 1e-94
gb|AAK77988.1|AE007513_1 (AE007513) DNA replication initiat... 346 2e-94
gb|AAD42393.1|AF157493_1 (AF157493) chromosomal replication... 344 7e-94
emb|CAC95234.1| (AL596163) Chromosomal replication initiati... 344 9e-94
emb|CAC98216.1| (AL591973) Chromosomal replication initiati... 342 3e-93
gb|AAO34747.1| (AE015936) chromosomal replication initiator... 339 2e-92
emb|CAD62703.1| (AL935252) chromosomal replication initiati... 337 8e-92
gb|AAL03454.1| (AE008645) chromosomal replication initiator... 335 5e-91
emb|CAA15045.1| (AJ235272) CHROMOSOMAL REPLICATION INITIATO... 334 7e-91
gb|AAA99160.1| (U55213) DnaA protein [Rickettsia prowazekii] 334 7e-91
gb|AAO79886.1| (AE016947) chromosomal replication initiator... 332 4e-90
emb|CAB40110.1| (AJ133785) initiator protein DnaA [Thermus ... 328 4e-89
gb|AAM23318.1| (AE012974) ATPase involved in DNA replicatio... 328 5e-89
gb|AAK04099.1|AE006239_1 (AE006239) replication initiation ... 317 1e-85
emb|CAB52256.1| (AJ012073) dnaA protein [Wolbachia sp. wRi] 315 3e-85
gb|AAM71250.1| (AE012780) chromosomal replication initiator... 311 8e-84
gb|AAF09596.1|AE001864_2 (AE001864) chromosomal replication... 311 8e-84
gb|AAA25315.1| (M34006) DNA biosynthesis initiation protein... 308 4e-83
dbj|BAA17801.1| (D90909) chromosomal replication initiator ... 303 2e-81
dbj|BAC16811.1| (AP005214) putative chromosomal replication... 301 8e-81
emb|CAE21362.1| (BX572098) chromosomal replication initiato... 299 3e-80
emb|CAD92863.1| (BX248334) CHROMOSOMAL REPLICATION INITIATO... 298 4e-80
emb|CAA16238.1| (AL021427) dnaA [Mycobacterium tuberculosis... 298 5e-80
emb|CAA63257.1| (X92504) dnaA [Mycobacterium tuberculosis] 298 5e-80
gb|AAK44224.1| (AE006915) chromosomal replication initiator... 298 5e-80
gb|AAF33692.1| (AF222789) putative dnaA [Mycobacterium aviu... 297 9e-80
dbj|BAC08155.1| (AP005371) chromosomal replication initiato... 297 9e-80
gb|AAN24462.1|AE014685_9 (AE014685) chromosomal replication... 297 1e-79
gb|AAD08806.1| (AF071023) DNA replication initiator protein... 297 1e-79
gb|AAB38528.2| (U38891) chromosomal replication initiator p... 296 2e-79
dbj|BAC72028.1| (AP005038) putative replication initiator p... 295 4e-79
dbj|BAB97394.1| (AP005274) ATPase involved in DNA replicati... 295 4e-79
emb|CAD55464.1| (AL939118) chromosomal replication initiato... 294 1e-78
gb|AAA26734.1| (AF187159) DnaA [Streptomyces coelicolor A3(2)] 294 1e-78
gb|AAP99612.1| (AE017162) ATPase [Prochlorococcus marinus s... 292 3e-78
gb|AAP05115.1| (AE016995) chromosomal replication initiator... 292 3e-78
gb|AAD08807.1| (AF071024) DNA replication initiator protein... 292 4e-78
emb|CAE08051.1| (BX569693) chromosomal replication initiato... 291 7e-78
gb|AAA85913.1| (L36958) putative [Synechocystis sp.] 291 9e-78
gb|AAC15822.1| (U44977) DnaA [Prochlorococcus marinus] 290 1e-77
>gb|AAG03391.1|AE004440_1 (AE004440) chromosomal replication initiator protein DnaA
[Pseudomonas aeruginosa PAO1]
Length = 514
Score = 1015 bits (2625), Expect = 0.0
Identities = 514/514 (100%), Positives = 514/514 (100%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL
Sbjct: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
Query: 61 ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVV 120
ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVV
Sbjct: 61 ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVV 120
Query: 121 PREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLN 180
PREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLN
Sbjct: 121 PREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLN 180
Query: 181 RTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 240
RTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN
Sbjct: 181 RTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 240
Query: 241 PNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHT 300
PNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHT
Sbjct: 241 PNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHT 300
Query: 301 FNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQA 360
FNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQA
Sbjct: 301 FNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQA 360
Query: 361 KIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKL 420
KIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKL
Sbjct: 361 KIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKL 420
Query: 421 VSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRD 480
VSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRD
Sbjct: 421 VSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRD 480
Query: 481 HTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
HTTVLHACRKIAQLRESDADIREDYKNLLRTLTT
Sbjct: 481 HTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
>gb|AAG28797.1|AF229442_1 (AF229442) DnaA [Pseudomonas aeruginosa]
Length = 514
Score = 1015 bits (2625), Expect = 0.0
Identities = 514/514 (100%), Positives = 514/514 (100%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL
Sbjct: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
Query: 61 ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVV 120
ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVV
Sbjct: 61 ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVV 120
Query: 121 PREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLN 180
PREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLN
Sbjct: 121 PREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLN 180
Query: 181 RTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 240
RTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN
Sbjct: 181 RTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 240
Query: 241 PNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHT 300
PNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHT
Sbjct: 241 PNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHT 300
Query: 301 FNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQA 360
FNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQA
Sbjct: 301 FNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQA 360
Query: 361 KIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKL 420
KIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKL
Sbjct: 361 KIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKL 420
Query: 421 VSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRD 480
VSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRD
Sbjct: 421 VSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRD 480
Query: 481 HTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
HTTVLHACRKIAQLRESDADIREDYKNLLRTLTT
Sbjct: 481 HTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
>gb|AAO53558.1| (AE016856) chromosomal replication initiator protein DnaA
[Pseudomonas syringae pv. tomato str. DC3000]
Length = 511
Score = 840 bits (2169), Expect = 0.0
Identities = 442/519 (85%), Positives = 461/519 (88%), Gaps = 13/519 (2%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MSVELWQQCV+LLRDELP+QQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL
Sbjct: 1 MSVELWQQCVELLRDELPAQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
Query: 61 ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVV 120
ELLGERG+G PALSLLIGSKRS PRAA P+ AP A VS+
Sbjct: 61 ELLGERGQGMAPALSLLIGSKRSSAPRAA--PN----APLAAAASQALSGNSVSSVSASA 114
Query: 121 PREELP-PVTTAP----SVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKH 175
P +P P+ AP +V++ EP S DP+A A + APA +R VQVEGALKH
Sbjct: 115 PAMAVPAPMVAAPVPVHNVATHD-EPSRDSFDPMAGAS-SQQAPARAEQRTVQVEGALKH 172
Query: 176 TSYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNH 235
TSYLNRTFTFENFVEGKSNQLARAAAWQVADN KHGYNPLFLYGGVGLGKTHLMHAVGNH
Sbjct: 173 TSYLNRTFTFENFVEGKSNQLARAAAWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNH 232
Query: 236 LLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQE 295
LLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQE
Sbjct: 233 LLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQE 292
Query: 296 EFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMK 355
EFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMK
Sbjct: 293 EFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMK 352
Query: 356 KAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLA 415
KA+QAK++LPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGR ITIELIRESLKDLLA
Sbjct: 353 KADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLA 412
Query: 416 LQDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVA 475
LQDKLVS+DNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIG
Sbjct: 413 LQDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDV 472
Query: 476 FGGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
FGGRDHTTVLHACRKI +L+ESDADIREDYKNLLRTLTT
Sbjct: 473 FGGRDHTTVLHACRKINELKESDADIREDYKNLLRTLTT 511
>gb|AAN65644.1|AE016191_1 (AE016774) chromosomal replication initiator protein DnaA
[Pseudomonas putida KT2440]
Length = 506
Score = 827 bits (2136), Expect = 0.0
Identities = 436/518 (84%), Positives = 453/518 (87%), Gaps = 16/518 (3%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MSVELWQQCV+LLRDELP+QQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL
Sbjct: 1 MSVELWQQCVELLRDELPAQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
Query: 61 ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVV 120
ELLGE G G PALSLLIGS+RS PRAA P PV+ A + A
Sbjct: 61 ELLGENGSGIAPALSLLIGSRRSSAPRAA---------PNAPVSAAVAASLAQTQAHKTA 111
Query: 121 PREELPPVTTAPSVSSDPYEPEEPSIDPL-AAAMPAGAAPAV---RTERNVQVEGALKHT 176
P + PV A +++P E S D A A PA A P+ +R VQVEGALKHT
Sbjct: 112 PAAAVEPVAVA---AAEPVLVETSSRDSFDAMAEPAAAPPSGGGRAEQRTVQVEGALKHT 168
Query: 177 SYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHL 236
SYLNRTFTF+ FVEGKSNQLARAAAWQVADN KHGYNPLFLYGGVGLGKTHLMHAVGNHL
Sbjct: 169 SYLNRTFTFDTFVEGKSNQLARAAAWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHL 228
Query: 237 LKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEE 296
LKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEE
Sbjct: 229 LKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEE 288
Query: 297 FFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKK 356
FFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKK
Sbjct: 289 FFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKK 348
Query: 357 AEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLAL 416
A+QAK+ELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGR ITIELIRESLKDLLAL
Sbjct: 349 ADQAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL 408
Query: 417 QDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAF 476
QDKLVS+DNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIG F
Sbjct: 409 QDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDMF 468
Query: 477 GGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
GGRDHTTVLHACRKI +L+ESDADIREDYKNLLRTLTT
Sbjct: 469 GGRDHTTVLHACRKINELKESDADIREDYKNLLRTLTT 506
>emb|CAA32893.1| (X14791) unnamed protein product [Pseudomonas putida]
Length = 506
Score = 827 bits (2136), Expect = 0.0
Identities = 436/518 (84%), Positives = 453/518 (87%), Gaps = 16/518 (3%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MSVELWQQCV+LLRDELP+QQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL
Sbjct: 1 MSVELWQQCVELLRDELPAQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
Query: 61 ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVV 120
ELLGE G G PALSLLIGS+RS PRAA P PV+ A + A
Sbjct: 61 ELLGENGSGIAPALSLLIGSRRSSAPRAA---------PNAPVSAAVAASLAQTQAHKTA 111
Query: 121 PREELPPVTTAPSVSSDPYEPEEPSIDPL-AAAMPAGAAPAV---RTERNVQVEGALKHT 176
P + PV A +++P E S D A A PA A P+ +R VQVEGALKHT
Sbjct: 112 PAAAVEPVAVA---AAEPVLVETSSRDSFDAMAEPAAAPPSGGGRAEQRTVQVEGALKHT 168
Query: 177 SYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHL 236
SYLNRTFTF+ FVEGKSNQLARAAAWQVADN KHGYNPLFLYGGVGLGKTHLMHAVGNHL
Sbjct: 169 SYLNRTFTFDTFVEGKSNQLARAAAWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHL 228
Query: 237 LKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEE 296
LKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEE
Sbjct: 229 LKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEE 288
Query: 297 FFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKK 356
FFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKK
Sbjct: 289 FFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKK 348
Query: 357 AEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLAL 416
A+QAK+ELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGR ITIELIRESLKDLLAL
Sbjct: 349 ADQAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL 408
Query: 417 QDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAF 476
QDKLVS+DNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIG F
Sbjct: 409 QDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDMF 468
Query: 477 GGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
GGRDHTTVLHACRKI +L+ESDADIREDYKNLLRTLTT
Sbjct: 469 GGRDHTTVLHACRKINELKESDADIREDYKNLLRTLTT 506
>gb|AAN53095.1|AE015452_8 (AE015452) chromosomal replication initiator protein DnaA
[Shewanella oneidensis MR-1]
Length = 460
Score = 615 bits (1585), Expect = e-175
Identities = 323/514 (62%), Positives = 380/514 (73%), Gaps = 54/514 (10%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
M+V LWQQC+ L+DEL +QQF+ WIRPLQ E +GD L +YAPNRFVLDWV +KY+ +
Sbjct: 1 MAVSLWQQCIGRLQDELSAQQFSMWIRPLQAEMDGDTLVLYAPNRFVLDWVRDKYINIIN 60
Query: 61 ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVV 120
+ E+ P L IGS+ P P PAPV V
Sbjct: 61 QFFTEQMGNDAPKLRFDIGSR------------------PSAKKPEPAPVAAV------- 95
Query: 121 PREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLN 180
+P T SV + + EP + H S +N
Sbjct: 96 ---RVPSPQTKASVGT-AFNTTEPVANT-------------------------NHRSNIN 126
Query: 181 RTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 240
T+ F+NFVEGKSNQL +AAA QVA+N YNPLFLYGG GLGKTHL+HAVGN ++K N
Sbjct: 127 PTYQFDNFVEGKSNQLGKAAALQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIKNN 186
Query: 241 PNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHT 300
PNAKVVY+HSERFV DMVKALQ NAI EFKR+YRSVDAL IDDIQFFA K+RSQEEFFHT
Sbjct: 187 PNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFFHT 246
Query: 301 FNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQA 360
FNALLEG Q+ILTSDRYPKEI+G+E+RLKSRFGWGLTVA+EPPELETRVAILM+KA+++
Sbjct: 247 FNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQES 306
Query: 361 KIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKL 420
I LP + AFFIA+R+RSNVRELEGAL RVIA+++F GRPITI+ +RE+L+DLLALQ+KL
Sbjct: 307 GINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKL 366
Query: 421 VSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRD 480
V+IDNIQ+TVAEYYKIK++D+LSKRRSRSVARPRQVAMALSKELTN SLPEIG AFGGRD
Sbjct: 367 VTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALSKELTNQSLPEIGDAFGGRD 426
Query: 481 HTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
HTTVLHACRKIAQLRE DI+EDY NL+RTL++
Sbjct: 427 HTTVLHACRKIAQLREESHDIKEDYANLIRTLSS 460
>gb|AAP18992.1| (AE016991) replication initiation protein DnaA [Shigella flexneri
2a str. 2457T]
Length = 467
Score = 614 bits (1584), Expect = e-175
Identities = 330/515 (64%), Positives = 386/515 (74%), Gaps = 49/515 (9%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MS+ LWQQC+ L+DELP+ +F+ WIRPLQ E + L +YAPNRFVLDWV +KYL +
Sbjct: 1 MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNIN 60
Query: 61 ELLGERGEGQLPALSLLIGSKR-SRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVV 119
LL P L +G+K ++TP+AA+ ++VA P VA
Sbjct: 61 GLLTSFCGADAPQLRFEVGTKPVTQTPQAAVT---SNVAAPAQVA--------------- 102
Query: 120 VPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYL 179
+ P APS S +PA A P R+ NV KHT
Sbjct: 103 ----QTQPQRAAPSTRSGWDN------------VPAPAEPTYRSNVNV------KHT--- 137
Query: 180 NRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKK 239
F+NFVEGKSNQLARAAA QVADN YNPLFLYGG GLGKTHL+HAVGN ++ +
Sbjct: 138 -----FDNFVEGKSNQLARAAACQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMAR 192
Query: 240 NPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFH 299
PNAKVVY+HSERFV DMVKALQ NAI EFKR+YRSVDALLIDDIQFFA KERSQEEFFH
Sbjct: 193 KPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFH 252
Query: 300 TFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQ 359
TFNALLEG QQ+ILTSDRYPKEI G+E+RLKSRFGWGLTVA+EPPELETRVAILMKKA++
Sbjct: 253 TFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADE 312
Query: 360 AKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDK 419
I LP + AFFIA+R+RSNVRELEGAL RVIA+++F GR ITI+ +RE+L+DLLALQ+K
Sbjct: 313 NDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEK 372
Query: 420 LVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGR 479
LV+IDNIQ+TVAEYYKIK++DLLSKRRSRSVARPRQ+AMAL+KELTNHSLPEIG AFGGR
Sbjct: 373 LVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGR 432
Query: 480 DHTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
DHTTVLHACRKI QLRE DI+ED+ NL+RTL++
Sbjct: 433 DHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS 467
>gb|AAG58899.1|AE005601_5 (AE005601) DNA biosynthesis; initiation of chromosome replication;
can be transcription regulator [Escherichia coli O157:H7
EDL933]
Length = 467
Score = 614 bits (1584), Expect = e-175
Identities = 331/515 (64%), Positives = 388/515 (75%), Gaps = 49/515 (9%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MS+ LWQQC+ L+DELP+ +F+ WIRPLQ E + L +YAPNRFVLDWV +KYL +
Sbjct: 1 MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNIN 60
Query: 61 ELLGERGEGQLPALSLLIGSKR-SRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVV 119
LL P L +G+K ++TP+AA+ ++VA P VA QP AAP
Sbjct: 61 GLLTSFCGADAPQLRFEVGTKSVTQTPQAAVT---SNVAAPAQVAQ----TQPQRAAP-- 111
Query: 120 VPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYL 179
+T + +PA A P R+ NV KHT
Sbjct: 112 ---------STRSGWDN----------------VPAPAEPTYRSNVNV------KHT--- 137
Query: 180 NRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKK 239
F+NFVEGKSNQLARAAA QVADN YNPLFLYGG GLGKTHL+HAVGN ++ +
Sbjct: 138 -----FDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMAR 192
Query: 240 NPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFH 299
PNAKVVY+HSERFV DMVKALQ NAI EFKR+YRSVDALLIDDIQFFA KERSQEEFFH
Sbjct: 193 KPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFH 252
Query: 300 TFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQ 359
TFNALLEG QQ+ILTSDRYPKEI G+E+RLKSRFGWGLTVA+EPPELETRVAILMKKA++
Sbjct: 253 TFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADE 312
Query: 360 AKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDK 419
I LP + AFFIA+R+RSNVRELEGAL RVIA+++F GR ITI+ +RE+L+DLLALQ+K
Sbjct: 313 NDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEK 372
Query: 420 LVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGR 479
LV+IDNIQ+TVAEYYKIK++DLLSKRRSRSVARPRQ+AMAL+KELTNHSLPEIG AFGGR
Sbjct: 373 LVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGR 432
Query: 480 DHTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
DHTTVLHACRKI QLRE DI+ED+ NL+RTL++
Sbjct: 433 DHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS 467
>dbj|BAB38060.1| (AP002566) replication initiation protein DnaA [Escherichia coli
O157:H7]
Length = 467
Score = 614 bits (1584), Expect = e-175
Identities = 331/515 (64%), Positives = 388/515 (75%), Gaps = 49/515 (9%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MS+ LWQQC+ L+DELP+ +F+ WIRPLQ E + L +YAPNRFVLDWV +KYL +
Sbjct: 1 MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNIN 60
Query: 61 ELLGERGEGQLPALSLLIGSKR-SRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVV 119
LL P L +G+K ++TP+AA+ ++VA P VA QP AAP
Sbjct: 61 GLLTSFCGADAPQLRFEVGTKSVTQTPQAAVT---SNVAAPAQVAQ----TQPQRAAP-- 111
Query: 120 VPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYL 179
+T + +PA A P R+ NV KHT
Sbjct: 112 ---------STRSGWDN----------------VPAPAEPTYRSNVNV------KHT--- 137
Query: 180 NRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKK 239
F+NFVEGKSNQLARAAA QVADN YNPLFLYGG GLGKTHL+HAVGN ++ +
Sbjct: 138 -----FDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMAR 192
Query: 240 NPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFH 299
PNAKVVY+HSERFV DMVKALQ NAI EFKR+YRSVDALLIDDIQFFA KERSQEEFFH
Sbjct: 193 KPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFH 252
Query: 300 TFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQ 359
TFNALLEG QQ+ILTSDRYPKEI G+E+RLKSRFGWGLTVA+EPPELETRVAILMKKA++
Sbjct: 253 TFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADE 312
Query: 360 AKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDK 419
I LP + AFFIA+R+RSNVRELEGAL RVIA+++F GR ITI+ +RE+L+DLLALQ+K
Sbjct: 313 NDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEK 372
Query: 420 LVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGR 479
LV+IDNIQ+TVAEYYKIK++DLLSKRRSRSVARPRQ+AMAL+KELTNHSLPEIG AFGGR
Sbjct: 373 LVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGR 432
Query: 480 DHTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
DHTTVLHACRKI QLRE DI+ED+ NL+RTL++
Sbjct: 433 DHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS 467
>gb|AAC76725.1| (AE000447) DNA biosynthesis; initiation of chromosome replication;
can be transcription regulator [Escherichia coli K12]
Length = 467
Score = 614 bits (1583), Expect = e-175
Identities = 330/515 (64%), Positives = 386/515 (74%), Gaps = 49/515 (9%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MS+ LWQQC+ L+DELP+ +F+ WIRPLQ E + L +YAPNRFVLDWV +KYL +
Sbjct: 1 MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNIN 60
Query: 61 ELLGERGEGQLPALSLLIGSKR-SRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVV 119
LL P L +G+K ++TP+AA+ ++VA P VA
Sbjct: 61 GLLTSFCGADAPQLRFEVGTKPVTQTPQAAVT---SNVAAPAQVA--------------- 102
Query: 120 VPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYL 179
+ P APS S +PA A P R+ NV KHT
Sbjct: 103 ----QTQPQRAAPSTRSGWDN------------VPAPAEPTYRSNVNV------KHT--- 137
Query: 180 NRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKK 239
F+NFVEGKSNQLARAAA QVADN YNPLFLYGG GLGKTHL+HAVGN ++ +
Sbjct: 138 -----FDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMAR 192
Query: 240 NPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFH 299
PNAKVVY+HSERFV DMVKALQ NAI EFKR+YRSVDALLIDDIQFFA KERSQEEFFH
Sbjct: 193 KPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFH 252
Query: 300 TFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQ 359
TFNALLEG QQ+ILTSDRYPKEI G+E+RLKSRFGWGLTVA+EPPELETRVAILMKKA++
Sbjct: 253 TFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADE 312
Query: 360 AKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDK 419
I LP + AFFIA+R+RSNVRELEGAL RVIA+++F GR ITI+ +RE+L+DLLALQ+K
Sbjct: 313 NDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEK 372
Query: 420 LVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGR 479
LV+IDNIQ+TVAEYYKIK++DLLSKRRSRSVARPRQ+AMAL+KELTNHSLPEIG AFGGR
Sbjct: 373 LVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGR 432
Query: 480 DHTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
DHTTVLHACRKI QLRE DI+ED+ NL+RTL++
Sbjct: 433 DHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS 467
>gb|AAB59149.1| (J01602) DnaA protein (gtg start codon) [Escherichia coli]
Length = 467
Score = 614 bits (1583), Expect = e-175
Identities = 330/515 (64%), Positives = 386/515 (74%), Gaps = 49/515 (9%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MS+ LWQQC+ L+DELP+ +F+ WIRPLQ E + L +YAPNRFVLDWV +KYL +
Sbjct: 1 MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNIN 60
Query: 61 ELLGERGEGQLPALSLLIGSKR-SRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVV 119
LL P L +G+K ++TP+AA+ ++VA P VA
Sbjct: 61 GLLTSFCGADAPQLRFEVGTKPVTQTPQAAVT---SNVAAPAQVA--------------- 102
Query: 120 VPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYL 179
+ P APS S +PA A P R+ NV KHT
Sbjct: 103 ----QTQPQRAAPSTRSGWDN------------VPAPAEPTYRSNVNV------KHT--- 137
Query: 180 NRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKK 239
F+NFVEGKSNQLARAAA QVADN YNPLFLYGG GLGKTHL+HAVGN ++ +
Sbjct: 138 -----FDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMAR 192
Query: 240 NPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFH 299
PNAKVVY+HSERFV DMVKALQ NAI EFKR+YRSVDALLIDDIQFFA KERSQEEFFH
Sbjct: 193 KPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFH 252
Query: 300 TFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQ 359
TFNALLEG QQ+ILTSDRYPKEI G+E+RLKSRFGWGLTVA+EPPELETRVAILMKKA++
Sbjct: 253 TFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADE 312
Query: 360 AKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDK 419
I LP + AFFIA+R+RSNVRELEGAL RVIA+++F GR ITI+ +RE+L+DLLALQ+K
Sbjct: 313 NDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEK 372
Query: 420 LVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGR 479
LV+IDNIQ+TVAEYYKIK++DLLSKRRSRSVARPRQ+AMAL+KELTNHSLPEIG AFGGR
Sbjct: 373 LVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGR 432
Query: 480 DHTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
DHTTVLHACRKI QLRE DI+ED+ NL+RTL++
Sbjct: 433 DHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS 467
>gb|AAF93190.1| (AE004093) chromosomal DNA replication initiator DnaA [Vibrio
cholerae]
Length = 472
Score = 610 bits (1574), Expect = e-174
Identities = 322/514 (62%), Positives = 378/514 (73%), Gaps = 47/514 (9%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
+S LW QC+ L++ELP+ +F+ W+RPLQ E + L ++APNRFVLDWV +KYL +
Sbjct: 6 VSSSLWLQCLQRLQEELPAAEFSMWVRPLQAELNDNTLTLFAPNRFVLDWVRDKYLNNIN 65
Query: 61 ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVV 120
LL E +P L +GS+ P VAP PAPV+
Sbjct: 66 RLLMEFSGNDVPNLRFEVGSR-------------------PVVAPKPAPVR--------- 97
Query: 121 PREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLN 180
TA V+++ P A A P +T + + H S +N
Sbjct: 98 ---------TAADVAAESSAP----------AQLAQRKPIHKTWDDDSAAADITHRSNVN 138
Query: 181 RTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 240
F NFVEGKSNQL AAA QV+DN YNPLFLYGG GLGKTHL+HAVGN ++ N
Sbjct: 139 PKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVDNN 198
Query: 241 PNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHT 300
PNAKVVY+HSERFV DMVKALQ NAI EFKR+YRSVDALLIDDIQFFA KERSQEEFFHT
Sbjct: 199 PNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHT 258
Query: 301 FNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQA 360
FNALLEG QQ+ILTSDRYPKEI G+E+RLKSRFGWGLTVA+EPPELETRVAILMKKAE
Sbjct: 259 FNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAEDH 318
Query: 361 KIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKL 420
+I LP + AFFIA+R+RSNVRELEGAL RVIA+++F GRPITI+ +RE+L+DLLALQ+KL
Sbjct: 319 QIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKL 378
Query: 421 VSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRD 480
V+IDNIQ+TVAEYYKIK++DLLSKRRSRSVARPRQ+AMAL+KELTNHSLPEIG AFGGRD
Sbjct: 379 VTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRD 438
Query: 481 HTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
HTTVLHACRKI QLRE DI+EDY NL+RTL++
Sbjct: 439 HTTVLHACRKIEQLREESHDIKEDYSNLIRTLSS 472
>emb|CAC93547.1| (AJ414160) chromosomal replication initiator protein [Yersinia
pestis CO92]
Length = 462
Score = 609 bits (1571), Expect = e-173
Identities = 325/515 (63%), Positives = 384/515 (74%), Gaps = 54/515 (10%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MS+ LWQQC+ L+DELP+ +F+ WIRPLQ E + L +YAPNRFVLDWV +KYL +
Sbjct: 1 MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNIN 60
Query: 61 ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVS-AAPVV 119
LL + ++P L +GSK + ++ H P A APV PV+ +AP+
Sbjct: 61 GLLNDFCGTEVPLLRFEVGSKPA---------ARAH--NNPVTASVSAPVAPVTRSAPM- 108
Query: 120 VPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYL 179
PS + P +PE L + S +
Sbjct: 109 -----------RPSWDNSPAQPE------------------------------LSYRSNV 127
Query: 180 NRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKK 239
N TF+NFVEGKSNQLARAAA QVADN YNPLFLYGG GLGKTHL+HAVGN ++ +
Sbjct: 128 NPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMAR 187
Query: 240 NPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFH 299
NAKVVY+HSERFV DMVKALQ NAI EFKR+YRSVDALLIDDIQFFA KERSQEEFFH
Sbjct: 188 KANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFH 247
Query: 300 TFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQ 359
TFNALLEG QQ+ILTSDRYPKEI G+E+RLKSRFGWGLTVA+EPPELETRVAILMKKA++
Sbjct: 248 TFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADE 307
Query: 360 AKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDK 419
I LP + AFFIA+R+RSNVRELEGAL RVIA+++F GR ITI+ +RE+L+DLLALQ+K
Sbjct: 308 NDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEK 367
Query: 420 LVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGR 479
LV+IDNIQ+TVAEYYKIK++DLLSKRRSRSVARPRQ+AMAL+KELTNHSLPEIG AFGGR
Sbjct: 368 LVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGR 427
Query: 480 DHTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
DHTTVLHACRKI QLRE DI+ED+ NL+RTL++
Sbjct: 428 DHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS 462
>gb|AAA83958.1| (M58352) dnaA gene product [Proteus mirabilis]
Length = 466
Score = 609 bits (1571), Expect = e-173
Identities = 323/516 (62%), Positives = 382/516 (74%), Gaps = 52/516 (10%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MS+ LWQ C+ L+DELP+ +F+ WIRPLQ E + L +YAPNRFVLDWV EKY+ +
Sbjct: 1 MSLSLWQHCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVREKYINNIN 60
Query: 61 ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVV 120
LL + +P+L +G+K PVSA
Sbjct: 61 ALLVDFCGSDVPSLRFEVGNK------------------------------PVSARTT-- 88
Query: 121 PREELPPVTTAPSVSSDPY--EPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSY 178
E +P T P+V+S P +P PS D P P + NV
Sbjct: 89 --ESVPKTVTHPAVNSTPTNSQPVRPSWDN----QPQSQLPELNYRSNV----------- 131
Query: 179 LNRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLK 238
N F+NFVEGKSNQLARAAA QVADN YNPLFLYGG GLGKTHL+HAVGN +++
Sbjct: 132 -NPKHKFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNSIME 190
Query: 239 KNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFF 298
+ NAKVVY+HSERFV DMVKALQ NAI +FKR+YRSVDALLIDDIQFFA KERSQEEFF
Sbjct: 191 RKANAKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVDALLIDDIQFFANKERSQEEFF 250
Query: 299 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAE 358
HTFNALLEG QQ+ILTSDRYPKEI G+E+RLKSRFGWGLTVA+EPPELETRVAILMKKA+
Sbjct: 251 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 310
Query: 359 QAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQD 418
+ +I+LP + AFFIA+R+RSNVRELEGAL RVIA+++F GR ITI+ +RE+L+DLLALQ+
Sbjct: 311 ENQIQLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE 370
Query: 419 KLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGG 478
KLV+IDNIQ+TVAEYYKIK++DLLSKRRSRSVARPRQ+AMAL+KELTNHSLPEIG AFGG
Sbjct: 371 KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGG 430
Query: 479 RDHTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
RDHTTVLHACRKI QLRE DI+ED+ NL+RTL++
Sbjct: 431 RDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS 466
>gb|AAM87655.1|AE014012_12 (AE014012) DNA biosynthesis protein [Yersinia pestis KIM]
Length = 466
Score = 608 bits (1567), Expect = e-173
Identities = 324/515 (62%), Positives = 384/515 (74%), Gaps = 54/515 (10%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
+S+ LWQQC+ L+DELP+ +F+ WIRPLQ E + L +YAPNRFVLDWV +KYL +
Sbjct: 5 VSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNIN 64
Query: 61 ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVS-AAPVV 119
LL + ++P L +GSK + ++ H P A APV PV+ +AP+
Sbjct: 65 GLLNDFCGTEVPLLRFEVGSKPA---------ARAH--NNPVTASVSAPVAPVTRSAPM- 112
Query: 120 VPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYL 179
PS + P +PE L + S +
Sbjct: 113 -----------RPSWDNSPAQPE------------------------------LSYRSNV 131
Query: 180 NRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKK 239
N TF+NFVEGKSNQLARAAA QVADN YNPLFLYGG GLGKTHL+HAVGN ++ +
Sbjct: 132 NPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMAR 191
Query: 240 NPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFH 299
NAKVVY+HSERFV DMVKALQ NAI EFKR+YRSVDALLIDDIQFFA KERSQEEFFH
Sbjct: 192 KANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFH 251
Query: 300 TFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQ 359
TFNALLEG QQ+ILTSDRYPKEI G+E+RLKSRFGWGLTVA+EPPELETRVAILMKKA++
Sbjct: 252 TFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADE 311
Query: 360 AKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDK 419
I LP + AFFIA+R+RSNVRELEGAL RVIA+++F GR ITI+ +RE+L+DLLALQ+K
Sbjct: 312 NDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEK 371
Query: 420 LVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGR 479
LV+IDNIQ+TVAEYYKIK++DLLSKRRSRSVARPRQ+AMAL+KELTNHSLPEIG AFGGR
Sbjct: 372 LVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGR 431
Query: 480 DHTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
DHTTVLHACRKI QLRE DI+ED+ NL+RTL++
Sbjct: 432 DHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS 466
>gb|AAA78257.1| (L47617) DnaA [Vibrio harveyi]
Length = 468
Score = 607 bits (1566), Expect = e-173
Identities = 321/515 (62%), Positives = 380/515 (73%), Gaps = 48/515 (9%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MS LW QC+ L++ELP+ +F+ W+RPLQ E + L ++APNRFVLDWV +KYL +
Sbjct: 1 MSSSLWLQCLQQLQEELPATEFSMWVRPLQAELNDNTLTLFAPNRFVLDWVRDKYLNSIN 60
Query: 61 ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVV 120
LL E +P+L +GS+R P+ A P++T PA V S+AP +
Sbjct: 61 RLLQEYCGNDVPSLRFEVGSRRVAAPKPA--PTRT-----------PADVAAESSAPAQL 107
Query: 121 PREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRT-ERNVQVEGALKHTSYL 179
+ P +T + + QV + H S +
Sbjct: 108 QARK----------------------------------PVHKTWDDDAQVIADINHRSNV 133
Query: 180 NRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKK 239
N F NFVEGKSNQL AAA QV+DN YNPLFLYGG GLGKTHL+HAVGN ++
Sbjct: 134 NPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVDN 193
Query: 240 NPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFH 299
NPNAKVVY+HSERFV DMVKALQ NAI EFKR+YRSVDALLIDDIQFFA KERSQEEFFH
Sbjct: 194 NPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFH 253
Query: 300 TFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQ 359
TFNALLEG QQ+ILTSDRYPKEI G+E+RLKSRFGWGLTVA+EPPELETRVAILMKKAE
Sbjct: 254 TFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAED 313
Query: 360 AKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDK 419
+I L + AFFIA+R+RSNVRELEGAL RVIA+++F GRPITI+ +RE+L+DLLALQ+K
Sbjct: 314 HQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEK 373
Query: 420 LVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGR 479
LV+IDNIQ+TVAEYYKIK++DLLSKRRSRSVARPRQ+AMAL+KELTNHSLPEIG AFGGR
Sbjct: 374 LVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGR 433
Query: 480 DHTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
DHTTVLHACRKI QLRE DI+EDY NL+RTL++
Sbjct: 434 DHTTVLHACRKIEQLREESHDIKEDYSNLIRTLSS 468
>dbj|BAC58274.1| (AP005073) chromosomal DNA replication initiator DnaA [Vibrio
parahaemolyticus]
Length = 468
Score = 607 bits (1566), Expect = e-173
Identities = 322/514 (62%), Positives = 378/514 (73%), Gaps = 46/514 (8%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MS LW QC+ L++ELP+ +F+ W+RPLQ E + L ++APNRFVLDWV +KYL +
Sbjct: 1 MSSSLWLQCLQQLQEELPATEFSMWVRPLQAELNDNTLTLFAPNRFVLDWVRDKYLNSIT 60
Query: 61 ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVV 120
LL E +P L +GS+ P+ A P++T P A AP Q + PV
Sbjct: 61 RLLQEYCGNDIPNLRFEVGSRPVSAPKPA--PTRT---PADVAAESSAPAQLQARKPVHK 115
Query: 121 PREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLN 180
++ DP A A A+ H S +N
Sbjct: 116 TWDD----------------------DPQAIA-------------------AINHRSNMN 134
Query: 181 RTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 240
F+NFVEGKSNQL AAA QV+DN YNPLFLYGG GLGKTHL+HAVGN ++ N
Sbjct: 135 PKHKFDNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVDNN 194
Query: 241 PNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHT 300
PNAKVVY+HSERFV DMVKALQ NAI EFKR+YRSVDALLIDDIQFFA KERSQEEFFHT
Sbjct: 195 PNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHT 254
Query: 301 FNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQA 360
FNALLEG QQ+ILTSDRYPKEI G+E+RLKSRFGWGLTVA+EPPELETRVAILMKKAE
Sbjct: 255 FNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAEDH 314
Query: 361 KIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKL 420
+I L + AFFIA+R+RSNVRELEGAL RVIA+++F GRPITI+ +RE+L+DLLALQ+KL
Sbjct: 315 QIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKL 374
Query: 421 VSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRD 480
V+IDNIQ+TVAEYYKIK++DLLSKRRSRSVARPRQ+AMAL+KELTNHSLPEIG AFGGRD
Sbjct: 375 VTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRD 434
Query: 481 HTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
HTTVLHACRKI QLRE DI+EDY NL+RTL++
Sbjct: 435 HTTVLHACRKIEQLREESHDIKEDYSNLIRTLSS 468
>gb|AAA02924.1|AAA02924 (M17353) DnaA [Serratia marcescens]
Length = 464
Score = 607 bits (1566), Expect = e-173
Identities = 323/514 (62%), Positives = 377/514 (73%), Gaps = 50/514 (9%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MS+ LWQQC+ L+DELP+ +F+ WIRPLQ E + L +YAPNRFVLDWV +KYL +
Sbjct: 1 MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNIN 60
Query: 61 ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVV 120
LL + P L +GSK
Sbjct: 61 GLLNDFCGTDAPLLRFEVGSK--------------------------------------- 81
Query: 121 PREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLN 180
P ++ T SVSS P AA AAP+ + N + L + S +N
Sbjct: 82 PITQVISQTVTASVSSAP-----------AAPAARTAAPSRPSWDNAAAQPELSYRSNVN 130
Query: 181 RTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 240
TF+NFVEGKSNQLARAAA QVADN YNPLFLYGG GLGKTHL+HAVGN ++ +
Sbjct: 131 PKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARK 190
Query: 241 PNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHT 300
NAKVVY+HSERFV DMVKALQ NAI EFKR+YRSVDALLIDDIQFFA KERSQEEFFHT
Sbjct: 191 ANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHT 250
Query: 301 FNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQA 360
FNALLEG QQ+ILTSDRYPKEI G+E+RLKSRFGWGLTVA+EPPELETRVAILMKKA++
Sbjct: 251 FNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADEN 310
Query: 361 KIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKL 420
I LP + AFFIA+R+RSNVRELEGAL RVIA+++F GR ITI+ +RE+L+DLLALQ+KL
Sbjct: 311 DIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKL 370
Query: 421 VSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRD 480
V+IDNIQ+TVAEYYKIK++DLLSKRRSRSVARPRQ+AMAL+KELTNHSLPEIG AFGGRD
Sbjct: 371 VTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRD 430
Query: 481 HTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
HTTVLHACRKI QLRE DI+ED+ NL+RTL++
Sbjct: 431 HTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS 464
>gb|AAL22697.1| (AE008879) DNA replication initiator protein [Salmonella
typhimurium LT2]
Length = 466
Score = 607 bits (1565), Expect = e-173
Identities = 330/514 (64%), Positives = 381/514 (74%), Gaps = 48/514 (9%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MS+ LWQQC+ L+DELP+ +F+ WIRPLQ E + L +YAPNRFVLDWV +KYL +
Sbjct: 1 MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNIN 60
Query: 61 ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVV 120
LL P L +G+K +QT P V AP Q +A P V
Sbjct: 61 GLLNTFCGADAPQLRFEVGTKPV---------TQTLKTPVHNVV---APAQTTTAQPQRV 108
Query: 121 PREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLN 180
AP+ S +PA A P R+ NV KHT
Sbjct: 109 ----------APAARSGWDN------------VPAPAEPTYRSNVNV------KHT---- 136
Query: 181 RTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 240
F+NFVEGKSNQLARAAA QVADN YNPLFLYGG GLGKTHL+HAVGN ++ +
Sbjct: 137 ----FDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARK 192
Query: 241 PNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHT 300
PNAKVVY+HSERFV DMVKALQ NAI EFKR+YRSVDALLIDDIQFFA KERSQEEFFHT
Sbjct: 193 PNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHT 252
Query: 301 FNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQA 360
FNALLEG QQ+ILTSDRYPKEI G+E+RLKSRFGWGLTVA+EPPELETRVAILMKKA++
Sbjct: 253 FNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADEN 312
Query: 361 KIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKL 420
I LP + AFFIA+R+RSNVRELEGAL RVIA+++F GR ITI+ +RE+L+DLLALQ+KL
Sbjct: 313 DIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKL 372
Query: 421 VSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRD 480
V+IDNIQ+TVAEYYKIKI+DLLSKRRSRSVARPRQ+AMAL+KELTNHSLPEIG AFGGRD
Sbjct: 373 VTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRD 432
Query: 481 HTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
HTTVLHACRKI QLRE DI+ED+ NL+RTL++
Sbjct: 433 HTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS 466
>gb|AAO71177.1| (AE016846) chromosomal replication initiator protein [Salmonella
enterica subsp. enterica serovar Typhi Ty2]
Length = 466
Score = 607 bits (1565), Expect = e-173
Identities = 330/514 (64%), Positives = 381/514 (74%), Gaps = 48/514 (9%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MS+ LWQQC+ L+DELP+ +F+ WIRPLQ E + L +YAPNRFVLDWV +KYL +
Sbjct: 1 MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNIN 60
Query: 61 ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVV 120
LL P L +G+K +QT P V AP Q +A P V
Sbjct: 61 GLLNTFCGADAPQLRFEVGTKPV---------TQTLKTPVHNVV---APTQTTTAQPQRV 108
Query: 121 PREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLN 180
AP+ S +PA A P R+ NV KHT
Sbjct: 109 ----------APAARSGWDN------------VPAPAEPTYRSNVNV------KHT---- 136
Query: 181 RTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 240
F+NFVEGKSNQLARAAA QVADN YNPLFLYGG GLGKTHL+HAVGN ++ +
Sbjct: 137 ----FDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARK 192
Query: 241 PNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHT 300
PNAKVVY+HSERFV DMVKALQ NAI EFKR+YRSVDALLIDDIQFFA KERSQEEFFHT
Sbjct: 193 PNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHT 252
Query: 301 FNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQA 360
FNALLEG QQ+ILTSDRYPKEI G+E+RLKSRFGWGLTVA+EPPELETRVAILMKKA++
Sbjct: 253 FNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADEN 312
Query: 361 KIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKL 420
I LP + AFFIA+R+RSNVRELEGAL RVIA+++F GR ITI+ +RE+L+DLLALQ+KL
Sbjct: 313 DIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKL 372
Query: 421 VSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRD 480
V+IDNIQ+TVAEYYKIKI+DLLSKRRSRSVARPRQ+AMAL+KELTNHSLPEIG AFGGRD
Sbjct: 373 VTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRD 432
Query: 481 HTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
HTTVLHACRKI QLRE DI+ED+ NL+RTL++
Sbjct: 433 HTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS 466
>emb|CAD03157.1| (AL627280) chromosomal replication initiator protein [Salmonella
enterica subsp. enterica serovar Typhi]
Length = 466
Score = 607 bits (1565), Expect = e-173
Identities = 330/514 (64%), Positives = 381/514 (74%), Gaps = 48/514 (9%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MS+ LWQQC+ L+DELP+ +F+ WIRPLQ E + L +YAPNRFVLDWV +KYL +
Sbjct: 1 MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNIN 60
Query: 61 ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVV 120
LL P L +G+K +QT P V AP Q +A P V
Sbjct: 61 GLLNTFCGADAPQLRFEVGTKPV---------TQTLKTPVHNVV---APTQTTTAQPQRV 108
Query: 121 PREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLN 180
AP+ S +PA A P R+ NV KHT
Sbjct: 109 ----------APAARSGWDN------------VPAPAEPTYRSNVNV------KHT---- 136
Query: 181 RTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 240
F+NFVEGKSNQLARAAA QVADN YNPLFLYGG GLGKTHL+HAVGN ++ +
Sbjct: 137 ----FDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARK 192
Query: 241 PNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHT 300
PNAKVVY+HSERFV DMVKALQ NAI EFKR+YRSVDALLIDDIQFFA KERSQEEFFHT
Sbjct: 193 PNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHT 252
Query: 301 FNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQA 360
FNALLEG QQ+ILTSDRYPKEI G+E+RLKSRFGWGLTVA+EPPELETRVAILMKKA++
Sbjct: 253 FNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADEN 312
Query: 361 KIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKL 420
I LP + AFFIA+R+RSNVRELEGAL RVIA+++F GR ITI+ +RE+L+DLLALQ+KL
Sbjct: 313 DIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKL 372
Query: 421 VSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRD 480
V+IDNIQ+TVAEYYKIKI+DLLSKRRSRSVARPRQ+AMAL+KELTNHSLPEIG AFGGRD
Sbjct: 373 VTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRD 432
Query: 481 HTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
HTTVLHACRKI QLRE DI+ED+ NL+RTL++
Sbjct: 433 HTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS 466
>gb|AAA02815.1| (M17352) dnaA protein [Salmonella typhimurium]
Length = 466
Score = 605 bits (1561), Expect = e-172
Identities = 329/514 (64%), Positives = 380/514 (73%), Gaps = 48/514 (9%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MS+ LWQQC+ L+DELP+ +F+ WIRPLQ E + L +YAPNRFVLDWV +KYL +
Sbjct: 1 MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNIN 60
Query: 61 ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVV 120
LL P L +G+K +QT P V AP Q + P V
Sbjct: 61 GLLNTFCGADAPQLRFEVGTKPV---------TQTLKTPVHNVV---APAQTTTTQPQRV 108
Query: 121 PREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLN 180
AP+ S +PA A P R+ NV KHT
Sbjct: 109 ----------APAARSGWDN------------VPAPAEPTYRSNVNV------KHT---- 136
Query: 181 RTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 240
F+NFVEGKSNQLARAAA QVADN YNPLFLYGG GLGKTHL+HAVGN ++ +
Sbjct: 137 ----FDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARK 192
Query: 241 PNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHT 300
PNAKVVY+HSERFV DMVKALQ NAI EFKR+YRSVDALLIDDIQFFA KERSQEEFFHT
Sbjct: 193 PNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHT 252
Query: 301 FNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQA 360
FNALLEG QQ+ILTSDRYPKEI G+E+RLKSRFGWGLTVA+EPPELETRVAILMKKA++
Sbjct: 253 FNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADEN 312
Query: 361 KIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKL 420
I LP + AFFIA+R+RSNVRELEGAL RVIA+++F GR ITI+ +RE+L+DLLALQ+KL
Sbjct: 313 DIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKL 372
Query: 421 VSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRD 480
V+IDNIQ+TVAEYYKIKI+DLLSKRRSRSVARPRQ+AMAL+KELTNHSLPEIG AFGGRD
Sbjct: 373 VTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRD 432
Query: 481 HTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
HTTVLHACRKI QLRE DI+ED+ NL+RTL++
Sbjct: 433 HTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS 466
>gb|AAA62053.1| (L10328) dnaA (CG Site No. 851) [Escherichia coli]
Length = 471
Score = 601 bits (1550), Expect = e-171
Identities = 324/515 (62%), Positives = 381/515 (73%), Gaps = 49/515 (9%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
+S+ LWQQC+ L+DELP+ +F+ WIRPLQ E + L +YAPNRFVLDWV +KYL +
Sbjct: 5 VSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNIN 64
Query: 61 ELLGERGEGQLPALSLLIGSKR-SRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVV 119
LL P L +G+K ++TP+AA+ ++VA P VA
Sbjct: 65 GLLTSFCGADAPQLRFEVGTKPVTQTPQAAVT---SNVAAPAQVA--------------- 106
Query: 120 VPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYL 179
+ P APS S +PA A P R+ NV KHT
Sbjct: 107 ----QTQPQRAAPSTRSGWDN------------VPAPAEPTYRSNVNV------KHT--- 141
Query: 180 NRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKK 239
F+NFVEGKSNQLARAAA QVADN YNPLFLYGG GLGKTHL+HAVGN ++ +
Sbjct: 142 -----FDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMAR 196
Query: 240 NPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFH 299
PNAKVVY+HSERFV DMVKALQ NAI EFKR+YRSVDALLIDDIQFFA KERSQEEFFH
Sbjct: 197 KPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFH 256
Query: 300 TFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQ 359
TFN LLEG QQ+ILTSDRYPKEI G+E+RLKSRFGWGLTVA+EPPELETRVAILMKKA++
Sbjct: 257 TFNXLLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADE 316
Query: 360 AKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDK 419
I LP + AFFIA+R+RSNVRELEGAL RVIA+++F GR ITI+ +RE+L+DLLALQ+K
Sbjct: 317 NDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEK 376
Query: 420 LVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGR 479
LV+IDNIQ+TVAEYYKIK++DLLSKRRSRS P Q+AMAL+KELTNHSLPEIG AFGGR
Sbjct: 377 LVTIDNIQKTVAEYYKIKVADLLSKRRSRSGXGPGQMAMALAKELTNHSLPEIGDAFGGR 436
Query: 480 DHTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
DHTTVLHACRKI QLRE DI+ED+ NL+RTL++
Sbjct: 437 DHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS 471
>gb|AAO09488.1|AE016800_93 (AE016800) DNA replication initiator DnaA [Vibrio vulnificus CMCP6]
Length = 459
Score = 590 bits (1520), Expect = e-168
Identities = 312/503 (62%), Positives = 366/503 (72%), Gaps = 48/503 (9%)
Query: 13 LRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLLELLGERGEGQLP 72
L++ELP+ +F+ W+RPLQ E + L ++APNRFVLDWV +KYL + LL E +P
Sbjct: 4 LQEELPATEFSMWVRPLQAELNDNTLTLFAPNRFVLDWVRDKYLNSINRLLQEYCGHDIP 63
Query: 73 ALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAP 132
L +GS+ P AP PAP +
Sbjct: 64 NLRFEVGSR-------------------PVAAPKPAPTRT-------------------- 84
Query: 133 SVSSDPYEPEEPSIDPLAAAMPAGAAPAVRT-ERNVQVEGALKHTSYLNRTFTFENFVEG 191
P + + + A A P +T + + Q + H S +N F NFVEG
Sbjct: 85 --------PADVAAESSAPAQLQARKPVHKTWDDDAQAIADINHRSNVNPKHKFNNFVEG 136
Query: 192 KSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSE 251
KSNQL AAA QVADN YNPLFLYGG GLGKTHL+HAVGN ++ PNAKVVY+HSE
Sbjct: 137 KSNQLGLAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSE 196
Query: 252 RFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQV 311
RFV DMVKALQ NAI EFKR+YRSVDALLIDDIQFFA KERSQEEFFHTFNALLEG QQ+
Sbjct: 197 RFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQI 256
Query: 312 ILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQAKIELPHDAAFF 371
ILTSDRYPKEI G+E+RLKSRFGWGLTVA+EPPELETRVAILMKKAE +I L + AFF
Sbjct: 257 ILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAEDHQIHLADEVAFF 316
Query: 372 IAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKLVSIDNIQRTVA 431
IA+R+RSNVRELEGAL RVIA+++F GRPITI+ +RE+L+DLLALQ+KLV+IDNIQ+TVA
Sbjct: 317 IAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKLVTIDNIQKTVA 376
Query: 432 EYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRDHTTVLHACRKI 491
EYYKIK++DLLSKRRSRSVARPRQ+AMAL+KELTNHSLPEIG AFGGRDHTTVLHACRKI
Sbjct: 377 EYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKI 436
Query: 492 AQLRESDADIREDYKNLLRTLTT 514
QLRE DI+EDY NL+RTL++
Sbjct: 437 EQLREESHDIKEDYSNLIRTLSS 459
>gb|AAO89571.1| (AE016960) chromosomal replication initiator protein DnaA [Coxiella
burnetii RSA 493]
Length = 451
Score = 585 bits (1508), Expect = e-166
Identities = 308/515 (59%), Positives = 376/515 (73%), Gaps = 69/515 (13%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQ-VEAEGDELRVYAPNRFVLDWVNEKYLGRL 59
+ LW +C+ LRDE+P QQ+NTWIRPL +E++ + L + APNRFVLDW+NE++L R+
Sbjct: 3 LPTSLWDKCLGYLRDEIPPQQYNTWIRPLHAIESKQNGLLLLAPNRFVLDWINERFLNRI 62
Query: 60 LELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVV 119
ELL E + P + L IGS+ + P
Sbjct: 63 TELLDELSDTP-PQIRLQIGSRSTEMP--------------------------------- 88
Query: 120 VPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHT-SY 178
+ + +EP AAA PAG + HT +
Sbjct: 89 ---------------TKNSHEPSHRK----AAAPPAGTT--------------ISHTQAN 115
Query: 179 LNRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLK 238
+N FTF++FVEGKSNQLARAAA QVA+N YNPLF+YGGVGLGKTHLMHAVGN +L+
Sbjct: 116 INSNFTFDSFVEGKSNQLARAAATQVAENPGQAYNPLFIYGGVGLGKTHLMHAVGNAILR 175
Query: 239 KNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFF 298
K+ + KV+YLHSERFVADM+KALQ NA+NEFKRFYRS++ALLIDDIQFFA K+RSQEEFF
Sbjct: 176 KDSSKKVLYLHSERFVADMIKALQHNAMNEFKRFYRSLNALLIDDIQFFAGKDRSQEEFF 235
Query: 299 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAE 358
HTFNALL+G QQ+ILT DRYPKEI GLEERL+SRFGWGLTVA+EPPELETRVAILM KAE
Sbjct: 236 HTFNALLDGQQQIILTCDRYPKEINGLEERLQSRFGWGLTVAIEPPELETRVAILMSKAE 295
Query: 359 QAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQD 418
Q K+ LPH+ AFFIA+ I+SNVRELEGALKRVIA++HF G+ IT++ RE+LKDLL LQ
Sbjct: 296 QLKVHLPHEVAFFIAKHIQSNVRELEGALKRVIANAHFTGQSITVDFTREALKDLLTLQA 355
Query: 419 KLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGG 478
+L++I+NIQ+TVAEYYKIK++DLL+KRR+RSVARPRQ+AMAL+KELTNHSLPEIG AFGG
Sbjct: 356 RLITIENIQKTVAEYYKIKVADLLAKRRNRSVARPRQMAMALAKELTNHSLPEIGDAFGG 415
Query: 479 RDHTTVLHACRKIAQLRESDADIREDYKNLLRTLT 513
RDHTTVLHACRK+ +L + DI EDYKNL+R L+
Sbjct: 416 RDHTTVLHACRKVKELLATSLDILEDYKNLMRILS 450
>gb|AAM67584.1| (AE014077) chromosomal replication initiator protein [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
Length = 454
Score = 506 bits (1303), Expect = e-142
Identities = 249/339 (73%), Positives = 296/339 (87%)
Query: 175 HTSYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGN 234
H S +N+ +FENF+EGKSNQLARAAA QVA N + YNPLFLYGG GLGKTHL+HA+GN
Sbjct: 115 HRSNINKKHSFENFIEGKSNQLARAAASQVAKNPGNSYNPLFLYGGTGLGKTHLLHAIGN 174
Query: 235 HLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQ 294
+L N K++Y+HSERFV DMVKALQ NAI +FK +YRSVDALLIDDIQFFA KERSQ
Sbjct: 175 GILAYKYNVKIIYMHSERFVQDMVKALQNNAIEKFKLYYRSVDALLIDDIQFFAHKERSQ 234
Query: 295 EEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILM 354
EEFFHTFNALLEG QQ+ILTSDRYPKEI G+E+RLKSRFGWGLTVA++PPELETRVAIL+
Sbjct: 235 EEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIDPPELETRVAILI 294
Query: 355 KKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLL 414
KKA++ I L + AFFIA+ +RSNVRELEGAL RVI +++F R IT+E +RE+L+D+L
Sbjct: 295 KKADENNIVLSDEVAFFIAKHLRSNVRELEGALNRVIVNANFTHRSITVEFVREALRDIL 354
Query: 415 ALQDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGV 474
ALQ+KLV+I NIQ+TVAEYYKIK++DLLS+RRSRSVARPRQ+AMA++KELTNHSLPEIG
Sbjct: 355 ALQEKLVTIANIQKTVAEYYKIKVADLLSRRRSRSVARPRQMAMAMAKELTNHSLPEIGD 414
Query: 475 AFGGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTLT 513
AF GRDHTTVLHACRKI QLR+ + DI+ED+ NL+RTL+
Sbjct: 415 AFSGRDHTTVLHACRKIEQLRKENHDIKEDFSNLIRTLS 453
Score = 73.9 bits (180), Expect = 2e-12
Identities = 31/63 (49%), Positives = 46/63 (73%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MS+ LW+QC+D L+ ELPS +F+ WIR L+ + + L +YAPN+F+LDWV +KYL
Sbjct: 1 MSLCLWKQCLDRLQSELPSTEFSMWIRSLKAKLNNNILEIYAPNQFILDWVKDKYLIHFK 60
Query: 61 ELL 63
++L
Sbjct: 61 KIL 63
>gb|AAC38106.1| (AF008210) DNA biosynthesis initiating protein [Buchnera
aphidicola]
Length = 454
Score = 506 bits (1303), Expect = e-142
Identities = 249/339 (73%), Positives = 296/339 (87%)
Query: 175 HTSYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGN 234
H S +N+ +FENF+EGKSNQLARAAA QVA N + YNPLFLYGG GLGKTHL+HA+GN
Sbjct: 115 HRSNINKKHSFENFIEGKSNQLARAAASQVAKNPGNSYNPLFLYGGTGLGKTHLLHAIGN 174
Query: 235 HLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQ 294
+L N K++Y+HSERFV DMVKALQ NAI +FK +YRSVDALLIDDIQFFA KERSQ
Sbjct: 175 GILAYKYNVKIIYMHSERFVQDMVKALQNNAIEKFKLYYRSVDALLIDDIQFFAHKERSQ 234
Query: 295 EEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILM 354
EEFFHTFNALLEG QQ+ILTSDRYPKEI G+E+RLKSRFGWGLTVA++PPELETRVAIL+
Sbjct: 235 EEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIDPPELETRVAILI 294
Query: 355 KKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLL 414
KKA++ I L + AFFIA+ +RSNVRELEGAL RVI +++F R IT+E +RE+L+D+L
Sbjct: 295 KKADENNIVLSDEVAFFIAKHLRSNVRELEGALNRVIVNANFTHRSITVEFVREALRDIL 354
Query: 415 ALQDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGV 474
ALQ+KLV+I NIQ+TVAEYYKIK++DLLS+RRSRSVARPRQ+AMA++KELTNHSLPEIG
Sbjct: 355 ALQEKLVTIANIQKTVAEYYKIKVADLLSRRRSRSVARPRQMAMAMAKELTNHSLPEIGD 414
Query: 475 AFGGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTLT 513
AF GRDHTTVLHACRKI QLR+ + DI+ED+ NL+RTL+
Sbjct: 415 AFSGRDHTTVLHACRKIEQLRKENHDIKEDFSNLIRTLS 453
Score = 73.9 bits (180), Expect = 2e-12
Identities = 31/63 (49%), Positives = 46/63 (73%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MS+ LW+QC+D L+ ELPS +F+ WIR L+ + + L +YAPN+F+LDWV +KYL
Sbjct: 1 MSLCLWKQCLDRLQSELPSTEFSMWIRSLKAKLNNNILEIYAPNQFILDWVKDKYLIHFK 60
Query: 61 ELL 63
++L
Sbjct: 61 KIL 63
>gb|AAA73149.1| (M80817) dnaA [Buchnera aphidicola]
Length = 431
Score = 506 bits (1303), Expect = e-142
Identities = 249/339 (73%), Positives = 296/339 (87%)
Query: 175 HTSYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGN 234
H S +N+ +FENF+EGKSNQLARAAA QVA N + YNPLFLYGG GLGKTHL+HA+GN
Sbjct: 92 HRSNINKKHSFENFIEGKSNQLARAAASQVAKNPGNSYNPLFLYGGTGLGKTHLLHAIGN 151
Query: 235 HLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQ 294
+L N K++Y+HSERFV DMVKALQ NAI +FK +YRSVDALLIDDIQFFA KERSQ
Sbjct: 152 GILAYKYNVKIIYMHSERFVQDMVKALQNNAIEKFKLYYRSVDALLIDDIQFFAHKERSQ 211
Query: 295 EEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILM 354
EEFFHTFNALLEG QQ+ILTSDRYPKEI G+E+RLKSRFGWGLTVA++PPELETRVAIL+
Sbjct: 212 EEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIDPPELETRVAILI 271
Query: 355 KKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLL 414
KKA++ I L + AFFIA+ +RSNVRELEGAL RVI +++F R IT+E +RE+L+D+L
Sbjct: 272 KKADENNIVLSDEVAFFIAKHLRSNVRELEGALNRVIVNANFTHRSITVEFVREALRDIL 331
Query: 415 ALQDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGV 474
ALQ+KLV+I NIQ+TVAEYYKIK++DLLS+RRSRSVARPRQ+AMA++KELTNHSLPEIG
Sbjct: 332 ALQEKLVTIANIQKTVAEYYKIKVADLLSRRRSRSVARPRQMAMAMAKELTNHSLPEIGD 391
Query: 475 AFGGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTLT 513
AF GRDHTTVLHACRKI QLR+ + DI+ED+ NL+RTL+
Sbjct: 392 AFSGRDHTTVLHACRKIEQLRKENHDIKEDFSNLIRTLS 430
Score = 45.8 bits (107), Expect = 6e-04
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 25 WIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLLELL 63
WIR L+ + + L +YAPN+F+LDWV +KYL ++L
Sbjct: 2 WIRSLKAKLNNNILEIYAPNQFILDWVKDKYLIHFKKIL 40
>gb|AAK03245.1| (AE006156) DnaA [Pasteurella multocida]
Length = 451
Score = 500 bits (1288), Expect = e-141
Identities = 269/511 (52%), Positives = 342/511 (66%), Gaps = 70/511 (13%)
Query: 5 LWQQCVDLLRDELPSQQFNTWIRPLQVE-AEGDELRVYAPNRFVLDWVNEKYLGRLLELL 63
LWQ+C+ L+D++ F+TW+RPLQ + + + + +YA N F+ V+E YL +L ++
Sbjct: 8 LWQECLLQLQDQISLTDFSTWLRPLQADFSVQNTIVLYASNVFIKQKVDESYLAQLTKVA 67
Query: 64 GERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPRE 123
E + + +G K P P P QP SA P +E
Sbjct: 68 QELSGNAELVVQVKVGVK-----------------------PEPKPAQP-SALPTHHNKE 103
Query: 124 ELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLNRTF 183
E P T SYLN
Sbjct: 104 ENKPQTVI--------------------------------------------RSYLNPKH 119
Query: 184 TFENFVEGKSNQLARAAAWQVADNL-KHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPN 242
FENFVEGKSNQLARA A +VADN + NPLFLYGG GLGKTHL+HA+GN +L +N N
Sbjct: 120 VFENFVEGKSNQLARAVAQKVADNPGEPSSNPLFLYGGTGLGKTHLLHAIGNGILSRNTN 179
Query: 243 AKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFN 302
A+V+Y+H+ F+ MV A++ N ++EFK+FYRS+DALL+DDIQFFA KE++QEEFFH FN
Sbjct: 180 ARVLYIHANNFMQQMVNAVRDNKMDEFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFN 239
Query: 303 ALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQAKI 362
L + G+Q+ILTSDRYPKEIE LEERLKSRFGWGLT A+EPPELETRVAIL+KKAE+ I
Sbjct: 240 NLFDTGRQIILTSDRYPKEIEKLEERLKSRFGWGLTTAIEPPELETRVAILLKKAEEKNI 299
Query: 363 ELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKLVS 422
LP + AFFI Q++R+NVR+LEGAL RV A++ FMG ITI+ +RE+LKD+LALQDKLV+
Sbjct: 300 YLPEEVAFFIGQKLRTNVRDLEGALNRVSANAEFMGAAITIDFVRETLKDMLALQDKLVT 359
Query: 423 IDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRDHT 482
++NIQ+ VAEYY+IK+SDL K RSRS+ARPRQ+AMALSKELTN SLPEIG FG +DHT
Sbjct: 360 VENIQKVVAEYYRIKVSDLKGKSRSRSIARPRQLAMALSKELTNRSLPEIGKNFGDKDHT 419
Query: 483 TVLHACRKIAQLRESDADIREDYKNLLRTLT 513
TVLHACRKIA+LRE + + ED+ NL+RTL+
Sbjct: 420 TVLHACRKIAELREQEHSLEEDWSNLIRTLS 450
>dbj|BAB12740.1| (AP001118) chromosomal replication initiator protein dnaA [Buchnera
aphidicola str. APS (Acyrthosiphon pisum)]
Length = 454
Score = 478 bits (1230), Expect = e-134
Identities = 230/341 (67%), Positives = 292/341 (85%)
Query: 173 LKHTSYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAV 232
L + S +N+ + F+NFVEGKSNQLAR+AA+Q A N + YNPLFLYG GLGKTHL+HA+
Sbjct: 113 LSYRSNINKRYNFQNFVEGKSNQLARSAAFQAARNPGNSYNPLFLYGATGLGKTHLLHAI 172
Query: 233 GNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKER 292
GN +L + K+++++SE FV DMVKAL+ NAI +FK +YRSVDALLIDDIQFFA KER
Sbjct: 173 GNEILSYKYDIKIIFMNSECFVQDMVKALKNNAIEKFKLYYRSVDALLIDDIQFFAHKER 232
Query: 293 SQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAI 352
SQEEFFHTFN L+EG QQ+ILTSDRYPKEI G+E+RLKSRF WGLT+A++PPE+ETRVAI
Sbjct: 233 SQEEFFHTFNTLIEGNQQIILTSDRYPKEINGVEDRLKSRFSWGLTIAIDPPEIETRVAI 292
Query: 353 LMKKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKD 412
L+KKA+Q + L ++ AFFIA+ +RSNVRELEGAL RVI +S F R IT++ RE+L+D
Sbjct: 293 LIKKADQNNVILSNEVAFFIAKHLRSNVRELEGALNRVILNSRFTHRAITVDFAREALQD 352
Query: 413 LLALQDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEI 472
+LA+Q+K+++IDNIQ+TVA+YYKIK+SDLLSK+RSRS+ARPRQ+AMA++K+LTNHSLPEI
Sbjct: 353 ILAVQEKIITIDNIQKTVAKYYKIKVSDLLSKKRSRSIARPRQMAMAMAKKLTNHSLPEI 412
Query: 473 GVAFGGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTLT 513
G AF GRDHTTVLHAC KI QLR+ + DI++D+ NL+RTL+
Sbjct: 413 GEAFSGRDHTTVLHACCKIEQLRKENHDIKKDFLNLIRTLS 453
Score = 77.4 bits (189), Expect = 2e-13
Identities = 32/63 (50%), Positives = 48/63 (76%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MS+ LW+QC+D L+DELP+ +F+ WIR L+ + + L +YAPN+FVL+WV +KYL L
Sbjct: 1 MSLCLWKQCLDRLQDELPNTEFSMWIRSLKAKLNNNILEIYAPNKFVLEWVKDKYLNHLK 60
Query: 61 ELL 63
++L
Sbjct: 61 KIL 63
>emb|CAD16939.1| (AL646075) PROBABLE CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA
[Ralstonia solanacearum]
Length = 522
Score = 474 bits (1219), Expect = e-133
Identities = 260/527 (49%), Positives = 353/527 (66%), Gaps = 27/527 (5%)
Query: 4 ELWQQCVDLLRDELPSQQFNTWIRPL---QVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
+ W L EL QQF TWI+PL + + LR+ APNRF LDWV ++ GR+
Sbjct: 3 DFWHAASAQLESELTPQQFKTWIKPLTPLSFDEQACMLRIAAPNRFKLDWVKSQFSGRIQ 62
Query: 61 ELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPP--PVAPPPAPVQPVS---- 114
L + E Q+ +L + R +AA+ P+ +AP P P+A Q V
Sbjct: 63 SLACDYWEMQVDVQFVLDPTAGQR--QAAMQPA---LAPMPMQPLAAQTMQAQAVPREAP 117
Query: 115 AAPVVVPREELPPVTTAPSVSSDPYEPEEPSIDPLAAA-----MPAGAAPAVRTERNVQ- 168
A P + P E P T A + + + + P +D A+ +PA AAPAV +
Sbjct: 118 ARPTMAPYRETPMATAAHAAA----DIDVPVMDAAEASTQSYRVPAPAAPAVMGGLSAPP 173
Query: 169 ---VEGALKHTSYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGK 225
V+ + S LN TF+N V GK+NQLARAAA QVA+N YNPL+LYGGVGLGK
Sbjct: 174 AAPVDDTVHERSRLNPILTFDNLVTGKANQLARAAAVQVANNPGKSYNPLYLYGGVGLGK 233
Query: 226 THLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQ 285
THL+HA+GN +L +NP A++ Y+H+E++V+D+VKA Q A ++FKR+Y S+D LLIDDIQ
Sbjct: 234 THLIHAIGNFMLMENPRARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQ 293
Query: 286 FFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPE 345
FF+ K R+QEEFF+ F AL+ QVI+TSD YPKEI G+++RL SRF GLTVA+EPPE
Sbjct: 294 FFSGKNRTQEEFFYAFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPE 353
Query: 346 LETRVAILMKKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIEL 405
LE RVAILMKKA+ + +P + AFF+A+ +RSNVRELEGAL++++A+S+F G+ ITIE+
Sbjct: 354 LEMRVAILMKKAQAENVTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEV 413
Query: 406 IRESLKDLLALQDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELT 465
RE+LKDLL +Q++ +S++NIQ+T A++Y IK++D+ SK+R ++ARPRQ+AM L+KELT
Sbjct: 414 TREALKDLLTVQNRQISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 473
Query: 466 NHSLPEIGVAFGGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTL 512
SLPEIG FGGRDHTTVLHA RKIA R DA + + L +TL
Sbjct: 474 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 520
>gb|AAC22655.1| (U32780) chromosomal replication initiator protein (dnaA)
[Haemophilus influenzae Rd]
Length = 454
Score = 470 bits (1209), Expect = e-131
Identities = 255/511 (49%), Positives = 337/511 (65%), Gaps = 65/511 (12%)
Query: 5 LWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDE-LRVYAPNRFVLDWVNEKYLGRLLELL 63
LWQ C+ L+D++ + +TW+RPLQ + D + +YA N FV WV YL ++ ++
Sbjct: 6 LWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQIQQIC 65
Query: 64 GERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPRE 123
+ +SL G V AP +V
Sbjct: 66 QTLAQNPELRISLKEG---------------------------------VKPAPKIV--- 89
Query: 124 ELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLNRTF 183
E P T+ S S+ ++ E + ++K S+LN
Sbjct: 90 ESTPNTSLRSESAVDFQAESSA--------------------------SVKFESHLNTKH 123
Query: 184 TFENFVEGKSNQLARAAAWQVADNL-KHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPN 242
F+NFVEGKSNQLARA ++A + NP FLYGG GLGKTHL+HA+GN +L PN
Sbjct: 124 LFDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILADKPN 183
Query: 243 AKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFN 302
A+V+Y+H+ F+ MVKA++ N +++FK+FYRS+DALL+DDIQFFA KE++QEEFFH FN
Sbjct: 184 ARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFN 243
Query: 303 ALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQAKI 362
+L E G+Q+ILTSDRYPKEIE +EERLKSRFGWGLT A+EPP+LETRVAIL+KKAE+ +
Sbjct: 244 SLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNM 303
Query: 363 ELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKLVS 422
LP + AFFIAQR+R+NVRELEGAL RV A F G I I+ +R++LKD+LALQ++LV+
Sbjct: 304 NLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKDILALQERLVT 363
Query: 423 IDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRDHT 482
I+NIQ+ VAEYY+IK+SDL SK R+RSV RPRQ+AMAL+KELTN SLPEIG AF RDHT
Sbjct: 364 IENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAKELTNRSLPEIGRAF-DRDHT 422
Query: 483 TVLHACRKIAQLRESDADIREDYKNLLRTLT 513
TVL+ACR++ + RE D I+ED+ NL+RTL+
Sbjct: 423 TVLNACREVPKFREQDNSIQEDWANLIRTLS 453
>gb|AAM34893.1| (AE011623) chromosomal replication initiator [Xanthomonas
axonopodis pv. citri str. 306]
Length = 442
Score = 464 bits (1195), Expect = e-130
Identities = 255/513 (49%), Positives = 334/513 (65%), Gaps = 74/513 (14%)
Query: 3 VELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLLEL 62
++ W +C++ L E P + +TW++PLQ E GD + +YAPN F++D V E+YL R+ EL
Sbjct: 1 MDAWPRCLERLEAEFPPEDVHTWLKPLQAEDRGDSIVLYAPNAFIVDQVRERYLPRIREL 60
Query: 63 LGER-GEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVP 121
L G G + +L +GS+ P AP PAP APV VP
Sbjct: 61 LAYFVGNGDV---ALAVGSR--------------------PRAPEPAP------APVAVP 91
Query: 122 REELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLNR 181
+AP AAP V N L+
Sbjct: 92 --------SAPQ-----------------------AAPIVPFAGN------------LDS 108
Query: 182 TFTFENFVEGKSNQLARAAAWQVADNL-KHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 240
+TF NFVEG+SNQL AAA Q A +NPL LYG GLGKTHLM A GN L + N
Sbjct: 109 HYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAAGNALRQAN 168
Query: 241 PNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHT 300
P AKV+YL SE+F + M++ALQ A+++FKR ++ +DALLIDDIQFFA K+R+QEEFFHT
Sbjct: 169 PAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDRTQEEFFHT 228
Query: 301 FNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQA 360
FNAL +G QQ+ILT DRYP+E+EGLE RLKSR WGL+VA++PP+ ETR AI++ KA +
Sbjct: 229 FNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKARER 288
Query: 361 KIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKL 420
E+P D AF IA+++RSNVR+LEGAL ++A ++F GR IT+E +E+L+DLL Q +
Sbjct: 289 GAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRDLLRAQQQA 348
Query: 421 VSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRD 480
+ I NIQ+TVA+YY +++ DLLSKRR+RS+ARPRQVAMAL+KELT HSLPEIG AF GRD
Sbjct: 349 IGIPNIQKTVADYYGLQMKDLLSKRRTRSLARPRQVAMALAKELTEHSLPEIGDAFAGRD 408
Query: 481 HTTVLHACRKIAQLRESDADIREDYKNLLRTLT 513
HTTVLHACR+I L E+D +RED++ L+R L+
Sbjct: 409 HTTVLHACRQIRTLMEADGKLREDWEKLIRKLS 441
>gb|AAM39320.1| (AE012093) chromosomal replication initiator [Xanthomonas
campestris pv. campestris str. ATCC 33913]
Length = 442
Score = 460 bits (1184), Expect = e-129
Identities = 249/513 (48%), Positives = 329/513 (64%), Gaps = 74/513 (14%)
Query: 3 VELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLLEL 62
++ W +C++ L E P + +TW++PLQ E GD + +YAPN F+++ V E+YL R+ EL
Sbjct: 1 MDAWPRCLERLEAEFPPEDVHTWLKPLQAEDRGDSIVLYAPNAFIVEQVRERYLPRIREL 60
Query: 63 LGE-RGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVP 121
L G G++ +L +GS+ P AP P P
Sbjct: 61 LAYFAGNGEV---ALAVGSR--------------------PRAPEPLPA----------- 86
Query: 122 REELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLNR 181
P A A AAP V N L+
Sbjct: 87 --------------------------PQAVASAPAAAPIVPFAGN------------LDS 108
Query: 182 TFTFENFVEGKSNQLARAAAWQVADNL-KHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 240
+TF NFVEG+SNQL AAA Q A +NPL LYG GLGKTHLM A GN L + N
Sbjct: 109 HYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAAGNALRQAN 168
Query: 241 PNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHT 300
P AKV+YL SE+F + M++ALQ A+++FKR ++ +DALLIDDIQFFA K+R+QEEFFHT
Sbjct: 169 PAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDRTQEEFFHT 228
Query: 301 FNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQA 360
FNAL +G QQ+ILT DRYP+E+EGLE RLKSR WGL+VA++PP+ ETR AI++ KA +
Sbjct: 229 FNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKARER 288
Query: 361 KIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKL 420
E+P D AF IA+++RSNVR+LEGAL ++A ++F GR IT+E +E+L+DLL Q +
Sbjct: 289 GAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRDLLRAQQQA 348
Query: 421 VSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRD 480
+ I NIQ+TVA+YY +++ DLLSKRR+RS+ARPRQVAMAL+KELT HSLPEIG AF GRD
Sbjct: 349 IGIPNIQKTVADYYGLQMKDLLSKRRTRSLARPRQVAMALAKELTEHSLPEIGDAFAGRD 408
Query: 481 HTTVLHACRKIAQLRESDADIREDYKNLLRTLT 513
HTTVLHACR+I L E+D +RED++ L+R L+
Sbjct: 409 HTTVLHACRQIRTLMEADGKLREDWEKLIRKLS 441
>gb|AAP95742.1| (AE017153) chromosomal replication initiator protein [Haemophilus
ducreyi 35000HP]
Length = 448
Score = 454 bits (1168), Expect = e-127
Identities = 222/342 (64%), Positives = 278/342 (81%), Gaps = 1/342 (0%)
Query: 174 KHTSYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGY-NPLFLYGGVGLGKTHLMHAV 232
K + LN TF+NFV+GKSNQLA+A A QVADN + NP LYGG GLGKTHL+HAV
Sbjct: 107 KFKTGLNGRLTFDNFVQGKSNQLAKAVAQQVADNPGESHCNPFSLYGGTGLGKTHLLHAV 166
Query: 233 GNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKER 292
GN +LK+NP A+VVY+HSERFV DMVKAL+ N I FK+FYRS+D L+IDDIQFFA+KE
Sbjct: 167 GNEILKRNPQARVVYIHSERFVQDMVKALKNNTIENFKKFYRSLDVLMIDDIQFFAKKEA 226
Query: 293 SQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAI 352
SQEEFFHTFN+L E +Q+IL SD +PK IE +EER+KSR WG++ A+EPPELETRVAI
Sbjct: 227 SQEEFFHTFNSLFERNKQIILASDHFPKNIENIEERIKSRLNWGVSTAIEPPELETRVAI 286
Query: 353 LMKKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKD 412
LMKKAE+ +ELP + AF++ Q++R+NVRELEGA+ RV A +F R ITI+ +RE+LKD
Sbjct: 287 LMKKAEERNVELPEEVAFYLGQKLRTNVRELEGAINRVSAWCNFTKRQITIDAVRETLKD 346
Query: 413 LLALQDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEI 472
L+A D LV+I+NIQ+ VAEYY IK++DL SK R+RS+ARPRQ+AMAL+KELT+HSLPEI
Sbjct: 347 LIASYDHLVTIENIQKIVAEYYNIKMADLKSKSRTRSIARPRQMAMALAKELTSHSLPEI 406
Query: 473 GVAFGGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
G FGGRDHTTV+HAC+ I +LR++D I+EDY NL R L++
Sbjct: 407 GREFGGRDHTTVMHACKTINELRDTDNSIQEDYTNLTRKLSS 448
Score = 58.9 bits (141), Expect = 7e-08
Identities = 24/77 (31%), Positives = 47/77 (61%)
Query: 5 LWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLLELLG 64
LW C++ L+ ++ ++TW+RPLQ +EL +YA N FV +WV +K+L +++L
Sbjct: 8 LWSDCLNHLQTKVSPIDYSTWLRPLQASFANEELTLYAQNPFVENWVKDKFLTEIIDLAR 67
Query: 65 ERGEGQLPALSLLIGSK 81
+ + +++ +G+K
Sbjct: 68 FLSKNEQLKITIRVGNK 84
>gb|AAL30089.1| (AY057934) chromosomal replication initiator protein DnaA
[Xanthomonas campestris pv. campestris]
Length = 442
Score = 454 bits (1167), Expect = e-127
Identities = 247/514 (48%), Positives = 331/514 (64%), Gaps = 76/514 (14%)
Query: 3 VELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLLEL 62
++ W +C++ L E P + +TW++PLQ E GD + +YAPN F+++ V E+YL R+ EL
Sbjct: 1 MDAWPRCLERLEAEFPPEDVHTWLKPLQAEDRGDSIVLYAPNAFIVEQVRERYLPRIREL 60
Query: 63 LGE-RGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPV-QPVSAAPVVV 120
L G G+ ++L +GS+ P AP P P Q V++AP
Sbjct: 61 LAYFAGNGE---VALAVGSR--------------------PRAPEPLPASQAVASAPAAA 97
Query: 121 PREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLN 180
P I P A + + H ++ N
Sbjct: 98 P------------------------IVPFAGNLDS-------------------HYTFAN 114
Query: 181 RTFTFENFVEGKSNQLARAAAWQVADNL-KHGYNPLFLYGGVGLGKTHLMHAVGNHLLKK 239
FVEG+SNQL AAA Q A +NPL LYG GLGKTHLM A GN L +
Sbjct: 115 -------FVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAAGNALRQA 167
Query: 240 NPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFH 299
NP AKV+YL SE+F + M++ALQ A+++FKR ++ +DALLIDDIQFFA K+R+QEEFFH
Sbjct: 168 NPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDRTQEEFFH 227
Query: 300 TFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQ 359
TFNAL +G QQ+ILT DRYP+E+EGLE RLKSR WGL+VA++PP+ ETR AI++ KA +
Sbjct: 228 TFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKARE 287
Query: 360 AKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDK 419
E+P D AF IA+++RSNVR+LEGAL ++A ++F GR IT+E +E+L+DLL Q +
Sbjct: 288 RGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRDLLRAQQQ 347
Query: 420 LVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGR 479
+ I NIQ+TVA+YY +++ DLLSKRR+RS+ARPRQVAMAL+KELT HSLPEIG AF GR
Sbjct: 348 AIGIPNIQKTVADYYGLQMKDLLSKRRTRSLARPRQVAMALAKELTEHSLPEIGDAFAGR 407
Query: 480 DHTTVLHACRKIAQLRESDADIREDYKNLLRTLT 513
DHTTVLHACR+I L E+D +RED++ L+R L+
Sbjct: 408 DHTTVLHACRQIRTLMEADGKLREDWEKLIRKLS 441
>emb|CAE35353.1| (BX640452) chromosomal replication initiator protein [Bordetella
bronchiseptica]
Length = 480
Score = 447 bits (1149), Expect = e-125
Identities = 248/514 (48%), Positives = 332/514 (64%), Gaps = 43/514 (8%)
Query: 4 ELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDE----LRVYAPNRFVLDWVNEKYLGRL 59
E WQ CV L ELP QQ + WIRPL V DE LRV APNRF LDWV + + ++
Sbjct: 3 EFWQTCVSRLEQELPPQQISAWIRPL-VPLAYDEAQAVLRVAAPNRFKLDWVRKNFSHQI 61
Query: 60 LELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVV 119
L E + + L G+ S PR P+
Sbjct: 62 EALAAEWYQRPVQVTFELPGT--SSAPRI----------------------------PMA 91
Query: 120 VPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYL 179
VPR P + P+V + + EP+ P A PA APA + + S L
Sbjct: 92 VPR---PVAVSVPAVVAAVQQASEPA-PPAPAPAPAAPAPA---PASADAANIVYERSRL 144
Query: 180 NRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKK 239
N TFENFV GK+NQLARAAA QVA+N YNPLFLYGGVGLGKTHL+HA+GN ++
Sbjct: 145 NTDLTFENFVTGKANQLARAAALQVAENPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAA 204
Query: 240 NPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFH 299
+V Y+H++++V+D+VKA Q A ++FKR+Y S+D LLIDDIQFF+ K R+QEEFF+
Sbjct: 205 GTGVRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFY 264
Query: 300 TFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQ 359
F A++ +Q+I+TSD YPKE+ G++ RL SRF GLTVA+EPPELE RVAIL++KAE
Sbjct: 265 AFEAMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAES 324
Query: 360 AKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPI-TIELIRESLKDLLALQD 418
+ +P + AFFIA+ +RSNVRELEGAL++V+A++ F GR + T+++ +E+LKDLL++ +
Sbjct: 325 EGVPMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDVCKEALKDLLSVSN 384
Query: 419 KLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGG 478
++++NIQ+TVA++YKIK++D+ SKRR ++A PRQVAM L+KELT SLPEIG FGG
Sbjct: 385 GQITVENIQKTVADFYKIKVADMYSKRRPANIALPRQVAMYLAKELTQKSLPEIGDLFGG 444
Query: 479 RDHTTVLHACRKIAQLRESDADIREDYKNLLRTL 512
RDHTTVLHA RKI+ R A++ L +TL
Sbjct: 445 RDHTTVLHAVRKISDARAKQAELNHTLHVLEQTL 478
>emb|CAE39680.1| (BX640436) chromosomal replication initiator protein [Bordetella
parapertussis]
Length = 469
Score = 441 bits (1134), Expect = e-123
Identities = 249/514 (48%), Positives = 329/514 (64%), Gaps = 54/514 (10%)
Query: 4 ELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDE----LRVYAPNRFVLDWVNEKYLGRL 59
E WQ CV L ELP QQ + WIRPL V DE LRV APNRF LDWV + + ++
Sbjct: 3 EFWQTCVSRLEQELPPQQISAWIRPL-VPLAYDEAQAVLRVAAPNRFKLDWVRKNFSHQI 61
Query: 60 LELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVV 119
L E + + L G T AP P+A P PV
Sbjct: 62 EALAAEWYQRPVQVTFELPG---------------TSSAPRIPMAVP---------RPVA 97
Query: 120 VPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYL 179
V +P V A +S+P P APA N+ E S L
Sbjct: 98 V---SVPAVVAAVQQASEPAPP----------------APASADAANIVYE-----RSRL 133
Query: 180 NRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKK 239
N TFENFV GK+NQLARAAA QVA+N YNPLFLYGGVGLGKTHL+HA+GN ++
Sbjct: 134 NTDLTFENFVTGKANQLARAAALQVAENPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAA 193
Query: 240 NPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFH 299
+V Y+H++++V+D+VKA Q A ++FKR+Y S+D LLIDDIQFF+ K R+QEEFF+
Sbjct: 194 GTGVRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFY 253
Query: 300 TFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQ 359
F A++ +Q+I+TSD YPKE+ G++ RL SRF GLTVA+EPPELE RVAIL++KAE
Sbjct: 254 AFEAMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAES 313
Query: 360 AKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPI-TIELIRESLKDLLALQD 418
+ +P + AFFIA+ +RSNVRELEGAL++V+A++ F GR + T+++ +E+LKDLL++ +
Sbjct: 314 EGVPMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDVCKEALKDLLSVSN 373
Query: 419 KLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGG 478
++++NIQ+TVA++YKIK++D+ SKRR ++A PRQVAM L+KELT SLPEIG FGG
Sbjct: 374 GQITVENIQKTVADFYKIKVADMYSKRRPANIALPRQVAMYLAKELTQKSLPEIGDLFGG 433
Query: 479 RDHTTVLHACRKIAQLRESDADIREDYKNLLRTL 512
RDHTTVLHA RKI+ R A++ L +TL
Sbjct: 434 RDHTTVLHAVRKISDARAKQAELNHTLHVLEQTL 467
>emb|CAE44820.1| (BX640412) chromosomal replication initiator protein [Bordetella
pertussis]
Length = 469
Score = 441 bits (1134), Expect = e-123
Identities = 249/514 (48%), Positives = 329/514 (64%), Gaps = 54/514 (10%)
Query: 4 ELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDE----LRVYAPNRFVLDWVNEKYLGRL 59
E WQ CV L ELP QQ + WIRPL V DE LRV APNRF LDWV + + ++
Sbjct: 3 EFWQTCVSRLEQELPPQQISAWIRPL-VPLAYDEAQAVLRVAAPNRFKLDWVRKNFSHQI 61
Query: 60 LELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVV 119
L E + + L G T AP P+A P PV
Sbjct: 62 EALAAEWYQRPVQVTFELPG---------------TSSAPRIPMAVP---------RPVA 97
Query: 120 VPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYL 179
V +P V A +S+P P APA N+ E S L
Sbjct: 98 V---SVPAVVAAVQQASEPAPP----------------APASADAANIVYE-----RSRL 133
Query: 180 NRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKK 239
N TFENFV GK+NQLARAAA QVA+N YNPLFLYGGVGLGKTHL+HA+GN ++
Sbjct: 134 NTDLTFENFVTGKANQLARAAALQVAENPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAA 193
Query: 240 NPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFH 299
+V Y+H++++V+D+VKA Q A ++FKR+Y S+D LLIDDIQFF+ K R+QEEFF+
Sbjct: 194 GTGVRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFY 253
Query: 300 TFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQ 359
F A++ +Q+I+TSD YPKE+ G++ RL SRF GLTVA+EPPELE RVAIL++KAE
Sbjct: 254 AFEAMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAES 313
Query: 360 AKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPI-TIELIRESLKDLLALQD 418
+ +P + AFFIA+ +RSNVRELEGAL++V+A++ F GR + T+++ +E+LKDLL++ +
Sbjct: 314 EGVPMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDVCKEALKDLLSVSN 373
Query: 419 KLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGG 478
++++NIQ+TVA++YKIK++D+ SKRR ++A PRQVAM L+KELT SLPEIG FGG
Sbjct: 374 GQITVENIQKTVADFYKIKVADMYSKRRPANIALPRQVAMYLAKELTQKSLPEIGDLFGG 433
Query: 479 RDHTTVLHACRKIAQLRESDADIREDYKNLLRTL 512
RDHTTVLHA RKI+ R A++ L +TL
Sbjct: 434 RDHTTVLHAVRKISDARAKQAELNHTLHVLEQTL 467
>emb|CAD83912.1| (BX321856) dnaA; chromosomal replication initiator protein
[Nitrosomonas europaea ATCC 19718]
Length = 459
Score = 432 bits (1112), Expect = e-120
Identities = 221/376 (58%), Positives = 285/376 (75%), Gaps = 2/376 (0%)
Query: 137 DPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLNRTFTFENFVEGKSNQL 196
+P E E ++ A PA E+ V + S LN +FTF+ FV GK+NQL
Sbjct: 84 EPAESEAQTVRTSAQKNREDKKPAA--EKTQGVTSRKTNPSQLNASFTFDAFVTGKANQL 141
Query: 197 ARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVAD 256
ARA A QVA+ YNPLF+YGGVGLGKTHLM A+GN++L+ + AK+ Y+H+E++V+D
Sbjct: 142 ARAGAIQVAERPGIAYNPLFIYGGVGLGKTHLMQAIGNYVLELDAGAKIRYVHAEKYVSD 201
Query: 257 MVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSD 316
+V A Q + ++FK +Y S+D LL+DD+QFF+ K R+QEEFF+ FNAL+E +QVI+TSD
Sbjct: 202 VVSAYQHKSFDKFKLYYHSLDLLLVDDVQFFSGKNRTQEEFFYAFNALIEAHKQVIITSD 261
Query: 317 RYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQAKIELPHDAAFFIAQRI 376
YPKEI GLEERL SRFGWGLTVA+EPPELE RVAIL+KKA KIEL + AFFIA+ I
Sbjct: 262 CYPKEISGLEERLVSRFGWGLTVAIEPPELEMRVAILLKKALAEKIELDENTAFFIAKYI 321
Query: 377 RSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKLVSIDNIQRTVAEYYKI 436
RSNVRELEGALKRV+A S F G I+++L +E+LKDLLA+Q++ +SI+NIQ+TVA+YYKI
Sbjct: 322 RSNVRELEGALKRVLAFSRFTGHSISLDLAKEALKDLLAIQNRQISIENIQKTVADYYKI 381
Query: 437 KISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRDHTTVLHACRKIAQLRE 496
K++D+ SK+R R++ RPRQVAMA++KELT SLP+IG AFGGRDHTTVLHA RKI +LR
Sbjct: 382 KVADMYSKKRVRTIVRPRQVAMAIAKELTQLSLPDIGEAFGGRDHTTVLHAHRKIIELRT 441
Query: 497 SDADIREDYKNLLRTL 512
SD I D+ L+ L
Sbjct: 442 SDPGINRDFNALMHIL 457
Score = 60.1 bits (144), Expect = 3e-08
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 6 WQQCVDLLRDELPSQQFNTWIRPLQVEAEGDE---LRVYAPNRFVLDWVNEKYLGRLLEL 62
W C+ R EL QQFNTWI+PL++E DE L + APNRFVL W+ + ++ R+ E+
Sbjct: 8 WHFCLKHFRQELNGQQFNTWIKPLKLEVCPDEKNTLILIAPNRFVLQWIKDNFVTRIDEM 67
>gb|AAO27909.1| (AE012553) chromosomal replication initiator [Xylella fastidiosa
Temecula1]
Length = 439
Score = 407 bits (1045), Expect = e-112
Identities = 205/355 (57%), Positives = 267/355 (75%), Gaps = 7/355 (1%)
Query: 163 TERNVQVE--GALKHT----SYLNRTFTFENFVEGKSNQLARAAAWQVADNL-KHGYNPL 215
TE V V+ G L T L+ + F+NFVEG+SNQLARAAAWQ A +NPL
Sbjct: 81 TELTVPVDTTGRLSQTVPFNGNLDTHYNFDNFVEGRSNQLARAAAWQAAQKPGDRTHNPL 140
Query: 216 FLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRS 275
LYGG GLGKTHLM A GN + + NP KV+YL SE+F + M++ALQ ++++FKR +
Sbjct: 141 LLYGGTGLGKTHLMFAAGNVMRQVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQ 200
Query: 276 VDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGW 335
+DALLIDDIQFFA K+R+QEEFFHTFNAL +G QQ+ILT DRYP+E+ GLE RLKSR W
Sbjct: 201 IDALLIDDIQFFAGKDRTQEEFFHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAW 260
Query: 336 GLTVAVEPPELETRVAILMKKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSH 395
GL+VA++PP+ ETR AI++ KA + +P + AF IA+++ SNVR+LEGAL ++A ++
Sbjct: 261 GLSVAIDPPDFETRAAIVLAKARERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARAN 320
Query: 396 FMGRPITIELIRESLKDLLALQDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQ 455
F GR +TIE +E+L+DLL Q + + I NIQ+ VA+YY ++I DLLSKRR+RS+ARPRQ
Sbjct: 321 FTGRAVTIEFSQETLRDLLRAQQQTIGIPNIQKIVADYYGLQIKDLLSKRRTRSLARPRQ 380
Query: 456 VAMALSKELTNHSLPEIGVAFGGRDHTTVLHACRKIAQLRESDADIREDYKNLLR 510
+AMAL+KELT HSLPEIG AF GRDHTTVLHACR+I L E++ +RED+ L+R
Sbjct: 381 LAMALAKELTEHSLPEIGDAFAGRDHTTVLHACRQIKLLMETETKLREDWDKLMR 435
Score = 72.0 bits (175), Expect = 8e-12
Identities = 29/61 (47%), Positives = 43/61 (70%)
Query: 3 VELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLLEL 62
+E W +C++ L E P + +TW+RPLQ + GD + +YAPN F+++ V E+YLGRL EL
Sbjct: 1 MESWSRCLERLETEFPPEDVHTWLRPLQADQRGDSVILYAPNTFIIELVEERYLGRLREL 60
Query: 63 L 63
L
Sbjct: 61 L 61
>gb|AAF82814.1|AE003855_1 (AE003855) chromosomal replication initiator [Xylella fastidiosa
9a5c]
Length = 439
Score = 406 bits (1044), Expect = e-112
Identities = 198/333 (59%), Positives = 259/333 (77%), Gaps = 1/333 (0%)
Query: 179 LNRTFTFENFVEGKSNQLARAAAWQVADNL-KHGYNPLFLYGGVGLGKTHLMHAVGNHLL 237
L+ + F+NFVEG+SNQLARAAAWQ A +NPL LYGG GLGKTHLM A GN +
Sbjct: 103 LDTHYNFDNFVEGRSNQLARAAAWQAAQKPGDRTHNPLLLYGGTGLGKTHLMFAAGNVMR 162
Query: 238 KKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEF 297
+ NP KV+YL SE+F + M++ALQ ++++FKR + +DALLIDDIQFFA K+R+QEEF
Sbjct: 163 QVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQIDALLIDDIQFFAGKDRTQEEF 222
Query: 298 FHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKA 357
FHTFNAL +G QQ+ILT DRYP+E+ GLE RLKSR WGL+VA++PP+ ETR AI++ KA
Sbjct: 223 FHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKA 282
Query: 358 EQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQ 417
+ +P + AF IA+++ SNVR+LEGAL ++A ++F GR +TIE +E+L+DLL Q
Sbjct: 283 RERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQETLRDLLRAQ 342
Query: 418 DKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFG 477
+ + I NIQ+ VA+YY ++I DLLSKRR+RS+ARPRQ+AMAL+KELT HSLPEIG AF
Sbjct: 343 QQTIGIPNIQKIVADYYGLQIKDLLSKRRTRSLARPRQLAMALAKELTEHSLPEIGDAFA 402
Query: 478 GRDHTTVLHACRKIAQLRESDADIREDYKNLLR 510
GRDHTTVLHACR+I L E++ +RED+ L+R
Sbjct: 403 GRDHTTVLHACRQIKLLMETETKLREDWDKLMR 435
Score = 71.6 bits (174), Expect = 1e-11
Identities = 29/61 (47%), Positives = 43/61 (70%)
Query: 3 VELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLLEL 62
+E W +C++ L E P + +TW+RPLQ + GD + +YAPN F+++ V E+YLGRL EL
Sbjct: 1 MESWSRCLERLETEFPPEDVHTWLRPLQADQRGDSVVLYAPNPFIIELVEERYLGRLREL 60
Query: 63 L 63
L
Sbjct: 61 L 61
>gb|AAN45205.1|AE015383_5 (AE015383) DNA biosynthesis; initiation of chromosome replication;
can be transcription regulator [Shigella flexneri 2a
str. 301]
Length = 408
Score = 405 bits (1042), Expect = e-112
Identities = 234/423 (55%), Positives = 282/423 (66%), Gaps = 50/423 (11%)
Query: 25 WIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLLELLGERGEGQLPALSLLIGSKR-S 83
WIRPLQ E + L +YAPNRFVLDWV +KYL + LL P L +G+K +
Sbjct: 2 WIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKPVT 61
Query: 84 RTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEE 143
+TP+AA+ ++VA P VA + P APS S
Sbjct: 62 QTPQAAVT---SNVAAPAQVA-------------------QTQPQRAAPSTRSGWDN--- 96
Query: 144 PSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAAWQ 203
+PA A P R+ NV KHT F+NFVEGKSNQLARAAA Q
Sbjct: 97 ---------VPAPAEPTYRSNVNV------KHT--------FDNFVEGKSNQLARAAACQ 133
Query: 204 VADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQL 263
VADN YNPLFLYGG GLGKTHL+HAVGN ++ + PNAKVVY+HSERFV DMVKALQ
Sbjct: 134 VADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQN 193
Query: 264 NAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIE 323
NAI EFKR+YRSVDALLIDDIQFFA K ++ F F + + ++
Sbjct: 194 NAIEEFKRYYRSVDALLIDDIQFFAIKNDLRKSFSTPFTPCWKVSTDHSHLGSLFERD-N 252
Query: 324 GLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQAKIELPHDAAFFIAQRIRSNVREL 383
G+E+RLKSRFGWGLTVA+EPPELETRVAILMKKA++ I LP + AFFIA+R+RSNVREL
Sbjct: 253 GVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVREL 312
Query: 384 EGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKLVSIDNIQRTVAEYYKIKISDLLS 443
EGAL RVIA+++F GR ITI+ +RE+L+DLLALQ+KLV+IDNIQ+TVAEYYKIK++DLLS
Sbjct: 313 EGALNRVIANANFTGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVADLLS 372
Query: 444 KRR 446
KRR
Sbjct: 373 KRR 375
>emb|CAB83845.1| (AL162753) putative chromosomal replication initiator protein
[Neisseria meningitidis Z2491]
Length = 518
Score = 404 bits (1037), Expect = e-112
Identities = 232/523 (44%), Positives = 320/523 (61%), Gaps = 31/523 (5%)
Query: 4 ELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL--- 60
E W C+ L D LP QF WI PL V EG VY N+F + + ++ G++
Sbjct: 5 EFWPLCLRRLHDMLPHGQFAQWIAPLTVGEEGGVWVVYGKNQFACNMLKSQFAGKIEAVR 64
Query: 61 -ELLGER-------GEGQLPALSLLIGSKRSRTPR----AAIVPSQTHVAPPPPVAPPPA 108
EL R GEG ++ + G+ P + +P Q + P P
Sbjct: 65 EELAAGRSAFVFKPGEGVCYEMAAVEGAVEPAEPSLHAGSEEMPVQEVLLDELPSEEPVK 124
Query: 109 PVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPA-VRTERNV 167
P +AA ++ R + + P+EP + + +A+ P AA A RT+
Sbjct: 125 PAASKTAADILAER-----------MRNLPHEPRQAAG---SASRPESAAVAKARTDAQR 170
Query: 168 QVEGALKHTSYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTH 227
E A + L+ +TF+ VEGK N+LA AAA +A++ YNP FLYG GLGKTH
Sbjct: 171 DAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLYGSTGLGKTH 230
Query: 228 LMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFF 287
L+ AVGN LLK P+AKV Y+HS+ ++ +KA++ N + FK+ Y+ D L+IDDIQF
Sbjct: 231 LVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFI 290
Query: 288 ARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELE 347
K+R+ EEFF+ +N +Q+ILT D P +IEG+++RLKSRF WGLT+ +EPPELE
Sbjct: 291 KGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELE 350
Query: 348 TRVAILMKKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRP-ITIELI 406
R+AIL KKAE A I + +AA FIA IRSNVRELEGA RV A S FM RP I I+L
Sbjct: 351 MRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLA 410
Query: 407 RESLKDLLALQDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTN 466
R +L+D++A + K+++ D I VA+YY+IKISD+L K+R+R++ARPRQVAM+L+KELT
Sbjct: 411 RTALQDIIAEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELTT 470
Query: 467 HSLPEIGVAFGGRDHTTVLHACRKIAQLRESDADIREDYKNLL 509
SLP IG +FGGRDHTTV+H R +A+LRE D ++ +DY+ LL
Sbjct: 471 LSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLL 513
>gb|AAF42233.1| (AE002540) chromosomal replication initiator protein DnaA
[Neisseria meningitidis MC58]
Length = 518
Score = 403 bits (1035), Expect = e-111
Identities = 229/514 (44%), Positives = 315/514 (61%), Gaps = 13/514 (2%)
Query: 4 ELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLLELL 63
E W C+ L D LP QF WI PL V EG VY N+F + + ++ G++ +
Sbjct: 5 EFWPLCLRRLHDMLPQGQFAQWIAPLTVGEEGGVWVVYGKNQFACNMLKSQFAGKIEAVR 64
Query: 64 GERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPV------SAAP 117
E G+ + + + R AA+ + P PVQ V S P
Sbjct: 65 EELAAGR--SAFVFKPGEGVRYEMAAVEGAVEPAEPSLHAVSEGMPVQEVLLDELPSEEP 122
Query: 118 VVVPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPA-VRTERNVQVEGALKHT 176
V + A + + P+EP + + +A+ P A A RT+ E A
Sbjct: 123 VKPAASKTAADILAERMKNLPHEPRQAAG---SASRPESVAVAKARTDVQRDAEEARYEQ 179
Query: 177 SYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHL 236
+ L+ +TF+ VEGK N+LA AAA +A++ YNP FLYG GLGKTHL+ AVGN L
Sbjct: 180 TNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLYGSTGLGKTHLVQAVGNEL 239
Query: 237 LKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEE 296
LK P+AKV Y+HS+ ++ +KA++ N + FK+ Y+ D L+IDDIQF K+R+ EE
Sbjct: 240 LKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEE 299
Query: 297 FFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKK 356
FF+ +N +Q+ILT D P +IEG+++RLKSRF WGLT+ +EPPELE R+AIL KK
Sbjct: 300 FFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAILQKK 359
Query: 357 AEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRP-ITIELIRESLKDLLA 415
AE A I + +AA FIA IRSNVRELEGA RV A S FM RP I I+L R +L+D++A
Sbjct: 360 AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLARTALQDIIA 419
Query: 416 LQDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVA 475
+ K+++ D I VA+YY+IKISD+L K+R+R++ARPRQVAM+L+KELT SLP IG +
Sbjct: 420 EKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELTTLSLPSIGDS 479
Query: 476 FGGRDHTTVLHACRKIAQLRESDADIREDYKNLL 509
FGGRDHTTV+H R +A+LRE D ++ +DY+ LL
Sbjct: 480 FGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLL 513
>gb|AAP07111.1| (AE016998) Chromosomal replication initiator protein dnaA [Bacillus
cereus ATCC 14579]
Length = 446
Score = 359 bits (922), Expect = 2e-98
Identities = 200/507 (39%), Positives = 297/507 (58%), Gaps = 73/507 (14%)
Query: 4 ELWQQCVDLLRDELPSQQFNTWIRPLQVE-AEGDELRVYAPNRFVLDWVNEKYLGRLLEL 62
+LW + L ++ + TW++ + D L + APN F DW+ Y + E
Sbjct: 6 DLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELISET 65
Query: 63 LGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPR 122
L + +L A+ +I P S A +
Sbjct: 66 LYDLTGAKL-AIRFII---------------------------------PQSQAEEDI-- 89
Query: 123 EELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLNRT 182
+LPPV P+ + P+ S LN
Sbjct: 90 -DLPPVKPNPAQDDSAHLPQ----------------------------------SMLNPK 114
Query: 183 FTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPN 242
+TF+ FV G N+ A AA+ VA+ YNPLF+YGGVGLGKTHLMHA+G+++++ NPN
Sbjct: 115 YTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPN 174
Query: 243 AKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFN 302
AKVVYL SE+F + + +++ N +F+ YR+VD LLIDDIQF A KE++QEEFFHTFN
Sbjct: 175 AKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFN 234
Query: 303 ALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQAKI 362
AL E +Q++++SDR PKEI LE+RL+SRF WGL + PP+LETR+AIL KKA+ +
Sbjct: 235 ALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGL 294
Query: 363 ELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLA-LQDKLV 421
++P++ +IA +I SN+RELEGAL RV+A+S + + I +L E+LKD++ + K++
Sbjct: 295 DIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKDIIPNSKPKII 354
Query: 422 SIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRDH 481
SI +IQ+ V + Y++K+ D +K+R++SVA PRQ+AM LS+ELT+ SLP+IG FGGRDH
Sbjct: 355 SIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRELTDSSLPKIGEEFGGRDH 414
Query: 482 TTVLHACRKIAQLRESDADIREDYKNL 508
TTV+HA KI++L ++D +++ + +
Sbjct: 415 TTVIHAHEKISKLLKTDTQLQKQVEEI 441
>dbj|BAB79707.1| (AP003185) chromosomal replication initiator protein [Clostridium
perfringens str. 13]
Length = 457
Score = 359 bits (922), Expect = 2e-98
Identities = 178/357 (49%), Positives = 263/357 (73%), Gaps = 5/357 (1%)
Query: 162 RTERNVQVEGAL----KHTSYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFL 217
+ E V+G++ + ++ LN +TF++FV G SN+ A AA+ VA++ YNPLF+
Sbjct: 99 KKENTNDVDGSIVVSDEMSATLNPKYTFQSFVIGNSNRFAHAASLAVAESPAKAYNPLFI 158
Query: 218 YGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVD 277
YGGVGLGKTHLMHA+G+++L++NP AKVVY+ SE+F +++ A++ + EF+ YR VD
Sbjct: 159 YGGVGLGKTHLMHAIGHYILQENPKAKVVYVSSEKFTNELINAIKDDKNEEFRNKYRKVD 218
Query: 278 ALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGL 337
LLIDDIQF A KER+QEEFFHTFNAL E +Q+IL+SDR PKEI LE+RL+SRF WGL
Sbjct: 219 VLLIDDIQFIAGKERTQEEFFHTFNALHEENKQIILSSDRPPKEIPTLEDRLRSRFEWGL 278
Query: 338 TVAVEPPELETRVAILMKKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFM 397
++PP+ ETR+AIL KKA+ + +P++ +IA +I+SN+RELEGAL R+IA+S
Sbjct: 279 IADIQPPDFETRMAILKKKADVEGLNVPNEVMVYIATKIKSNIRELEGALIRIIAYSSLT 338
Query: 398 GRPITIELIRESLKDLLALQDKL-VSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQV 456
R ++++L E+LKD+++ ++ V++ IQ +VA YY ++I DL S+RR+R++A PRQ+
Sbjct: 339 NRDVSVDLASEALKDIISNKESAPVTVKTIQESVANYYNLRIEDLKSQRRTRNIAYPRQI 398
Query: 457 AMALSKELTNHSLPEIGVAFGGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTLT 513
AM LS++LT+ SLP+IG FGGRDHTTV+HA KI++ ++D ++ ++ + LT
Sbjct: 399 AMYLSRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISENLKTDEGLQSMINDITKKLT 455
>gb|AAO03598.1|AE016744_1 (AE016744) chromosomal replication initiator protein
[Staphylococcus epidermidis ATCC 12228]
Length = 451
Score = 355 bits (911), Expect = 4e-97
Identities = 174/349 (49%), Positives = 250/349 (71%), Gaps = 10/349 (2%)
Query: 170 EGALKHTSYLNRTF---------TFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGG 220
E ++H+S ++T+ TF+ FV G N+ AA+ VA+ YNPLF+YGG
Sbjct: 96 EPQVQHSSIDDKTWGKEQFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGG 155
Query: 221 VGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALL 280
VGLGKTHLMHA+G+H+L PNAKV+Y SE+F + +K+++ N F+ YR +D LL
Sbjct: 156 VGLGKTHLMHAIGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLL 215
Query: 281 IDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVA 340
IDDIQF KE++QEEFFHTFN L + +Q++++SDR PKEI LE+RL+SRF WGL V
Sbjct: 216 IDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVD 275
Query: 341 VEPPELETRVAILMKKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRP 400
+ PP+ ETR+AIL KK E+ +++P +A +IA +I+SN+RELEGAL R++A+S G+P
Sbjct: 276 ITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKP 335
Query: 401 ITIELIRESLKDLL-ALQDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMA 459
IT EL E+LKD++ + + K ++I +IQ+ V +YY ++I D +K+R++S+A PRQ+AM
Sbjct: 336 ITTELTAEALKDIIQSPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMY 395
Query: 460 LSKELTNHSLPEIGVAFGGRDHTTVLHACRKIAQLRESDADIREDYKNL 508
LS+ELT+ SLP+IG FGGRDHTTV+HA KIA +SD +++ +NL
Sbjct: 396 LSRELTDFSLPKIGEEFGGRDHTTVIHAHEKIANDIKSDPTFKQEVENL 444
>gb|AAO26756.1| (AE014016) chromosomal replication initiator protein DnaA [Buchnera
aphidicola str. Bp (Baizongia pistaciae)]
Length = 457
Score = 354 bits (909), Expect = 6e-97
Identities = 174/341 (51%), Positives = 254/341 (74%), Gaps = 1/341 (0%)
Query: 175 HTSYLNRTFTFENFVEGKSNQLARAAAWQVADNL-KHGYNPLFLYGGVGLGKTHLMHAVG 233
++S +N +TF+NF +G+SNQLA +++A N K+ +NPLFLYG GLGKTHL+HAV
Sbjct: 117 YSSEINTNYTFQNFTKGQSNQLAFKTIYKIAHNPGKNYFNPLFLYGKSGLGKTHLLHAVA 176
Query: 234 NHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERS 293
N +LK K++Y++SE F+ +M+ +L+ N I EFK++YRSV+ LLIDDIQFFA K+ S
Sbjct: 177 NTILKYKNTIKIIYINSENFIQNMITSLKNNTIEEFKKYYRSVNTLLIDDIQFFAYKKHS 236
Query: 294 QEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL 353
QEE FHT NALL QQ+I+TSD++P++I G+E RLKSRF GLT+ ++PP+L TR IL
Sbjct: 237 QEELFHTINALLNRNQQIIITSDQFPQKIHGIETRLKSRFECGLTIRIDPPDLNTRTKIL 296
Query: 354 MKKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDL 413
+KK+ I L + AFFIA+ ++SN+RELEGAL +++A+S + ITI ++L++L
Sbjct: 297 IKKSHIYDINLSYKVAFFIAKNLKSNIRELEGALNKILANSDSKKKIITINFAYKTLQEL 356
Query: 414 LALQDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIG 473
+L K ++I NIQ+ V+ YY I I +LLS+ R +S+ +PRQ+AMA+SK+LTN SL EIG
Sbjct: 357 FSLPKKSITIKNIQKVVSNYYHITIINLLSQCRLKSIVKPRQIAMAISKKLTNKSLSEIG 416
Query: 474 VAFGGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTLTT 514
F GR+H TVL+AC+KI +L+E + +I++D+ LL+ L++
Sbjct: 417 REFNGRNHATVLYACKKIKKLQEKNNNIKKDFLTLLKILSS 457
Score = 59.3 bits (142), Expect = 6e-08
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 1 MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLL 60
MS +W++C+ L+++L +F+ WIRPL+ E + + L +YAPN F +W+ + Y+ L
Sbjct: 1 MSPSIWEKCLKYLQNKLSPIEFSMWIRPLKAEFKKNILILYAPNEFSFNWIKDNYIENLK 60
Query: 61 ELL 63
+LL
Sbjct: 61 KLL 63
>gb|AAP24059.1| (AE017024) chromosomal replication initiator protein DnaA [Bacillus
anthracis str. Ames]
Length = 446
Score = 354 bits (908), Expect = 8e-97
Identities = 172/333 (51%), Positives = 249/333 (74%), Gaps = 1/333 (0%)
Query: 177 SYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHL 236
S LN +TF+ FV G N+ A AA+ VA+ YNPLF+YGGVGLGKTHLMHA+G+++
Sbjct: 109 SMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYV 168
Query: 237 LKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEE 296
++ NPNAKVVYL SE+F + + +++ N +F+ YR+VD LLIDDIQF A KE++QEE
Sbjct: 169 IEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEE 228
Query: 297 FFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKK 356
FFHTFNAL E +Q++++SDR PKEI LE+RL+SRF WGL + PP+LETR+AIL KK
Sbjct: 229 FFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKK 288
Query: 357 AEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLA- 415
A+ +++P++ +IA +I SN+RELEGAL RV+A+S + + I +L E+LKD++
Sbjct: 289 AKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKDIIPN 348
Query: 416 LQDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVA 475
+ K++SI +IQ+ V + Y++K+ D +K+R++SVA PRQ+AM LS+ELT+ SLP+IG
Sbjct: 349 SKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRELTDSSLPKIGEE 408
Query: 476 FGGRDHTTVLHACRKIAQLRESDADIREDYKNL 508
FGGRDHTTV+HA KI++L ++D +++ + +
Sbjct: 409 FGGRDHTTVIHAHEKISKLLKTDTQLQKQVEEI 441
Database: gbbct
Posted date: Sep 29, 2003 6:22 PM
Number of letters in database: 35,829,034
Number of sequences in database: 119,422
Database: /blastdb/gbbct/gbbct2.aso
Posted date: Sep 29, 2003 6:23 PM
Number of letters in database: 46,604,961
Number of sequences in database: 153,703
Database: /blastdb/gbbct/gbbct3.aso
Posted date: Sep 29, 2003 6:24 PM
Number of letters in database: 37,964,456
Number of sequences in database: 126,043
Database: /blastdb/gbbct/gbbct4.aso
Posted date: Sep 29, 2003 6:29 PM
Number of letters in database: 44,801,584
Number of sequences in database: 150,186
Database: /blastdb/gbbct/gbbct5.aso
Posted date: Sep 29, 2003 6:29 PM
Number of letters in database: 3,182,186
Number of sequences in database: 10,611
Lambda K H
0.319 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,120,020
Number of Sequences: 559965
Number of extensions: 7311885
Number of successful extensions: 45725
Number of sequences better than 1.0e-02: 100
Number of HSP's better than 0.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 43815
Number of HSP's gapped (non-prelim): 804
length of query: 514
length of database: 168,382,221
effective HSP length: 121
effective length of query: 393
effective length of database: 100,626,456
effective search space: 39546197208
effective search space used: 39546197208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 97 (42.0 bits)