BLASTP 2.2.6 [Apr-09-2003]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: gbbct 
           559,965 sequences; 168,382,221 total letters



Query= 6988 (859 letters)

Distribution of 5 Blast Hits on the Query Sequence




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB09604.1|  (M38373) ORF4 [Haloferax alicantei] [Halofer...   330   2e-89 
gb|AAF10482.1|AE001943_2  (AE001943) conserved hypothetical ...   252   8e-66 
gb|AAK25017.1|  (AE005968) hypothetical protein [Caulobacter...    44   0.004 
>gb|AAB09604.1| (M38373) ORF4 [Haloferax alicantei] [Haloferax lucentensis]
          Length = 744

 Score =  330 bits (847), Expect = 2e-89
 Identities = 225/558 (40%), Positives = 312/558 (55%), Gaps = 8/558 (1%)

Query: 305 VLLLLATLDLVQRGLGDVDVATLDQLGHLAEEEGQQQGADVRTVDVSIGHDDDVVVAQLV 364
           V+ + A  D VQR L  V VA LD+  H+  ++ +QQ  DVR VDV +GH D+ +VA+L+
Sbjct: 125 VVGVAAVADAVQRRLSRVHVAGLDERAHVPVQKRKQQRPDVRAVDVGVGHQDEPLVARLL 184

Query: 365 DVVLLAADATAQGGDQRTDLLGGEHLVEACLLDVEDLALERQDRLGPAIAALLGGTARGV 424
           DV L+A DA A GGD+R  L+  E+ VEA  LDV++L LE Q+RL  A+AALLG  ARGV
Sbjct: 185 DVELVA-DAAANGGDERPYLVVFENAVEAVFLDVQNLPLEGQNRLELAVAALLGRPARGV 243

Query: 425 TLHDVQFGERRVLFLAIGQFAGQAGDVQRALAAGHLARLARGFTGTGGVDHLADHGLGFV 484
            LHD QFG R V  LA+ +   Q G  +R LAAG L  L RG  G GG+D L D G   V
Sbjct: 244 ALHDEQFGLRGVAALAVRELPRQRGRFERGLAAGELLGLLRGLAGAGGLDGLRDDGRRRV 303

Query: 485 GILQQEVGEVLAHLLFHRGLHLGGDQLVLGLRAELRVRYLHRDDRGEAFAGIVAGG-GDL 543
            +L +E  E+L          LG  +L L L  ELRV  L  DD GE+ A ++A     +
Sbjct: 304 RVLLEERPELLVGDALDDAADLGIPELGLRLALELRVGVLDGDDGGESLANVLAAEVVAV 363

Query: 544 EFLRQAFGLDVVVQVTRQRRTETGQVGAAITLRDVVGEAEQVLVEAVVPLQGDFHTHAVL 603
           E ++    + VVV    +RR E GQ+ AA+   DVVGE     +E V  L GDF   A+ 
Sbjct: 364 EVVQHVVAVRVVVDDAGERRLEPGQMRAALAGVDVVGEGVNRPLELVGRLHGDFDLDALR 423

Query: 604 FTLDVEVEYLVHRGLVGVQVLDEGLQTAFVLEQLLLAGTLVAQQDADAGVEEGQFADALG 663
             + V+ + +V R L  V+VLDE    A   E+  L G LV +++ D GVEE + + A+ 
Sbjct: 424 LVVVVD-DVVVERRLGLVEVLDELADAALEEERARLVGPLVGERNLDPGVEERELSQAVF 482

Query: 664 QDVPTEVDVAEGLRGRLEVNFGTGAIG---LAHFAQ-WELRNAVVVDLFPDLVVATDGQA 719
           + +  E+   E    R + +  +G      +AH  +  +LR A +  + P   V  D   
Sbjct: 483 ERLEVELGRLEDTVVRPKADGRSGVFAGFEVAHALELLDLRLADLEAVCPHRAVVFDLDF 542

Query: 720 QLMGQRVHHRDAHTVQAAGHFVGVVVELAAGVEDGHDHFRRRNPFFLVDIHRNTASIVAD 779
           +   QRV   DA  V+AAG  VG+VVEL AGVEDGHD  +R +    V  +RN A++V D
Sbjct: 543 EFARQRVDDGDADAVEAAGDLVGLVVELPAGVEDGHDDLQRGSVVLFVRTYRNPAAVVGD 602

Query: 780 SDRLIRMDGDADFAAVTGQRFVDGVIHHLEHHVVQTGAIVGVADVHAGALAYGIQPLQHL 839
           +DR + ++GD D  AV  +R VDGV+      VV++ A +G  DVH   L+ G +P + L
Sbjct: 603 ADRAVLVEGDLDGVAVARERLVDGVVDDFVDEVVES-ARIGGPDVHRRTLSNGFKPFEDL 661

Query: 840 DAGRVVRVVLAHASLPMV 857
           +    V V+L H + P +
Sbjct: 662 NLSGPVLVILRHLNRPRI 679

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 72/236 (30%), Positives = 94/236 (39%), Gaps = 56/236 (23%)

Query: 30  PAPGRGFHEGRSADLSHVQVRHRQRVAFDEVAARLHGIAHQGVEDLVGGDGVLDGHLEHA 89
           PAPG     G S  +  V      RV  DE+ +R  G+AHQ VE  VGG GVLDG     
Sbjct: 20  PAPGSN-ESGASELILDVYPFGVVRVVLDELLSRPDGVAHQDVEHPVGGGGVLDGDALED 78

Query: 90  PDVRIHGGFPQLLRVHLAQPLVSL------------DAVALGTFGH-QPVQAVLEGADRA 136
               +H   PQL+ VHL + L  L            DAV LG       V AV +   R 
Sbjct: 79  AVFGVHRRVPQLVGVHLTESLEPLDLRGVAVAFLLDDAVPLGLVHRVVGVAAVADAVQR- 137

Query: 137 LALTLLHVGAVFQQAVQLVAEQRHRAVVIAGEEVTVEGDVAGQAVGHQFHLGQPQVALAV 196
             L+ +HV  + ++A   V +++ +   +   +V          VGHQ    +P VA  +
Sbjct: 138 -RLSRVHVAGLDERAHVPVQKRKQQRPDVRAVDV---------GVGHQ---DEPLVARLL 184

Query: 197 FAQAGLVGQARLLGG--------------------------GQARLELLQPALHGR 226
             +  LV  A   GG                          GQ RLEL   AL GR
Sbjct: 185 DVE--LVADAAANGGDERPYLVVFENAVEAVFLDVQNLPLEGQNRLELAVAALLGR 238
>gb|AAF10482.1|AE001943_2 (AE001943) conserved hypothetical protein [Deinococcus radiodurans]
          Length = 736

 Score =  252 bits (643), Expect = 8e-66
 Identities = 208/580 (35%), Positives = 275/580 (47%), Gaps = 48/580 (8%)

Query: 298 HGLVVLDVLLLLATLDLVQRGLGDVDVATLDQLGHLAEEEGQQQGADVRTVDVSIGHDDD 357
           H LVVL    L A  DLV+R L DV+V  LD   H AEE+G+QQ  DV  V V +GHD D
Sbjct: 97  HALVVLG---LGAHRDLVERRLRDVEVPLLDDGAHEAEEKGEQQRGDVPAVHVGVGHDHD 153

Query: 358 VVVAQLVDV----VLLAADATAQGGDQRTDLLGGEHLVEACLLDVEDLALERQDRLGPAI 413
           +VVAQ+++V    + LA +A A G DQR D    E+LV+  L  V+DLA + Q+RL    
Sbjct: 154 LVVAQVLEVEAHFLALAVEARADGPDQRADFGVLENLVQLGLFHVQDLAAQGQNRLEAPF 213

Query: 414 AALLGGTARGVTLHDVQFGERRVLFLAIGQFAGQAGDVQRALAAGHLARLARGFTGTGGV 473
           A+ LG  A  V  HD QFG   VL  A+G+  GQ    +R  A   +A LA G  G G +
Sbjct: 214 ASALGRAACRVAFHDEQFGLGGVLRGAVGELTGQVIVFERVGAPHDVAGLAGGVAGAGSL 273

Query: 474 DHLADHGLGFVGILQQEVGEVLAHLLFHRGLHLGGDQLVLGLRAELRVRYLHRDDRGEAF 533
                 GL  +GI  +E+ E+LAH      L L  +QL LGLR ELRV +L      +AF
Sbjct: 274 GGFFHDGLADLGIFLEELRELLAHDGVDGRLRLTVEQLDLGLRLELRVAHLDAHHAVDAF 333

Query: 534 AGIVAGGGDLEFLRQAFGLDVVVQVTRQRRTETGQVGAAITLRDVVGEAEQVLVEAVVPL 593
             +VA    +  L +   L V+V+    RR E GQ GAA+   D VG  + V+    V +
Sbjct: 334 EQVVAARHRIAGLDEVLVLGVLVEHAGVRRLEAGQRGAAVAGADHVGVGQDVVAGVGVGV 393

Query: 594 Q----------GDFHTHAVLFTLDVEVEYLVHRGLVGVQVLDEGLQTAFVLEQLLL---- 639
                      G  H H ++      VE L   G+VG Q   E    A ++E L L    
Sbjct: 394 DKRHLDFDLGVGAAHDHRLV------VEQL---GVVGDQGAGEVGDAALLVEDLFLDFAA 444

Query: 640 --AGTLVAQQDADAGVEEGQFADALGQDVPTE----------VDVAEGLRGRLEVNFGTG 687
              G LV   D  A  + G+FA  +      E          V V   L G L V  G  
Sbjct: 445 VQFGALVTDDDFQAR-QVGEFAQTVADTQVVELVVELLEDGGVGVKADLGGPLHVFRG-- 501

Query: 688 AIGLAHFAQWELRNAVVVDLFPDLVVATDGQAQLMGQRVHHRDAHTVQAAGHFVGVVVEL 747
             G  HF +      +  D+   L+V   G  ++  + V HR AH VQ A H VG + EL
Sbjct: 502 --GAEHFERLHEHAPLKADVV-QLLVLVHGHVEVGRECVDHRGAHAVQPARHLVGALTEL 558

Query: 748 AAGVEDGHDHFRRRNPFFLVDIHRNTASIVADSDRLIRMDGDADFAAVTGQRFVDGVIHH 807
           AA V+ G +HF       L D+H N AS+V DS   + +  + DFA    +  VD V+  
Sbjct: 559 AARVQLGENHFDGGAALGLHDVHGNAASVVGDSGGAVSVQHNLDFAGEAREPLVDAVVDD 618

Query: 808 LEHHVVQTGAIVGVADVHAGALAYGIQPLQHLDAGRVVRV 847
               +V          VHAGA A+G+   +  D   VV V
Sbjct: 619 FGQQLVIAVDAGAALHVHAGAFAHGVHAFEDTDLVGVVVV 658

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 183/685 (26%), Positives = 252/685 (36%), Gaps = 182/685 (26%)

Query: 55  VAFDEVAARLHGIAHQGVEDLVGGDGVLDGH-LEHAPDVRIHGGFPQLLRVHLAQPLVSL 113
           V  D+V AR     HQ VE+LVG D V+D H LEHA    +HGGFPQLL VH A+ L +L
Sbjct: 14  VLADKVLARRDFRTHQRVENLVGDDEVVDAHTLEHAR-FGVHGGFPQLLGVHFAEALEAL 72

Query: 114 DAVAL-GTFGHQPVQAVLEGADRALALTLLHVGA--------VFQQAVQLVAEQRHRAVV 164
           + V L G  G   V   L   ++  AL +L +GA        +    V L+ +  H A  
Sbjct: 73  NLVLLAGLDGVSDVLLELFIGEQVHALVVLGLGAHRDLVERRLRDVEVPLLDDGAHEAEE 132

Query: 165 IAGEEVTVEGDVAGQAVGHQFHLGQPQV--------ALAVFAQA---------------- 200
             GE+   +       VGH   L   QV        ALAV A+A                
Sbjct: 133 -KGEQQRGDVPAVHVGVGHDHDLVVAQVLEVEAHFLALAVEARADGPDQRADFGVLENLV 191

Query: 201 --GLVGQARLLGGGQARLELLQPALHGRLVSQVVHRHGRQ----------VDEVLGQLL- 247
             GL     L   GQ RLE    +  GR   +V   H  Q          V E+ GQ++ 
Sbjct: 192 QLGLFHVQDLAAQGQNRLEAPFASALGRAACRVAF-HDEQFGLGGVLRGAVGELTGQVIV 250

Query: 248 ---------------GVQARQALEGGDHPAIL-VDQFLQR---------CPGQARSVLVD 282
                          GV    +L G  H  +  +  FL+            G+ R  +  
Sbjct: 251 FERVGAPHDVAGLAGGVAGAGSLGGFFHDGLADLGIFLEELRELLAHDGVDGRLRLTVEQ 310

Query: 283 VQAGV-FQGRLGHVLFHGLV--------------------VLDVLLLLATLDLVQRGLGD 321
           +  G+  + R+ H+  H  V                    VL VL+  A +  ++ G   
Sbjct: 311 LDLGLRLELRVAHLDAHHAVDAFEQVVAARHRIAGLDEVLVLGVLVEHAGVRRLEAGQRG 370

Query: 322 VDVATLDQLGHLAE-EEGQQQGADVRTVDVSIG----HDDDVVVAQLVDVVLLAADATAQ 376
             VA  D +G   +   G   G D R +D  +G    HD  +VV QL  V          
Sbjct: 371 AAVAGADHVGVGQDVVAGVGVGVDKRHLDFDLGVGAAHDHRLVVEQLGVV---------- 420

Query: 377 GGDQRTDLLGGEHLVEACLLDVEDLALERQDRLGPAIAALLGGTARGVTLHDVQFGERRV 436
            GDQ     G   + +A LL VEDL L+                  G  + D  F  R+V
Sbjct: 421 -GDQ-----GAGEVGDAALL-VEDLFLD------------FAAVQFGALVTDDDFQARQV 461

Query: 437 LFLAIGQFAGQAGDVQRALAAGHLARLARGFTGT------------GGVDH---LADHGL 481
                G+FA    D Q       L  L  G  G             GG +H   L +H  
Sbjct: 462 -----GEFAQTVADTQVVELVVEL--LEDGGVGVKADLGGPLHVFRGGAEHFERLHEHAP 514

Query: 482 GFVGILQQEV-----GEVLAHLLFHRGLH-LGGDQLVLGLRAELRVRYLHRDDRGEAFAG 535
               ++Q  V      EV    + HRG H +   + ++G   EL  R    ++  +  A 
Sbjct: 515 LKADVVQLLVLVHGHVEVGRECVDHRGAHAVQPARHLVGALTELAARVQLGENHFDGGA- 573

Query: 536 IVAGGGDLEFLRQAFGLDVVVQVTRQRRTETGQVGAAITLR---DVVGEAEQVLVEAVVP 592
                        A GL     V     +  G  G A++++   D  GEA + LV+AVV 
Sbjct: 574 -------------ALGLH---DVHGNAASVVGDSGGAVSVQHNLDFAGEAREPLVDAVV- 616

Query: 593 LQGDFHTHAVLFTLDVEVEYLVHRG 617
              DF    V+  +D      VH G
Sbjct: 617 --DDFGQQLVI-AVDAGAALHVHAG 638
>gb|AAK25017.1| (AE005968) hypothetical protein [Caulobacter crescentus CB15]
          Length = 738

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 144/539 (26%), Positives = 186/539 (34%), Gaps = 136/539 (25%)

Query: 123 HQPVQAVLEGAD-----RALALTLLHVGAVFQQAVQLVAEQRHRA---VVIAGEEVTVEG 174
           HQP  A L  AD     RAL    L  G   + AV+    Q   A   +++ G +V    
Sbjct: 72  HQPSAADLGEADDHGVARALGRDDLGAGG-HRLAVEAAGGQGQAAADLLLVGGVDVVRVA 130

Query: 175 DVAGQAVGHQFHLGQPQVALAVFAQAGLVGQARLLGGGQARLELLQPALHGRLVSQVV-- 232
           DV G        +G  + AL V    G  GQAR  G      +L     H R ++Q    
Sbjct: 131 DVVGDDEAGA-RIGGDRAALGVAQGGGSGGQARRGGVAAIVGQLHDKRGHVRRLAQAALG 189

Query: 233 HRHGRQVDEVL-----------GQL-LGVQARQALEGGDHPAILVDQFLQRCPGQARSVL 280
           H   +QV   L           GQ  +GV+A +    G+H  I      Q  P +A  + 
Sbjct: 190 HEGAQQVHIGLVAADIGLALIPGQAPIGVRAHR----GEHAVIEGRDARQGVPRRAGRIA 245

Query: 281 VDVQ--------------AGVFQGRLGHVLFHGLVVLDVLLLLATLDLVQRGLGDVDVAT 326
              +               G  QG LG +  H  V + V+           G GD  V  
Sbjct: 246 AGARLDPVAPARQRQLGSVGQGQGPLGRIAVHAAVGVGVV-----------GRGDDGVLA 294

Query: 327 ----LDQLGHLAEEEGQQQGADVRTVDVSIGHDDDVVVAQLVDVVLLAADATAQGGDQRT 382
                D+ G ++ + G +  AD   V++   H        LVD+      A AQGG  R 
Sbjct: 295 GLQRADRQGVVSLQPGSRGRADAHAVEIGGVH--------LVDL------AKAQGGGLRG 340

Query: 383 DLLGGEHLVEACLLDVEDLALERQDRLGPAIAALLGGTARGVTLHDVQFGERRVLFLAIG 442
             LGG  L         DL LE  D      A  LG         D Q   R        
Sbjct: 341 --LGGGQL---------DLGLEPDD------AVELGQGRNAPAFPDPQIARR-------- 375

Query: 443 QFAGQAGDVQRALAAGHLARLARGFTGTGGVDHL--ADHGLGFVG--ILQQEVGEVLAHL 498
              G+ G        G   RLA G     G+DHL  A  G G VG   +Q   G V+A  
Sbjct: 376 ---GRPGS---GAGPGRQGRLAGGLGAPPGLDHLAPATAGGGLVGDRQVQDRDGVVIAAD 429

Query: 499 LF-----HRGLHL-----GGDQLVLGLRAELR----VRYLHRDDRGEAFAGIVAGGGDLE 544
           L      H GL       G DQ    L   L+    V    R+       G + GG  LE
Sbjct: 430 LAKGRRRHPGLDARAAPRGVDQAQRDLPRLLQLAGEVEAAGREGADRVLVGRLPGGRFLE 489

Query: 545 FLRQAFGLDVVVQVTRQRRTETGQVGAAITLRDVVGEAEQVLVEAVVPLQGDFHTHAVL 603
            L    G+ ++      R    G VG A+   D+V           V   GD H H  L
Sbjct: 490 VLGGRAGVGLL-----DRGHADGVVGRAVV--DLV---------PGVARGGDLHLHVRL 532
  Database: gbbct
    Posted date:  Sep 29, 2003  6:22 PM
  Number of letters in database: 35,829,034
  Number of sequences in database:  119,422
  
  Database: /blastdb/gbbct/gbbct2.aso
    Posted date:  Sep 29, 2003  6:23 PM
  Number of letters in database: 46,604,961
  Number of sequences in database:  153,703
  
  Database: /blastdb/gbbct/gbbct3.aso
    Posted date:  Sep 29, 2003  6:24 PM
  Number of letters in database: 37,964,456
  Number of sequences in database:  126,043
  
  Database: /blastdb/gbbct/gbbct4.aso
    Posted date:  Sep 29, 2003  6:29 PM
  Number of letters in database: 44,801,584
  Number of sequences in database:  150,186
  
  Database: /blastdb/gbbct/gbbct5.aso
    Posted date:  Sep 29, 2003  6:29 PM
  Number of letters in database: 3,182,186
  Number of sequences in database:  10,611
  
Lambda     K      H
   0.323    0.141    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 296,848,187
Number of Sequences: 559965
Number of extensions: 14002297
Number of successful extensions: 38304
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 38291
Number of HSP's gapped (non-prelim): 5
length of query: 859
length of database: 168,382,221
effective HSP length: 125
effective length of query: 734
effective length of database: 98,386,596
effective search space: 72215761464
effective search space used: 72215761464
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 99 (42.7 bits)