BLASTP 2.2.6 [Apr-09-2003]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: gbbct 
           559,965 sequences; 168,382,221 total letters

Query= 5251
         (88 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG03402.1|AE004441_3  (AE004441) hypothetical protein [P...   179   4e-45 

>gb|AAG03402.1|AE004441_3 (AE004441) hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 88

 Score =  179 bits (453), Expect = 4e-45
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MDNQRQYPRTPLKCRIRISHPLFGELMAQTRDLSDTGVYVKHPDLTQLPTGSVVTGQVQD 60
          MDNQRQYPRTPLKCRIRISHPLFGELMAQTRDLSDTGVYVKHPDLTQLPTGSVVTGQVQD
Sbjct: 1  MDNQRQYPRTPLKCRIRISHPLFGELMAQTRDLSDTGVYVKHPDLTQLPTGSVVTGQVQD 60

Query: 61 LPIDAPILQMEVVRVDAEGVGLRFLSEA 88
          LPIDAPILQMEVVRVDAEGVGLRFLSEA
Sbjct: 61 LPIDAPILQMEVVRVDAEGVGLRFLSEA 88



  Database: gbbct
    Posted date:  Sep 29, 2003  6:22 PM
  Number of letters in database: 35,829,034
  Number of sequences in database:  119,422
  
  Database: /blastdb/gbbct/gbbct2.aso
    Posted date:  Sep 29, 2003  6:23 PM
  Number of letters in database: 46,604,961
  Number of sequences in database:  153,703
  
  Database: /blastdb/gbbct/gbbct3.aso
    Posted date:  Sep 29, 2003  6:24 PM
  Number of letters in database: 37,964,456
  Number of sequences in database:  126,043
  
  Database: /blastdb/gbbct/gbbct4.aso
    Posted date:  Sep 29, 2003  6:29 PM
  Number of letters in database: 44,801,584
  Number of sequences in database:  150,186
  
  Database: /blastdb/gbbct/gbbct5.aso
    Posted date:  Sep 29, 2003  6:29 PM
  Number of letters in database: 3,182,186
  Number of sequences in database:  10,611
  
Lambda     K      H
   0.321    0.139    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,383,478
Number of Sequences: 559965
Number of extensions: 1049514
Number of successful extensions: 2342
Number of sequences better than 1.0e-02: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2341
Number of HSP's gapped (non-prelim): 1
length of query: 88
length of database: 168,382,221
effective HSP length: 64
effective length of query: 24
effective length of database: 132,544,461
effective search space: 3181067064
effective search space used: 3181067064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 88 (38.5 bits)