BLASTP 2.2.6 [Apr-09-2003]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: gbbct 
           559,965 sequences; 168,382,221 total letters



Query= 5109 (105 letters)

Distribution of 16 Blast Hits on the Query Sequence




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG03405.1|AE004441_6  (AE004441) hypothetical protein [P...   206   2e-53 
gb|AAN65698.1|AE016196_9  (AE016774) TPR domain protein [Pse...   148   7e-36 
emb|CAE33376.1|  (BX640445) conserved hypothetical protein [...   114   1e-25 
emb|CAE38207.1|  (BX640431) conserved hypothetical protein [...   114   1e-25 
emb|CAE41600.1|  (BX640414) conserved hypothetical protein [...   114   1e-25 
gb|AAL45536.1|  (AE009403) conserved hypothetical protein [A...    89   4e-18 
gb|AAK88708.1|  (AE008211) AGR_L_275p [Agrobacterium tumefac...    89   4e-18 
gb|AAC07377.1|  (AE000739) putative protein [Aquifex aeolicu...    47   3e-05 
gb|AAC98286.1|  (AF076221) unknown [Myxococcus xanthus]            45   6e-05 
emb|CAD73037.1|  (BX294138) conserved hypothetical protein [...    42   7e-04 
gb|AAM30297.1|  (AE013285) conserved protein [Methanosarcina...    40   0.003 
gb|AAM07059.1|  (AE011082) TPR-domain containing protein [Me...    40   0.003 
dbj|BAA30956.1|  (AP000007) 338aa long hypothetical protein ...    39   0.004 
gb|AAB91297.1|  (AE001112) A. fulgidus predicted coding regi...    38   0.010 
gb|AAC65909.1|  (AE001263) conserved hypothetical protein [T...    38   0.010 
>gb|AAG03405.1|AE004441_6 (AE004441) hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 105

 Score =  206 bits (524), Expect = 2e-53
 Identities = 102/105 (97%), Positives = 102/105 (97%)

Query: 1   MMIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKA 60
           MMIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERA EHLQRCVEQDP YSAGWKLLGKA
Sbjct: 1   MMIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERAAEHLQRCVEQDPKYSAGWKLLGKA 60

Query: 61  RQAAGDLAGARQAWEQGLAAAATHGDKQAEKEMTVFLRKLDRART 105
           RQAAGDLAGARQAWEQGLA AATHGDKQAEKEMTVFLRKLDRART
Sbjct: 61  RQAAGDLAGARQAWEQGLATAATHGDKQAEKEMTVFLRKLDRART 105
>gb|AAN65698.1|AE016196_9 (AE016774) TPR domain protein [Pseudomonas putida KT2440]
          Length = 104

 Score =  148 bits (373), Expect = 7e-36
 Identities = 72/101 (71%), Positives = 80/101 (79%)

Query: 2   MIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKAR 61
           M E LEKMLAKGVDN LLRFGLGK +LD G+   A  HL RCVEQDP YSA WKLLGKA 
Sbjct: 1   MRESLEKMLAKGVDNPLLRFGLGKAWLDEGNGAEAAVHLARCVEQDPKYSAAWKLLGKAY 60

Query: 62  QAAGDLAGARQAWEQGLAAAATHGDKQAEKEMTVFLRKLDR 102
           Q  G+LA AR+AWE G+ AA  HGDKQAEKEMTVFL+KL++
Sbjct: 61  QLQGELAAARKAWEDGIVAAQAHGDKQAEKEMTVFLKKLNK 101
>emb|CAE33376.1| (BX640445) conserved hypothetical protein [Bordetella
           bronchiseptica]
          Length = 111

 Score =  114 bits (284), Expect = 1e-25
 Identities = 58/101 (57%), Positives = 68/101 (67%)

Query: 2   MIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKAR 61
           M E LE MLA+G DN LLRF LGK Y +    + A  HL+  ++ DPTYS  WK LGK  
Sbjct: 4   MTERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 62  QAAGDLAGARQAWEQGLAAAATHGDKQAEKEMTVFLRKLDR 102
           Q  GD AGARQAWE GLAAA + GD+Q  KE+ VFLR+L R
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104
>emb|CAE38207.1| (BX640431) conserved hypothetical protein [Bordetella
           parapertussis]
          Length = 107

 Score =  114 bits (284), Expect = 1e-25
 Identities = 58/101 (57%), Positives = 68/101 (67%)

Query: 2   MIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKAR 61
           M E LE MLA+G DN LLRF LGK Y +    + A  HL+  ++ DPTYS  WK LGK  
Sbjct: 4   MTERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 62  QAAGDLAGARQAWEQGLAAAATHGDKQAEKEMTVFLRKLDR 102
           Q  GD AGARQAWE GLAAA + GD+Q  KE+ VFLR+L R
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104
>emb|CAE41600.1| (BX640414) conserved hypothetical protein [Bordetella pertussis]
          Length = 111

 Score =  114 bits (284), Expect = 1e-25
 Identities = 58/101 (57%), Positives = 68/101 (67%)

Query: 2   MIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKAR 61
           M E LE MLA+G DN LLRF LGK Y +    + A  HL+  ++ DPTYS  WK LGK  
Sbjct: 4   MTERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 62  QAAGDLAGARQAWEQGLAAAATHGDKQAEKEMTVFLRKLDR 102
           Q  GD AGARQAWE GLAAA + GD+Q  KE+ VFLR+L R
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104
>gb|AAL45536.1| (AE009403) conserved hypothetical protein [Agrobacterium
           tumefaciens str. C58 (U. Washington)]
          Length = 107

 Score = 89.4 bits (220), Expect = 4e-18
 Identities = 45/99 (45%), Positives = 60/99 (60%)

Query: 2   MIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKAR 61
           MIE L K+L  G D+ +LRF L K  +D    E A +HLQ  + Q+P YSA W  LG+ R
Sbjct: 1   MIEKLMKVLESGRDSPVLRFSLAKALMDTRQFEDAAQHLQEAIRQNPDYSAVWAALGECR 60

Query: 62  QAAGDLAGARQAWEQGLAAAATHGDKQAEKEMTVFLRKL 100
           +  GD  GA  AW +G+A A   GD QA+++M V  R+L
Sbjct: 61  ERLGDHEGAAAAWIEGVAVAIRRGDIQAKRQMEVRFRRL 99
>gb|AAK88708.1| (AE008211) AGR_L_275p [Agrobacterium tumefaciens str. C58 (Cereon)]
          Length = 129

 Score = 89.4 bits (220), Expect = 4e-18
 Identities = 45/99 (45%), Positives = 60/99 (60%)

Query: 2   MIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKAR 61
           MIE L K+L  G D+ +LRF L K  +D    E A +HLQ  + Q+P YSA W  LG+ R
Sbjct: 23  MIEKLMKVLESGRDSPVLRFSLAKALMDTRQFEDAAQHLQEAIRQNPDYSAVWAALGECR 82

Query: 62  QAAGDLAGARQAWEQGLAAAATHGDKQAEKEMTVFLRKL 100
           +  GD  GA  AW +G+A A   GD QA+++M V  R+L
Sbjct: 83  ERLGDHEGAAAAWIEGVAVAIRRGDIQAKRQMEVRFRRL 121
>gb|AAC07377.1| (AE000739) putative protein [Aquifex aeolicus VF5]
          Length = 131

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 24/94 (25%), Positives = 44/94 (46%)

Query: 7   EKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGD 66
           + +L K  DN ++ + LG  Y    D E A +HL+R +E      A ++ L K  +  G+
Sbjct: 33  KSLLEKNPDNPMVHYSLGLEYFKVKDYENAIKHLERYLELQEDEGAAYRTLAKCYEELGE 92

Query: 67  LAGARQAWEQGLAAAATHGDKQAEKEMTVFLRKL 100
              A +  E+G+  A  +      +E   ++ +L
Sbjct: 93  FQKAIEVLEEGIRQAMKYNHPSMAQEYQQWIEEL 126
>gb|AAC98286.1| (AF076221) unknown [Myxococcus xanthus]
          Length = 222

 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 28/91 (30%), Positives = 42/91 (46%)

Query: 3   IEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQ 62
           +E  +KM+    D+ +  F LGK YL+      A + L+  V  DPTY+A    LG A  
Sbjct: 124 LEQFKKMVVDFPDSPMSHFSLGKLYLERRQYPEAAQALESAVRLDPTYAAAMVALGDAWA 183

Query: 63  AAGDLAGARQAWEQGLAAAATHGDKQAEKEM 93
            AG+   AR+   +    A   G     +E+
Sbjct: 184 GAGESDKAREVLGRAREHALAQGHPGLAEEI 214
>emb|CAD73037.1| (BX294138) conserved hypothetical protein [Pirellula sp.]
          Length = 156

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 27/97 (27%), Positives = 39/97 (40%)

Query: 4   EGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQA 63
           E +E MLA    +  LR+ L   Y   GD E +   L+     DP Y   + +  +    
Sbjct: 51  EKIEAMLADDPTDTFLRYSLAMEYRSEGDHETSLVKLRDLFADDPPYVPAFFMAAQQLVD 110

Query: 64  AGDLAGARQAWEQGLAAAATHGDKQAEKEMTVFLRKL 100
            G +  AR     G+  A T  D  A  EM+  L  +
Sbjct: 111 LGRIDEARAILRDGIEQARTQNDSHAAAEMSELLSSI 147
>gb|AAM30297.1| (AE013285) conserved protein [Methanosarcina mazei Goe1]
          Length = 1024

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 24/89 (26%), Positives = 39/89 (43%)

Query: 3   IEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQ 62
           +E  EK LA    +A    G  K YL  G    A    ++ +E +P+ +  W+  GK  +
Sbjct: 169 LEAFEKTLALEPSHAGAWEGKAKAYLSLGRRREALRACEKAIELEPSSAGAWETQGKILK 228

Query: 63  AAGDLAGARQAWEQGLAAAATHGDKQAEK 91
             G    A  A+E+ L     + + + EK
Sbjct: 229 GIGRREEALGAFEKSLILEPMNAENRLEK 257

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 21/73 (28%), Positives = 35/73 (47%)

Query: 3   IEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQ 62
           ++  E+ LA G +N+    G+G+ Y + GD  RA E  ++ +  D   +  W   G A  
Sbjct: 339 MKAYERALALGTENSCTLSGIGEIYYELGDLTRALEFFEQALSLDIENAFAWNGKGNALC 398

Query: 63  AAGDLAGARQAWE 75
             G    A +A+E
Sbjct: 399 KLGKYREALEAYE 411
>gb|AAM07059.1| (AE011082) TPR-domain containing protein [Methanosarcina
           acetivorans str. C2A] [Methanosarcina acetivorans C2A]
          Length = 1004

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 11/77 (14%)

Query: 3   IEGLEKMLAKGVDNALLRF--GLGKGYLDAGDAERATEHLQRCVEQDPTYS-----AGWK 55
           +E  EK LA   DN   R+  GL  GYL+    ERA E  +R +E+DP +S     +G  
Sbjct: 51  LEAFEKALAFDPDNVSARYFKGLTLGYLNL--PERALEAFERVLEKDPEHSGALYYSGLA 108

Query: 56  L--LGKARQAAGDLAGA 70
           L  LGK  +AA  L+GA
Sbjct: 109 LNQLGKHTEAASALSGA 125
>dbj|BAA30956.1| (AP000007) 338aa long hypothetical protein [Pyrococcus horikoshii]
          Length = 338

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 30  AGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWEQGL 78
           AGD ERA + L+R  +++P +   W+ + K  +  GD   AR+AWE+ L
Sbjct: 199 AGDMERAAKALERYAQEEPWF---WEDVAKLYEELGDEEKAREAWEKAL 244
>gb|AAB91297.1| (AE001112) A. fulgidus predicted coding region AF2369
           [Archaeoglobus fulgidus DSM 4304]
          Length = 329

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 27  YLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWEQGL 78
           Y  AG+  RA E L+R  E++P +   W+ + K  +  GD   A++AW++ L
Sbjct: 195 YKKAGEMRRAAECLERYAEEEPWF---WEDVAKIYEEIGDSENAKKAWQRAL 243
>gb|AAC65909.1| (AE001263) conserved hypothetical protein [Treponema pallidum]
          Length = 478

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 15/113 (13%)

Query: 7   EKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGD 66
           E+ +A   D       LG  Y + G AE+A EH QR V+  P Y   ++ LG        
Sbjct: 274 ERAVALSADAYFAHIYLGGIYDELGRAEKAIEHYQRAVQLYPKYHFSFESLGVLFWEQQR 333

Query: 67  LAGARQAWEQGLAAAATH---------------GDKQAEKEMTVFLRKLDRAR 104
              AR+A+   L  A T+                  +A+  M  F+R +DR R
Sbjct: 334 WEEAREAFATALTYAPTNISYALMTALCLCQMGQAHKAQHFMRTFIRTVDRTR 386
  Database: gbbct
    Posted date:  Sep 29, 2003  6:22 PM
  Number of letters in database: 35,829,034
  Number of sequences in database:  119,422
  
  Database: /blastdb/gbbct/gbbct2.aso
    Posted date:  Sep 29, 2003  6:23 PM
  Number of letters in database: 46,604,961
  Number of sequences in database:  153,703
  
  Database: /blastdb/gbbct/gbbct3.aso
    Posted date:  Sep 29, 2003  6:24 PM
  Number of letters in database: 37,964,456
  Number of sequences in database:  126,043
  
  Database: /blastdb/gbbct/gbbct4.aso
    Posted date:  Sep 29, 2003  6:29 PM
  Number of letters in database: 44,801,584
  Number of sequences in database:  150,186
  
  Database: /blastdb/gbbct/gbbct5.aso
    Posted date:  Sep 29, 2003  6:29 PM
  Number of letters in database: 3,182,186
  Number of sequences in database:  10,611
  
Lambda     K      H
   0.317    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,175,817
Number of Sequences: 559965
Number of extensions: 1321474
Number of successful extensions: 5004
Number of sequences better than 1.0e-02: 15
Number of HSP's better than  0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4979
Number of HSP's gapped (non-prelim): 31
length of query: 105
length of database: 168,382,221
effective HSP length: 81
effective length of query: 24
effective length of database: 123,025,056
effective search space: 2952601344
effective search space used: 2952601344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 87 (38.1 bits)