Score E
Sequences producing significant alignments: (bits) Value
gb|AAG03397.1|AE004440_7 (AE004440) hypothetical protein [P... 1141 0.0
gb|AAG05329.1|AE004620_8 (AE004620) hypothetical protein [P... 189 3e-47
gb|AAG05465.1|AE004635_3 (AE004635) hypothetical protein [P... 185 8e-46
gb|AAB91705.1| (AE000078) Y4iJ [Rhizobium sp. NGR234] 180 2e-44
dbj|BAC53003.1| (AP005963) blr7738 [Bradyrhizobium japonicu... 162 4e-39
dbj|BAC45286.1| (AP005935) bll0021 [Bradyrhizobium japonicu... 154 2e-36
gb|AAG05466.1|AE004635_4 (AE004635) hypothetical protein [P... 119 7e-26
gb|AAG60867.1|AF322012_172 (AF322013) ID385 [Bradyrhizobium... 79 8e-14
emb|CAD18319.1| (AL646083) HYPOTHETICAL TRANSMEMBRANE PROTE... 72 7e-12
emb|CAD78304.1| (BX294141) conserved hypothetical protein [... 71 2e-11
gb|AAB91708.1| (AE000078) Y4iM [Rhizobium sp. NGR234] 70 5e-11
gb|AAP41848.1| (AY230855) 70 kDa protein [Xanthomonas sp. 35Y] 49 6e-05
gb|AAN47865.1|AE011253_2 (AE011253) Methylamine utilization... 43 0.005
dbj|BAC47149.1| (AP005941) bsl1884 [Bradyrhizobium japonicu... 43 0.006
>gb|AAG03397.1|AE004440_7 (AE004440) hypothetical protein [Pseudomonas aeruginosa PAO1]
Length = 568
Score = 1141 bits (2951), Expect = 0.0
Identities = 562/568 (98%), Positives = 564/568 (99%)
Query: 1 MKRLKKTLHLSSLSLVSLALSSAALAAAPVMLDQGKEWTESHRQDFYSRDQGSQVMPLPW 60
MKRLKKTLHLSSLSL SLALSSAALAAAPVMLDQGKEWTESHRQDFYSRDQGSQVMPLPW
Sbjct: 1 MKRLKKTLHLSSLSLASLALSSAALAAAPVMLDQGKEWTESHRQDFYSRDQGSQVMPLPW 60
Query: 61 LKALRQPDGTPFLADSLARYGYLPNPKAPAEGLPVGFTVAGTGARQMVGMTCSACHTRQI 120
LKALRQPDGTPFLADSLARYGYLPNPKAPAEGLPVGFTVAGTGARQMVGMTCSACHTRQI
Sbjct: 61 LKALRQPDGTPFLADSLARYGYLPNPKAPAEGLPVGFTVAGTGARQMVGMTCSACHTRQI 120
Query: 121 EVKGTAYRIDGGPAIVDFQAFLADLDRAVGPLTSDDAAFDAFAKQILGANPPPGARDALL 180
EVKGTAYRIDGGPAIVDFQAFLADLDRAVGPLTSDDAAFDAFAK ILGANPPPGARDALL
Sbjct: 121 EVKGTAYRIDGGPAIVDFQAFLADLDRAVGPLTSDDAAFDAFAKPILGANPPPGARDALL 180
Query: 181 AAVKEWYEPYHTLIERALPKDTWGPARLDAVSMIFNRLTGLDIGTAPPYLIPDNIKAADA 240
AAVKEWYEPYHTLIERALPKDTWGPARLDAVSMIFNRLTGLDIGTAPPYLIPDNIKAADA
Sbjct: 181 AAVKEWYEPYHTLIERALPKDTWGPARLDAVSMIFNRLTGLDIGTAPPYLIPDNIKAADA 240
Query: 241 PVRYPFLWNAARQNKTQWPGFAANGNDLLGLARNVGEVYGVFATFHPQKSKFHLLGMDYL 300
PVRYPFLWNAARQNKTQWPGFAANGNDLLGLARNVGEVYGVFATFHPQKSKFHLLGMDYL
Sbjct: 241 PVRYPFLWNAARQNKTQWPGFAANGNDLLGLARNVGEVYGVFATFHPQKSKFHLLGMDYL 300
Query: 301 KVNSANFHGLGKLEELIKKIGPPKWPWAVDKHLARKGALIFARKTDEGGCVECHGIRIKD 360
K+NSANFHGLGKLE+LIKKIGPPKWPWAVDKHLARKGALIFARKTDEGGCVECHGIRIKD
Sbjct: 301 KINSANFHGLGKLEDLIKKIGPPKWPWAVDKHLARKGALIFARKTDEGGCVECHGIRIKD 360
Query: 361 LVLWDTPLRDVGSDSRQHAILDGQVQTGVMEGARMPFGQPLKATDEAFDVLAVAVAGSIL 420
LVLWDTPLRDVGSDSRQHAILDGQVQTGVMEGARMPFGQPLKATD AFDVLAVAVAGSIL
Sbjct: 361 LVLWDTPLRDVGSDSRQHAILDGQVQTGVMEGARMPFGQPLKATDGAFDVLAVAVAGSIL 420
Query: 421 QHFVPILGEKHDAKAAAVKPESVMTDETRQLLTAFQKPVRTQADPYPYESRVLQGIWAAA 480
QHFVPILGEKHDAKAAAVKPESVMTDETRQLLTAFQKPVRTQADPYPYESRVLQGIWAAA
Sbjct: 421 QHFVPILGEKHDAKAAAVKPESVMTDETRQLLTAFQKPVRTQADPYPYESRVLQGIWAAA 480
Query: 481 PYLHNGSVPTLEELLKPAAERVESFPVGSAYDVDKVGLAAQQTQFGSYVLKTTGCEQRAS 540
PYLHNGSVPTLEELLKPAAERVESFPVGSAYDVDKVGLAAQQTQFGSYVLKTTGCEQR S
Sbjct: 481 PYLHNGSVPTLEELLKPAAERVESFPVGSAYDVDKVGLAAQQTQFGSYVLKTTGCEQRDS 540
Query: 541 GNSRCGHEYGTSLSAEEKRALLEYLKVL 568
GNSRCGHEYGTSLSAEEKRALLEYLKVL
Sbjct: 541 GNSRCGHEYGTSLSAEEKRALLEYLKVL 568
>gb|AAG05329.1|AE004620_8 (AE004620) hypothetical protein [Pseudomonas aeruginosa PAO1]
Length = 631
Score = 189 bits (481), Expect = 3e-47
Identities = 177/588 (30%), Positives = 263/588 (44%), Gaps = 90/588 (15%)
Query: 37 EWTESHRQDFYSRDQGSQVMPL--PWLKALRQP-DGTPFLA-DSLARYGYLPNPKAPAE- 91
+W + RQ FY QG+ V L W AL P PF A + LAR+G+L +P+ A
Sbjct: 45 QWQDEARQRFYYTPQGTLVKGLHYDWFTALELPFSEEPFAAPEYLARFGFLVDPQQKASD 104
Query: 92 ----GLPVGFTV---AGTGARQMVGMTCSACHTRQIEVKGTAYRIDGGPAIVDFQAFLAD 144
LPVGF+ TG R + +TC+ACHT ++ +G + RIDGG A+ A +
Sbjct: 105 LNPGNLPVGFSQHRDEKTGTRYL-DITCAACHTGELRYQGKSLRIDGGAAMHSIAATVPT 163
Query: 145 L-----DRAVGPLTS----DDAAFDAFAKQILGAN---PPPGARDALLAAVKEWYEPYHT 192
L +A+G + + F+ FA+++LG R A +
Sbjct: 164 LRGGAFGQALGASMAATYYNPFKFNRFARKVLGERYEQDKSQLRADFKAVLDTLLRTAWN 223
Query: 193 LIERALPKDTWGPARLDAVSMIFNRLTGLDIGTAPPYLIPDNIKAADAPVRYPFLWNAAR 252
R L GP R DA I N + G I P N + A+APV YP +W+ +
Sbjct: 224 DTRRHLYPTEEGPGRTDAFGRIANSVFGDAID-------PSNYRVANAPVSYPQVWDIWK 276
Query: 253 QNKTQWPGFAANGNDLLGLARNVGEVYGVFATFHPQKSKFHLLGMDYLKVNSANFHGLGK 312
+ QW NG+ + +ARN+GE GV A L + +S H L
Sbjct: 277 FDWVQW-----NGSAMQPMARNIGEALGVGARLQIFDEHGQPLRGEQRYASSVRLHDLHA 331
Query: 313 LEELIKKIGPPKWP----WAVDKHLARKGALIFARKTDEGGCVECHGIRIK--------- 359
LEE ++++ PP WP +D A +G +F E C CH +++
Sbjct: 332 LEETLQQLKPPTWPEDLFGRIDLQRASQGRALF-----EANCAFCHAPKVQPAEYAAPGR 386
Query: 360 --DLVLWDTPLRDVGSDSR------QHAILDGQVQTGVMEGARMPFGQPLKATDEAFDVL 411
+ + P +G+D H ++ V E ARM Q + A + D+
Sbjct: 387 NPEWRMHMVPTEVIGTDPTTADNIADHRYDLRKLGWSVDELARMNV-QLIGADPQQLDLS 445
Query: 412 AVAVAGSILQHFVPILGEKHDAKAAAVKPESVMTDETRQLLTAFQKPVRTQADPYPYESR 471
++ A + ++ E+ + A + PE T + F P+ Q + Y++R
Sbjct: 446 QLSSAKGLA--YITAFVEQRAYRDAGIPPEQQKT------MNGFDLPIGVQ-ELRAYKAR 496
Query: 472 VLQGIWAAAPYLHNGSVPTLEELLKPAAERVESFPVGS-AYDVDKVGLAAQQTQFGSYVL 530
L G+WA P+LHNGSVP L +LL PAAER F VG+ +D VG ++ G ++L
Sbjct: 497 PLDGVWATPPFLHNGSVPNLFQLLSPAAERSPQFYVGTFEFDPKFVGFRTEKFP-GGFLL 555
Query: 531 KTTGCEQRASGNSRCGHEY----------GTSLSAEEKRALLEYLKVL 568
T R +GN GHE+ G +LS EE+ AL+EYLKVL
Sbjct: 556 DT-----RLTGNRNSGHEFRDGCRQNGVIGRALSPEERWALVEYLKVL 598
>gb|AAG05465.1|AE004635_3 (AE004635) hypothetical protein [Pseudomonas aeruginosa PAO1]
Length = 634
Score = 185 bits (469), Expect = 8e-46
Identities = 195/660 (29%), Positives = 288/660 (43%), Gaps = 129/660 (19%)
Query: 10 LSSLSLVSLALSSAALAAAP---VMLDQGKEWTESHRQDFYSRDQGSQVMPLPWLKALRQ 66
LS LSL L++ + A A A V LDQG W ++ + + QGS+++PL WL AL Q
Sbjct: 3 LSRLSLAILSVLAGAPAFADDSGVDLDQG--WNQTQKTAWLEAGQGSRMLPLAWLVALEQ 60
Query: 67 -PDGTPFLADSLAR-YGYLPNPKAPAEGLPV-GFTV----------------AGTGARQ- 106
P ++D+L R YGY+P+ + V G+ V A G+R+
Sbjct: 61 RASEEPLMSDALIRQYGYVPHTLGGSSVKVVQGYAVDRSDDSDLTFTKLRWKALQGSREP 120
Query: 107 MVGMTCSACHTRQIEVKGTAYRIDGGPAIVDFQAFLADLDRAVGPLTSDDAAFDAFAKQI 166
VG TCS CHT I +GT + GG + D F ++ A+ +D A F+ FA+++
Sbjct: 121 WVGPTCSMCHTSHISYQGTQLTVYGGQTMGDLAGFQLEILGALQSTRADTAKFERFARKV 180
Query: 167 LGANP-PPGARDA----LLAAVKEWYEPYHTLIERALPKD-TWGPARLDAVSMIFNRLTG 220
LGA+ G DA L AA+ LP D +GP RLDA+ IFN + G
Sbjct: 181 LGADGLVSGYNDANKARLQAALDATIVRLRDGSHFNLPHDPEFGPGRLDAIGSIFNSV-G 239
Query: 221 LDIGTAPPYLIPDNIKAADAPVRYPFLWNAARQNKTQWPGFAAN----------GNDLLG 270
++ + A DAPV YPFLWN + ++ QW GF N D+
Sbjct: 240 YEL-----HADEQIYGAEDAPVSYPFLWNVPQLDRVQWTGFNPNHINVVDIDNRKFDVGA 294
Query: 271 LARNVGEVYGVFA---TFHPQKSKFHLLGMDYLKVNSANFHGLGKLEELIKKIGPPKWP- 326
LARN GE GVFA P +S H+ Y +S N L ++E+ + ++ PP WP
Sbjct: 295 LARNAGEAVGVFADVKVLSPIQSALHI---GY--PSSINVDNLIRIEDQLGQLKPPAWPN 349
Query: 327 ---WAVDKHLARKGALIFARKTDEGGCVECH-GIRIKDLVLWDTPLRDV----------- 371
A + +G ++ + C CH + DL TP++ V
Sbjct: 350 QLFGAPEPTRVAEGRELYRQH-----CSSCHTPLDRNDL---RTPVKTVLTHLQARGEVA 401
Query: 372 --GSDSRQHAILDGQVQTG----------VMEGARMPFGQPLKATDEAFDVLAVAVAG-- 417
G+D Q++TG V G R +G+ A D +V+ A+A
Sbjct: 402 PIGTDPWTACNSIAQLKTGYVRGKPYLSFVGTGQRGFYGKQAYAVDVLQEVVVQALAARG 461
Query: 418 -------------SILQHFVPIL--------------GEKHDAKAAAVKPESVMTDETRQ 450
I +P L DA A + E+V D +
Sbjct: 462 LSVALGAFQTAALGIFDGQLPPLISPVPDSPDADSAEATAADAPGALLLAENVAADSDK- 520
Query: 451 LLTAFQKPVRTQADPYPYESRVLQGIWAAAPYLHNGSVPTLEELLKPAAERVESFPVGSA 510
++ + +D Y++R L GIWA+ PYLHNGSV TL +LL P R +F GS
Sbjct: 521 -ARRLEQCLAMTSDLMAYKARPLNGIWASPPYLHNGSVATLYDLLLPPDLRPRTFYTGSV 579
Query: 511 -YDVDKVGLAAQQTQFGSYVLKTTGCEQRASGNSRCGHEYGTS-LSAEEKRALLEYLKVL 568
+D VG ++ + GN+ GH+YG + + +++RAL+EY+K L
Sbjct: 580 EFDPVNVGYITDAGGANRFLF-----DSGKPGNANGGHDYGNAQFNEQQRRALVEYMKTL 634
>gb|AAB91705.1| (AE000078) Y4iJ [Rhizobium sp. NGR234]
Length = 596
Score = 180 bits (456), Expect = 2e-44
Identities = 173/596 (29%), Positives = 260/596 (43%), Gaps = 109/596 (18%)
Query: 36 KEWTESHRQDFYSRDQGSQV--MPLPWLKALRQPD-----GTPFLA-DSLARYGYLPNPK 87
+ W++S R + DQG+ MP WL AL QP G PFL+ D L R+G++
Sbjct: 47 QNWSQSQRGWMHHADQGTVTFSMPYEWLAALEQPTFTLTAGPPFLSSDYLDRFGFIT--- 103
Query: 88 APAEGLPVGFTVAG---------------TGAR-QMVGMTCSACHTRQIEVKGTAYRIDG 131
A + GLPVGF G TG VG+TC+ACHT + KGTA +DG
Sbjct: 104 ADSSGLPVGFAHGGDLVDPKTAQPWVNPATGKPLTTVGLTCAACHTGRFTYKGTAVMVDG 163
Query: 132 GPAIVDFQAFLADLDRAVGPLTSDDAAFDAFAKQILGANPPPGAR-------DALLAAVK 184
GPA+ D F A+ FD FA +LG AR D +LA +
Sbjct: 164 GPALTDLGKFRKASGLALFFTRYAPFRFDRFATAVLGPQADEKARAVLKKQLDKVLAGGR 223
Query: 185 EWYEPYHTLIERALPKDTWGPARLDAVSMIFNRLTGLDIGTAPPYLIPDNIKAADAPVRY 244
+ + E+++ + G RLDA++ I N++ LD+ P+N A APV +
Sbjct: 224 IEVDLDKKVAEKSIEE---GFGRLDALNRIGNQVFSLDLER------PENYVAQSAPVAF 274
Query: 245 PFLWNAARQNKTQWPGFAANGNDLLGLARNVGEVYGVFATFHPQKSKFHLLGMDYLKVNS 304
P +W+ + + Q+ N + + + RN GE GV A + KS+ L +KV++
Sbjct: 275 PHIWDTSWFDWVQY-----NASIMQPMVRNAGEALGVRAFINLTKSEQPLFA-STVKVDT 328
Query: 305 ---ANFHGLGK---LEELIKKIGPPKWP----WAVDKHLARKGALIFARKTDEGGCVECH 354
GK E + PP+WP ++D LA +GA ++A + C CH
Sbjct: 329 IFEIEQQLAGKQPTAENGFTGLRPPRWPSNLFGSIDTKLATEGAAVYADR-----CQGCH 383
Query: 355 GIRIKDLVLWD----TPLRDVGSDSRQHAILD--------GQVQTGVMEGARMPFGQPLK 402
+ W+ T G + I++ Q Q+ ++P +
Sbjct: 384 LPPVGSEGFWEQKHWTNENSAGERYLRVPIINVENIGTDPAQAQSMAERKVKLPSELGID 443
Query: 403 ATDEAFDVLAVAVAGSILQHFVPILGEKHDAKAAAVKPESVMTDETRQLLTAFQKPVRTQ 462
TD L VA + + + + + +M + + A
Sbjct: 444 -TDSFGSALGALVAKTAARWY------DNQTPPVPAEQREIMNGNRQNGIQA-------- 488
Query: 463 ADPYPYESRVLQGIWAAAPYLHNGSVPTLEELLKPAAERVESFPVGS-AYDVDKVGLAAQ 521
P Y++R L GIWA P+LHNGSVPT++ LL PA ER ++F +G+ YD DK+G
Sbjct: 489 --PLAYKARPLDGIWATPPFLHNGSVPTIDALLSPAGERPKTFWLGNREYDPDKLGYLTD 546
Query: 522 QTQFGSYVLKTTGCEQRASGNSRCGHEY---------GTSLSAEEKRALLEYLKVL 568
+ + G + T GNS GHE+ G +L +EK AL+ YLK L
Sbjct: 547 ELK-GGFKFDTA-----KPGNSNAGHEFSDTPGPGVIGPALKPDEKAALIAYLKTL 596
>dbj|BAC53003.1| (AP005963) blr7738 [Bradyrhizobium japonicum USDA 110]
Length = 932
Score = 162 bits (411), Expect = 4e-39
Identities = 183/671 (27%), Positives = 268/671 (39%), Gaps = 161/671 (23%)
Query: 36 KEWTESHRQDFYSRDQGSQVMPLP--WLKALRQPDGTPF-----LADS--LARYGYLPNP 86
+ W+ R F+ QG+ P+P W AL QP F + DS L R+G++ +P
Sbjct: 285 QNWSLEDRHWFHHTSQGTATFPVPYTWFMALEQPRLRLFSRPGMVKDSAYLERFGFIQSP 344
Query: 87 KA------------------------------PAE---GLPVGFTVA------GTGARQ- 106
++ P E GLPVGF TG R+
Sbjct: 345 QSIKTDATTLRSFGYANVYDTTQPKSLSTDWSPVENVDGLPVGFARMTGVVDPATGRREE 404
Query: 107 -MVGMTCSACHTRQIEVKGTAYRIDGGPAIVDFQAFLADLDRAVGPLTSDDAAFDAFAKQ 165
+G+TC+ACHT + KG R DGGPA+ D + + ++ F FA +
Sbjct: 405 DKIGLTCAACHTGHVRYKGVDVRFDGGPAMTDLKKLESVTGLSIAYTLYVPFRFKRFADR 464
Query: 166 ILGANPPPGARDALLAAVK-------EWYEPYHTLIERALPKDTW----------GPARL 208
+LG + R+AL ++K +W + Y I K TW G RL
Sbjct: 465 VLGPDASDADRNALKQSLKATLTFLLDWQKGYDKTI---AGKKTWDGKQQKDTEEGFGRL 521
Query: 209 DAVSMIFNRLTGLDIGTAPPYLIPDNIKAADAPVRYPFLWNAARQNKTQWPGFAANGNDL 268
DA++ I N++ D + N+ A DAPV +P +W W FA +
Sbjct: 522 DALNRIGNQVFSQDFALSGVKGFEKNLHAQDAPVSFPPIWT------VPWLKFAQYDASI 575
Query: 269 -LGLARNVGEVYGVFATFHPQKSKFHLLGMDYLKVNSANFHGLGKLEELI--------KK 319
L RN GE GV A + + D L +SA+ L +E L+ KK
Sbjct: 576 EQPLIRNAGEALGVTALLNLSDA----YPKDRLYRSSADVTNLHWIESLLAGPDPYAQKK 631
Query: 320 IG---PPKWP-------WAVDKHLARKGALIFARKTDEGGCVECHGIRIKDLVL-WDTPL 368
+G P+WP W ++ + G ++A+ CVECH + D + P
Sbjct: 632 LGGLTSPRWPSQILGDDWKINPDRVKSGRKLYAKI-----CVECHLGPVNDPEFDKEFPQ 686
Query: 369 RDVGSDSRQHAILDGQVQTGVMEGARMPFGQPLKATDEAFDVLAVAVAGSILQHFVPILG 428
V S SR I D V + + +A + V+V G + + ILG
Sbjct: 687 ESVWSSSRWERIGDEMVLNPIQKSVTGMGTDSAQA--RVLEKRTVSVPGFLDLNPTRILG 744
Query: 429 EKHDAKAAAVKPESVMTD-------------ETRQLLTAFQKPVRTQ------------- 462
D PE+ T+ +R+ + Q P Q
Sbjct: 745 ---DQWKCTNLPETTSTEMPYSVGLMAIVDIVSRKAMNDAQIPPDAQKRWWGARANCPNP 801
Query: 463 -------ADPYP-YESRVLQGIWAAAPYLHNGSVPTLEELLKPAAERVESFPVGSA-YDV 513
+P P Y +R L G+WA APYLHNGSVP+L+ +L+PAAER + F +G YD
Sbjct: 802 GPQPPDPKEPGPWYRARPLNGVWATAPYLHNGSVPSLDWMLRPAAERPKKFCMGQRDYDP 861
Query: 514 DKVGLA---AQQTQFGSYVLKTTGCE-QRASGNSRCGHEY------------GTSLSAEE 557
VG A ++ + G TT + +GNS GH + G L EE
Sbjct: 862 KLVGFAVVEGERCKTGETQFSTTWPDGTEINGNSNLGHSFEGKGPPHKDGVVGRLLEEEE 921
Query: 558 KRALLEYLKVL 568
++ L+EYLK L
Sbjct: 922 RKDLIEYLKTL 932
>dbj|BAC45286.1| (AP005935) bll0021 [Bradyrhizobium japonicum USDA 110]
Length = 666
Score = 154 bits (388), Expect = 2e-36
Identities = 182/650 (28%), Positives = 278/650 (42%), Gaps = 125/650 (19%)
Query: 14 SLVSLALSSAALAAAPVMLDQGKEWTESHRQDFYSRDQGSQVMPLP--WLKALRQPDGTP 71
+L L A+ V LDQG W F+ + QG+Q +P+P W AL P +P
Sbjct: 43 ALTPPGLPEPVSASEQVSLDQG--WNAEDADRFHHKAQGTQTLPIPLSWFLALEAPLNSP 100
Query: 72 F---------LADS--LARYGYLPNPKAPAE--GLPVGF------TVAGTGARQM-VGMT 111
F +D+ L R+G++ + ++ GLP+GF ++ G ++ VG+T
Sbjct: 101 FAIPFFKRERFSDNRYLLRFGFIESAESENNEYGLPIGFAYSPFQSIRGLSRKETAVGLT 160
Query: 112 CSACHTRQIEVKGTAYRIDGGPAIVDFQAFLADLDRAV------GPLTSDDAAFDAFAKQ 165
C+ACHT Q+ K Y I+GGPA+ D L A+ L D F FAK+
Sbjct: 161 CAACHTGQLIFKEKRYVIEGGPAVTDLGQLTNALRAALAQTALSAKLPFFDGRFGRFAKR 220
Query: 166 ILGANPPPGARDALLAAVKEWYEPYHTLIERALPKD-TWGPARLDAVSMIFNRLTGLDIG 224
+LG R L KE LI++ D T G RLDA++ I N++ LD
Sbjct: 221 VLGTEYSDLTRVQL---SKELDGILGALIDQPAGIDVTEGFTRLDALNRIGNQVFALDPK 277
Query: 225 TAPPYLIPDNIKAADAPVRYPFLWNAARQNKTQWPGFAANGNDLLGLARNVGEVYGVFAT 284
Y+ +APV YP +W ++ + Q+ +G+ + L RN GE GV A
Sbjct: 278 RYGNYV------NLNAPVSYPHIWTSSWFDWVQY-----DGSIMQPLVRNAGEAMGVSAE 326
Query: 285 FH---PQKSKFHLLGMDYLKVNSANFHGLGKLEELIKK----IGPPKWP---WAVDKHLA 334
+ P K + + ++ GK L+ K + P WP A+DK A
Sbjct: 327 LNLTAPPKGGRFASSIPFDNLHWIEQQLAGKDLPLVAKAFTGLNAPAWPDSFPAIDKAKA 386
Query: 335 RKGALIFARKTDEGGCVECH---------GIRIKDLVLWDT--PLRDVGSDSRQHAILDG 383
GA ++ + C CH + D W P+R G D ++ +
Sbjct: 387 AVGAQLYDKH-----CSGCHLPALTPDIVHGKAPDAEFWKNFGPIRWRGRDGQEKQTRES 441
Query: 384 QVQTGVMEGARMPFGQPLKATDEA-FDVL---AVAVAGSILQ---HFVPILGEKHDA--- 433
+ +++ + + TD A DVL V AGS L P LG D
Sbjct: 442 VLNVKIIKQSHI-------GTDPAQGDVLRNRTVDTAGSELARAGQSSPGLGLDIDVCQR 494
Query: 434 KAAAVKPESVMTDETRQLLT-AFQKPVRTQADP-----------------------YPYE 469
KA ++D QL A V++ D + Y+
Sbjct: 495 KADNTLDTIHLSDHAMQLYALALGAVVQSGIDEWLRSTGTVQAEIEGDRPNCLAAGFGYK 554
Query: 470 SRVLQGIWAAAPYLHNGSVPTLEELLKPAAERVESFPVGS-AYDVDKVGLAAQQT----- 523
+R L G+WA AP+LHNGSVPT+ +LL P AER + F +G ++D +VG+ +
Sbjct: 555 ARPLNGVWATAPFLHNGSVPTIYDLLSPVAERPQVFLLGEPSFDPVRVGIVTRTVAPEGR 614
Query: 524 ---QFGSYVLKTTGCEQRASGN--SRCGHE--YGTSLSAEEKRALLEYLK 566
G +++ T+ R +G+ S HE G +LS EE+ A++E+LK
Sbjct: 615 TYDSKGYFIIDTSRPANRNTGHEFSNEKHEGVIGPALSPEERNAIIEFLK 664
>gb|AAG05466.1|AE004635_4 (AE004635) hypothetical protein [Pseudomonas aeruginosa PAO1]
Length = 624
Score = 119 bits (297), Expect = 7e-26
Identities = 102/377 (27%), Positives = 157/377 (41%), Gaps = 55/377 (14%)
Query: 13 LSLVSLALSSAALAAAPVMLDQGKEWTESHRQDFYSRDQGSQVMPLPWLKALRQPDGTP- 71
L +LA + + A + L+QG W R +Y GS+++PL W +AL +PD
Sbjct: 9 LLAAALAAAGSPAVATEIQLEQG--WNAEQRASWYDASLGSRLLPLAWAQALERPDSEER 66
Query: 72 -FLADSLARYGY-LPNPKAPAEGLPVGFTV-----------------AGTGARQMVGMTC 112
F D+ R G+ L N + LP GF + + + VG+ C
Sbjct: 67 LFSEDNARRLGFPLRNWQGGELRLPRGFALDQQDDSQFSDTRLRWKARQSSSEPWVGLNC 126
Query: 113 SACHTRQIEVKGTAYRIDGGPAIVDFQAFLADLDRAVGPLTSDDAAFDAFAKQILGANPP 172
+ CH+ I +G+ +D G + + QA ++ A+ + D F FA +LG+
Sbjct: 127 AGCHSTDISYRGSELTVDAGATLANVQAIFDEVLAALRRTSDDGDKFARFAGNVLGSEDS 186
Query: 173 PGARDALLAAVKEWYEPYHTLIERALPKDTWGPARLDAVSMIFNRLTGLDIGTAPPYLIP 232
P R+ L AA+ + TL+ + GP RLDA NR I + +L
Sbjct: 187 PANRELLKAALVKRAALIDTLLSMSATDLQPGPGRLDATGQSLNRAA---INSGARHL-- 241
Query: 233 DNIKAADAPVRYPFLWNAARQNKTQWPGFAANGN---------DLLGLARNVGEVYGVF- 282
DAP +P LW+ + +K Q GF N DL LA ++G V G +
Sbjct: 242 -QANPTDAPTSFPALWHTLQMDKLQSSGFVPNVKVLDLNGQVFDLGYLAGDIGVVQGDYG 300
Query: 283 -ATFHPQKSKFHLLGMDYLKVNSANFHGLGKLEELIKKIGPPKWP----WAVDKHLARKG 337
HP L G++ ++S L ++E LI K+ P WP A D +G
Sbjct: 301 DVVSHP------LSGLEGY-ISSIRVDNLTRVEGLIHKLKAPAWPSQLFGAPDSARLAQG 353
Query: 338 ALIFARKTDEGGCVECH 354
++ E C CH
Sbjct: 354 KRLY-----EENCAACH 365
Score = 76.6 bits (187), Expect = 4e-13
Identities = 42/102 (41%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query: 468 YESRVLQGIWAAAPYLHNGSVPTLEELLKPAAERVESFPVGS-AYDVDKVGLAAQQTQFG 526
Y +R L GIWA APYLHNGSVP+L +LL P +R +F GS +D +VG
Sbjct: 528 YIARPLNGIWATAPYLHNGSVPSLYDLLLPQEQRPATFYTGSHEFDPSRVGYLTAPGPDN 587
Query: 527 SYVLKTTGCEQRASGNSRCGHEYGTSLSAEEKRALLEYLKVL 568
+++ T GNS GH++ ++ ALLEYLK L
Sbjct: 588 AFLFDT-----HLEGNSNAGHDFAREYDESQRLALLEYLKTL 624
>gb|AAG60867.1|AF322012_172 (AF322013) ID385 [Bradyrhizobium japonicum]
Length = 112
Score = 79.0 bits (193), Expect = 8e-14
Identities = 48/112 (42%), Positives = 60/112 (53%), Gaps = 16/112 (14%)
Query: 473 LQGIWAAAPYLHNGSVPTLEELLKPAAERVESFPVGS-AYDVDKVGLAAQQTQFGSYVLK 531
+ G+WA APYLHNGSVPTL ++L P A+R SF VGS A+D VGLA + S
Sbjct: 1 MDGVWATAPYLHNGSVPTLRDMLVPHAKRPMSFCVGSRAFDPVNVGLATKAQSSESCAAG 60
Query: 532 TTGCEQRASGNSRCGHEY---------------GTSLSAEEKRALLEYLKVL 568
T + GNS GH + G L+ E+RAL+EYLK L
Sbjct: 61 LTNFDVSLLGNSNRGHSFEGKETDLRKLPPGIIGPELTDAERRALVEYLKTL 112
>emb|CAD18319.1| (AL646083) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Ralstonia
solanacearum]
Length = 628
Score = 72.4 bits (176), Expect = 7e-12
Identities = 45/104 (43%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 468 YESRVLQGIWAAAPYLHNGSVPTLEELLKPAAERVESFPVGSA-YDVDKVGL--AAQQTQ 524
Y + GIW APYLHNGSVPTL +LL+ R + F GS+ +D + VG A +T+
Sbjct: 529 YSNTPTDGIWLRAPYLHNGSVPTLWDLLQKPEHRPKVFYRGSSVFDREHVGFVTAGPETK 588
Query: 525 FGSYVLKTTGCEQRASGNSRCGHEYGTSLSAEEKRALLEYLKVL 568
G TG GN GH YGT L+ EK L+EY+K L
Sbjct: 589 GGGTFKFDTG----LPGNRNTGHAYGTDLTDSEKCDLIEYMKTL 628
>emb|CAD78304.1| (BX294141) conserved hypothetical protein [Pirellula sp.]
Length = 604
Score = 71.2 bits (173), Expect = 2e-11
Identities = 45/114 (39%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Query: 460 RTQADPYPYESRVLQGIWAAAPYLHNGSVPTLEELLKPAAERVESFPVGSAYDVDKVG-- 517
+T +P Y + L G+WA+ PY HNGSVPTL +L P V A D ++VG
Sbjct: 491 KTLVNPEGYVAPPLDGVWASPPYFHNGSVPTLWHVLHPEERPVVWRRSEEAIDRERVGFQ 550
Query: 518 --LAAQQTQFGSYVL-KTTGCEQRASGNSRCGHEYGTSLSAEEKRALLEYLKVL 568
LA + F VL + + + R G + GH+Y L+ EKRA+LEYLK L
Sbjct: 551 IELAEKTPLFQPDVLIRRSYFDTRRFGKNASGHDYPDELNEAEKRAVLEYLKTL 604
>gb|AAB91708.1| (AE000078) Y4iM [Rhizobium sp. NGR234]
Length = 432
Score = 69.7 bits (169), Expect = 5e-11
Identities = 85/341 (24%), Positives = 132/341 (38%), Gaps = 87/341 (25%)
Query: 245 PFLWNAARQNKTQWPGFAANGNDLLGLARNVGEVYGVFATFHPQKSKFHLLGMDYLKVNS 304
P +WN ++ QW +G+ + RN+ ++ ++G D K++
Sbjct: 158 PSVWNQQERSLAQW-----DGSVKMAFWRNIA-------------AQLPIVG-DPSKIDL 198
Query: 305 ANFHGLGKLEELIKKIGPPKWPWAVDKHLARKGALIFARKTDEGGCVECHGIRIKDLVLW 364
N G + + + P +P+ VD A +G +F + C CH +
Sbjct: 199 VN---TGVVANFLDGLPPAAYPFDVDMASAVRGEALF-----KDNCAVCHKPHNDTIY-- 248
Query: 365 DTPLRDVGSDSRQHAILDGQVQTGVMEGARMPFGQPLKATDEAFDVLAVAVAGSIL-QHF 423
RD+G+D + A+L+ D AF + A S Q F
Sbjct: 249 --QFRDIGTDMNRAAVLN----------------------DAAFHLFAAGFQASCHDQDF 284
Query: 424 VPILGEKHDAKAAAVKPESVMTDETRQLLTAFQKPVRTQADPYPYESRVLQGIWAAAPYL 483
+ + + + E V+T RT Y + VL G+WA APYL
Sbjct: 285 LYRSPTGEEVRPCRMAGEDVIT-------------ARTTPAVQGYVAEVLDGVWARAPYL 331
Query: 484 HNGSVPTLEELLKPAAERVESFPVGS-AYDVDKVGLAAQQTQFGSYVLKT----TGCEQR 538
HNGS+PTL LL PA+ R E F G+ YD KVG G V T T ++R
Sbjct: 332 HNGSIPTLYHLLVPAS-RPEQFLRGAIQYDTAKVGYVLDPAVTG-LVADTSPTLTIYDRR 389
Query: 539 ASGNSRCGHEYGTSLSAEEKRA-------------LLEYLK 566
G++ GH+ + + +R L+EYLK
Sbjct: 390 KDGHAGTGHDRNLVVDGKLRRLDWSGPQYADALKDLIEYLK 430
>gb|AAP41848.1| (AY230855) 70 kDa protein [Xanthomonas sp. 35Y]
Length = 678
Score = 49.3 bits (116), Expect = 6e-05
Identities = 103/505 (20%), Positives = 164/505 (32%), Gaps = 159/505 (31%)
Query: 58 LPWLKALRQPDGTPFLADSLARYGYLPNP---KAPAEGLPVGFTVAGTGARQM------- 107
L W +R PD F RYG P P P G T G+G +
Sbjct: 138 LQWGYLIRPPD---FEEQVSKRYGLYPAPFRNPYPLPGEDPNQTNGGSGQLPLGLIQGKD 194
Query: 108 --------VGMTCSACHTRQIEVKGTAYRIDGGPAIVDFQAFLADLDRAVGPLTSDDAAF 159
+G +CSACH D +G T+ +A+F
Sbjct: 195 DNGRWTGLIGASCSACH-----------------------------DSRLG--TASEASF 223
Query: 160 DAFAKQILGANPPPGARDALLAAVKEWYEPYHTLIERALPKDTWGPAR--LDAVSMI--F 215
P A DA L A + T + LP W R DA+ +I
Sbjct: 224 KW--------GLPNSANDAGLLASDMFRTTPITALGNLLPLP-WSTGRGSSDAIGLISLL 274
Query: 216 NRLTGLDIGTAPPYLIPDNIKAADAP----VRYPFLWNAARQNKTQWPGFAANGNDLLGL 271
L ++ T P L+ ADAP + P W A + + W G ++ N +
Sbjct: 275 PALFDMETLTLAPSLLE---YVADAPHAGMTKAPAWWARAFKTRQFWDGSLSSDNVHSEM 331
Query: 272 ARNVGEVYGVFATFHPQKSKFHLLGMDYLKVNSANFHGLGKLEELIKKIGPPKWPWAVDK 331
A V ++ + +F + + + P +P ++
Sbjct: 332 AFGVANIFRDANARRGLEDEFE------------------DINNFLISLSPATYPKTINT 373
Query: 332 HLARKGALIFARK--------------TDEGGCVECHGI---------------RIKDLV 362
LA +GA+I+ + G C CHG+ R+K +
Sbjct: 374 ALAEQGAVIYHERDLWASGANGAIPKPAGNGSCASCHGVYSPRHAADPNYLPDPRLKGVA 433
Query: 363 LWDTPLRDVGSDSRQHAILDGQVQTGVMEGARMPFGQPLKATDEAFDVLAVAVAGSILQH 422
TP+ + +D R+ ++ + Q A++ L+ + G
Sbjct: 434 AVVTPIETIRTDPRRMRLMADERQRRAWNSGWW-----------AYNNLSPSWTG----- 477
Query: 423 FVPILGEKHDAKAAAVKPESVMTDETRQLLTAFQK---PVRTQADPYPYESRV------L 473
++++ E R++ A P+ + P +E L
Sbjct: 478 ---------------YPSDNIVASELRRVPRAIYNNGGPIYSPLGPNIWEEPTGYIAPPL 522
Query: 474 QGIWAAAPYLHNGSVPTLEELLKPA 498
G WA APY HNGSVP L +LKP+
Sbjct: 523 YGAWATAPYFHNGSVPNLWGVLKPS 547
>gb|AAN47865.1|AE011253_2 (AE011253) Methylamine utilization protein mauG [Leptospira
interrogans serovar lai str. 56601]
Length = 340
Score = 43.1 bits (100), Expect = 0.005
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 417 GSILQHFVPILGEKHDAKAAAVKPESVMTDETRQLLTAFQKPVRTQADPYPYESRVLQGI 476
G I H P+LG K + P +D+ RQ LT + +D + ++ L+ +
Sbjct: 234 GCITCHVGPLLGGNSFRKLGQINPYENSSDKGRQDLT------KNSSDAFVFKVPSLRNV 287
Query: 477 WAAAPYLHNGSVPTLEELLKPAA 499
PY H+G + TLEE +K A
Sbjct: 288 AITGPYFHDGKITTLEEAVKKMA 310
>dbj|BAC47149.1| (AP005941) bsl1884 [Bradyrhizobium japonicum USDA 110]
Length = 91
Score = 42.7 bits (99), Expect = 0.006
Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 494 LLKPAAERVESFPVGS-AYDVDKVGLAAQQTQFGSYVLKTTGCEQRASGNSRCGHEY--- 549
+L P A+R SF VGS A+D VGLA + S T + GNS GH +
Sbjct: 1 MLVPHAKRPMSFCVGSRAFDPVNVGLATKAQSSESCAAGLTNFDVSLLGNSNRGHSFEGK 60
Query: 550 ------------GTSLSAEEKRALLEYLKVL 568
G L+ E+RAL+EYLK L
Sbjct: 61 ETDLRKLPPGIIGPELTDAERRALVEYLKTL 91
Database: gbbct
Posted date: Sep 29, 2003 6:22 PM
Number of letters in database: 35,829,034
Number of sequences in database: 119,422
Database: /blastdb/gbbct/gbbct2.aso
Posted date: Sep 29, 2003 6:23 PM
Number of letters in database: 46,604,961
Number of sequences in database: 153,703
Database: /blastdb/gbbct/gbbct3.aso
Posted date: Sep 29, 2003 6:24 PM
Number of letters in database: 37,964,456
Number of sequences in database: 126,043
Database: /blastdb/gbbct/gbbct4.aso
Posted date: Sep 29, 2003 6:29 PM
Number of letters in database: 44,801,584
Number of sequences in database: 150,186
Database: /blastdb/gbbct/gbbct5.aso
Posted date: Sep 29, 2003 6:29 PM
Number of letters in database: 3,182,186
Number of sequences in database: 10,611
Lambda K H
0.319 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,652,345
Number of Sequences: 559965
Number of extensions: 8839773
Number of successful extensions: 21436
Number of sequences better than 1.0e-02: 14
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 21378
Number of HSP's gapped (non-prelim): 26
length of query: 568
length of database: 168,382,221
effective HSP length: 122
effective length of query: 446
effective length of database: 100,066,491
effective search space: 44629654986
effective search space used: 44629654986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 98 (42.4 bits)