Score E
Sequences producing significant alignments: (bits) Value
gb|AAG03405.1|AE004441_6 (AE004441) hypothetical protein [P... 206 2e-53
gb|AAN65698.1|AE016196_9 (AE016774) TPR domain protein [Pse... 148 7e-36
emb|CAE33376.1| (BX640445) conserved hypothetical protein [... 114 1e-25
emb|CAE38207.1| (BX640431) conserved hypothetical protein [... 114 1e-25
emb|CAE41600.1| (BX640414) conserved hypothetical protein [... 114 1e-25
gb|AAL45536.1| (AE009403) conserved hypothetical protein [A... 89 4e-18
gb|AAK88708.1| (AE008211) AGR_L_275p [Agrobacterium tumefac... 89 4e-18
gb|AAC07377.1| (AE000739) putative protein [Aquifex aeolicu... 47 3e-05
gb|AAC98286.1| (AF076221) unknown [Myxococcus xanthus] 45 6e-05
emb|CAD73037.1| (BX294138) conserved hypothetical protein [... 42 7e-04
gb|AAM30297.1| (AE013285) conserved protein [Methanosarcina... 40 0.003
gb|AAM07059.1| (AE011082) TPR-domain containing protein [Me... 40 0.003
dbj|BAA30956.1| (AP000007) 338aa long hypothetical protein ... 39 0.004
gb|AAB91297.1| (AE001112) A. fulgidus predicted coding regi... 38 0.010
gb|AAC65909.1| (AE001263) conserved hypothetical protein [T... 38 0.010
>gb|AAG03405.1|AE004441_6 (AE004441) hypothetical protein [Pseudomonas aeruginosa PAO1]
Length = 105
Score = 206 bits (524), Expect = 2e-53
Identities = 102/105 (97%), Positives = 102/105 (97%)
Query: 1 MMIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKA 60
MMIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERA EHLQRCVEQDP YSAGWKLLGKA
Sbjct: 1 MMIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERAAEHLQRCVEQDPKYSAGWKLLGKA 60
Query: 61 RQAAGDLAGARQAWEQGLAAAATHGDKQAEKEMTVFLRKLDRART 105
RQAAGDLAGARQAWEQGLA AATHGDKQAEKEMTVFLRKLDRART
Sbjct: 61 RQAAGDLAGARQAWEQGLATAATHGDKQAEKEMTVFLRKLDRART 105
>gb|AAN65698.1|AE016196_9 (AE016774) TPR domain protein [Pseudomonas putida KT2440]
Length = 104
Score = 148 bits (373), Expect = 7e-36
Identities = 72/101 (71%), Positives = 80/101 (79%)
Query: 2 MIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKAR 61
M E LEKMLAKGVDN LLRFGLGK +LD G+ A HL RCVEQDP YSA WKLLGKA
Sbjct: 1 MRESLEKMLAKGVDNPLLRFGLGKAWLDEGNGAEAAVHLARCVEQDPKYSAAWKLLGKAY 60
Query: 62 QAAGDLAGARQAWEQGLAAAATHGDKQAEKEMTVFLRKLDR 102
Q G+LA AR+AWE G+ AA HGDKQAEKEMTVFL+KL++
Sbjct: 61 QLQGELAAARKAWEDGIVAAQAHGDKQAEKEMTVFLKKLNK 101
>emb|CAE33376.1| (BX640445) conserved hypothetical protein [Bordetella
bronchiseptica]
Length = 111
Score = 114 bits (284), Expect = 1e-25
Identities = 58/101 (57%), Positives = 68/101 (67%)
Query: 2 MIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKAR 61
M E LE MLA+G DN LLRF LGK Y + + A HL+ ++ DPTYS WK LGK
Sbjct: 4 MTERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 62 QAAGDLAGARQAWEQGLAAAATHGDKQAEKEMTVFLRKLDR 102
Q GD AGARQAWE GLAAA + GD+Q KE+ VFLR+L R
Sbjct: 64 QGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104
>emb|CAE38207.1| (BX640431) conserved hypothetical protein [Bordetella
parapertussis]
Length = 107
Score = 114 bits (284), Expect = 1e-25
Identities = 58/101 (57%), Positives = 68/101 (67%)
Query: 2 MIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKAR 61
M E LE MLA+G DN LLRF LGK Y + + A HL+ ++ DPTYS WK LGK
Sbjct: 4 MTERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 62 QAAGDLAGARQAWEQGLAAAATHGDKQAEKEMTVFLRKLDR 102
Q GD AGARQAWE GLAAA + GD+Q KE+ VFLR+L R
Sbjct: 64 QGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104
>emb|CAE41600.1| (BX640414) conserved hypothetical protein [Bordetella pertussis]
Length = 111
Score = 114 bits (284), Expect = 1e-25
Identities = 58/101 (57%), Positives = 68/101 (67%)
Query: 2 MIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKAR 61
M E LE MLA+G DN LLRF LGK Y + + A HL+ ++ DPTYS WK LGK
Sbjct: 4 MTERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 62 QAAGDLAGARQAWEQGLAAAATHGDKQAEKEMTVFLRKLDR 102
Q GD AGARQAWE GLAAA + GD+Q KE+ VFLR+L R
Sbjct: 64 QGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104
>gb|AAL45536.1| (AE009403) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 107
Score = 89.4 bits (220), Expect = 4e-18
Identities = 45/99 (45%), Positives = 60/99 (60%)
Query: 2 MIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKAR 61
MIE L K+L G D+ +LRF L K +D E A +HLQ + Q+P YSA W LG+ R
Sbjct: 1 MIEKLMKVLESGRDSPVLRFSLAKALMDTRQFEDAAQHLQEAIRQNPDYSAVWAALGECR 60
Query: 62 QAAGDLAGARQAWEQGLAAAATHGDKQAEKEMTVFLRKL 100
+ GD GA AW +G+A A GD QA+++M V R+L
Sbjct: 61 ERLGDHEGAAAAWIEGVAVAIRRGDIQAKRQMEVRFRRL 99
>gb|AAK88708.1| (AE008211) AGR_L_275p [Agrobacterium tumefaciens str. C58 (Cereon)]
Length = 129
Score = 89.4 bits (220), Expect = 4e-18
Identities = 45/99 (45%), Positives = 60/99 (60%)
Query: 2 MIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKAR 61
MIE L K+L G D+ +LRF L K +D E A +HLQ + Q+P YSA W LG+ R
Sbjct: 23 MIEKLMKVLESGRDSPVLRFSLAKALMDTRQFEDAAQHLQEAIRQNPDYSAVWAALGECR 82
Query: 62 QAAGDLAGARQAWEQGLAAAATHGDKQAEKEMTVFLRKL 100
+ GD GA AW +G+A A GD QA+++M V R+L
Sbjct: 83 ERLGDHEGAAAAWIEGVAVAIRRGDIQAKRQMEVRFRRL 121
>gb|AAC07377.1| (AE000739) putative protein [Aquifex aeolicus VF5]
Length = 131
Score = 46.6 bits (109), Expect = 3e-05
Identities = 24/94 (25%), Positives = 44/94 (46%)
Query: 7 EKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGD 66
+ +L K DN ++ + LG Y D E A +HL+R +E A ++ L K + G+
Sbjct: 33 KSLLEKNPDNPMVHYSLGLEYFKVKDYENAIKHLERYLELQEDEGAAYRTLAKCYEELGE 92
Query: 67 LAGARQAWEQGLAAAATHGDKQAEKEMTVFLRKL 100
A + E+G+ A + +E ++ +L
Sbjct: 93 FQKAIEVLEEGIRQAMKYNHPSMAQEYQQWIEEL 126
>gb|AAC98286.1| (AF076221) unknown [Myxococcus xanthus]
Length = 222
Score = 45.4 bits (106), Expect = 6e-05
Identities = 28/91 (30%), Positives = 42/91 (46%)
Query: 3 IEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQ 62
+E +KM+ D+ + F LGK YL+ A + L+ V DPTY+A LG A
Sbjct: 124 LEQFKKMVVDFPDSPMSHFSLGKLYLERRQYPEAAQALESAVRLDPTYAAAMVALGDAWA 183
Query: 63 AAGDLAGARQAWEQGLAAAATHGDKQAEKEM 93
AG+ AR+ + A G +E+
Sbjct: 184 GAGESDKAREVLGRAREHALAQGHPGLAEEI 214
>emb|CAD73037.1| (BX294138) conserved hypothetical protein [Pirellula sp.]
Length = 156
Score = 42.0 bits (97), Expect = 7e-04
Identities = 27/97 (27%), Positives = 39/97 (40%)
Query: 4 EGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQA 63
E +E MLA + LR+ L Y GD E + L+ DP Y + + +
Sbjct: 51 EKIEAMLADDPTDTFLRYSLAMEYRSEGDHETSLVKLRDLFADDPPYVPAFFMAAQQLVD 110
Query: 64 AGDLAGARQAWEQGLAAAATHGDKQAEKEMTVFLRKL 100
G + AR G+ A T D A EM+ L +
Sbjct: 111 LGRIDEARAILRDGIEQARTQNDSHAAAEMSELLSSI 147
>gb|AAM30297.1| (AE013285) conserved protein [Methanosarcina mazei Goe1]
Length = 1024
Score = 40.0 bits (92), Expect = 0.003
Identities = 24/89 (26%), Positives = 39/89 (43%)
Query: 3 IEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQ 62
+E EK LA +A G K YL G A ++ +E +P+ + W+ GK +
Sbjct: 169 LEAFEKTLALEPSHAGAWEGKAKAYLSLGRRREALRACEKAIELEPSSAGAWETQGKILK 228
Query: 63 AAGDLAGARQAWEQGLAAAATHGDKQAEK 91
G A A+E+ L + + + EK
Sbjct: 229 GIGRREEALGAFEKSLILEPMNAENRLEK 257
Score = 38.1 bits (87), Expect = 0.010
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 3 IEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQ 62
++ E+ LA G +N+ G+G+ Y + GD RA E ++ + D + W G A
Sbjct: 339 MKAYERALALGTENSCTLSGIGEIYYELGDLTRALEFFEQALSLDIENAFAWNGKGNALC 398
Query: 63 AAGDLAGARQAWE 75
G A +A+E
Sbjct: 399 KLGKYREALEAYE 411
>gb|AAM07059.1| (AE011082) TPR-domain containing protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 1004
Score = 40.0 bits (92), Expect = 0.003
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 11/77 (14%)
Query: 3 IEGLEKMLAKGVDNALLRF--GLGKGYLDAGDAERATEHLQRCVEQDPTYS-----AGWK 55
+E EK LA DN R+ GL GYL+ ERA E +R +E+DP +S +G
Sbjct: 51 LEAFEKALAFDPDNVSARYFKGLTLGYLNL--PERALEAFERVLEKDPEHSGALYYSGLA 108
Query: 56 L--LGKARQAAGDLAGA 70
L LGK +AA L+GA
Sbjct: 109 LNQLGKHTEAASALSGA 125
>dbj|BAA30956.1| (AP000007) 338aa long hypothetical protein [Pyrococcus horikoshii]
Length = 338
Score = 39.3 bits (90), Expect = 0.004
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 30 AGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWEQGL 78
AGD ERA + L+R +++P + W+ + K + GD AR+AWE+ L
Sbjct: 199 AGDMERAAKALERYAQEEPWF---WEDVAKLYEELGDEEKAREAWEKAL 244
>gb|AAB91297.1| (AE001112) A. fulgidus predicted coding region AF2369
[Archaeoglobus fulgidus DSM 4304]
Length = 329
Score = 38.1 bits (87), Expect = 0.010
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 27 YLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWEQGL 78
Y AG+ RA E L+R E++P + W+ + K + GD A++AW++ L
Sbjct: 195 YKKAGEMRRAAECLERYAEEEPWF---WEDVAKIYEEIGDSENAKKAWQRAL 243
>gb|AAC65909.1| (AE001263) conserved hypothetical protein [Treponema pallidum]
Length = 478
Score = 38.1 bits (87), Expect = 0.010
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 15/113 (13%)
Query: 7 EKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGD 66
E+ +A D LG Y + G AE+A EH QR V+ P Y ++ LG
Sbjct: 274 ERAVALSADAYFAHIYLGGIYDELGRAEKAIEHYQRAVQLYPKYHFSFESLGVLFWEQQR 333
Query: 67 LAGARQAWEQGLAAAATH---------------GDKQAEKEMTVFLRKLDRAR 104
AR+A+ L A T+ +A+ M F+R +DR R
Sbjct: 334 WEEAREAFATALTYAPTNISYALMTALCLCQMGQAHKAQHFMRTFIRTVDRTR 386
Database: gbbct
Posted date: Sep 29, 2003 6:22 PM
Number of letters in database: 35,829,034
Number of sequences in database: 119,422
Database: /blastdb/gbbct/gbbct2.aso
Posted date: Sep 29, 2003 6:23 PM
Number of letters in database: 46,604,961
Number of sequences in database: 153,703
Database: /blastdb/gbbct/gbbct3.aso
Posted date: Sep 29, 2003 6:24 PM
Number of letters in database: 37,964,456
Number of sequences in database: 126,043
Database: /blastdb/gbbct/gbbct4.aso
Posted date: Sep 29, 2003 6:29 PM
Number of letters in database: 44,801,584
Number of sequences in database: 150,186
Database: /blastdb/gbbct/gbbct5.aso
Posted date: Sep 29, 2003 6:29 PM
Number of letters in database: 3,182,186
Number of sequences in database: 10,611
Lambda K H
0.317 0.132 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,175,817
Number of Sequences: 559965
Number of extensions: 1321474
Number of successful extensions: 5004
Number of sequences better than 1.0e-02: 15
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4979
Number of HSP's gapped (non-prelim): 31
length of query: 105
length of database: 168,382,221
effective HSP length: 81
effective length of query: 24
effective length of database: 123,025,056
effective search space: 2952601344
effective search space used: 2952601344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 87 (38.1 bits)