ViewGene
Locus Name:
GeneID:
Location:

GeneID:4102
TrivialName: PA14_00070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00070
PAO1 Ortholog Locus:PA0006
Sequence Length:537
Protein Length:178
Start: 8339
Stop: 7803
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03396.1|AE004440_6 (AE004440) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 177/178 (99%), Positives = 178/178 (100%)
Sequence:
ATGTCCCGTTCCCTGCTGATTCTCGACCGCGATGGAGTCATCAACCTCGACTCCGACGATTACATCAAGACC
CTCGACGAGTGGATCCCCATCCCCAGCTCGATCGAGGCCATCGCCCGCCTGAGCCAGGCCGGCTGGACCGTC
GCGGTGGCTACCAACCAGTCCGGCATCGCCCGTGGCTATTACGACCTGGCAGTGCTCGAGGCCATGCATGCG
CGCTTGCGCGAACTGGTCGCGGAGCAGGGCGGCGAGGTCGGCCTCATCGTCTATTGTCCGCATGGACCGGAC
GACGGTTGCGACTGCCGCAAGCCGAAGCCGGGTATGCTGCGGCAGATCGGCAAGCACTACGGGGTCGATCTG
TCGGGTATCTGGTTCGTCGGCGACAGCATCGGTGACCTGGAGGCGGCGCGGGCCGTCGATTGTCAGCCGGTG
TTGGTAAAGACCGGAAAAGGTGTACGTACGCTGGGCAAGCCCTTGCCAGAGGGCACCCTGATATTCGACGAT
CTGGCGGCAGTCGCCAGCGCATTACTTCAGTAA
Translation:
MSRSLLILDRDGVINLDSDDYIKTLDEWIPIPSSIEAIARLSQAGWTVAVATNQSGIARGYYDLAVLEAMHA
RLRELVAEQGGEVGLIVYCPHGPDDGCDCRKPKPGMLRQIGKHYGVDLSGIWFVGDSIGDLEAARAVDCQPV
LVKTGKGVRTLGKPLPEGTLIFDDLAAVASALLQ*
AnnotationID:4109GeneID:4102
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 10:10:10
Gene Name:
Confidence Code:3
GeneProduct:putative histidinol-phosphatase
Cell Localization:()
Synonyms:PA0006
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0241
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53740.1| (AE016856) histidinol-phosphate phosphatase family protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 183

 Score =  284 bits (726), Expect = 2e-76
 Identities = 135/173 (78%), Positives = 153/173 (88%)

>gb|AAN65693.1|AE016196_4 (AE016774) histidinol-phosphatase, putatitve [Pseudomonas putida
           KT2440]
          Length = 175

 Score =  284 bits (726), Expect = 2e-76
 Identities = 138/173 (79%), Positives = 151/173 (87%)

>emb|CAE40414.1| (BX640411) putative haloacid dehalogenase-like hydrolase
           [Bordetella pertussis]
          Length = 179

 Score =  210 bits (535), Expect = 3e-54
 Identities = 102/175 (58%), Positives = 129/175 (73%), Gaps = 1/175 (0%)






 
Structural Features:
COG0241, HisB, Histidinol phosphatase and related phosphatases 
[Amino acid transport and metabolism]
CD-Length = 181 residues,  94.5% aligned
Score =  199 bits (507), Expect = 2e-52
Identities = 79/173 (45%), Positives = 108/173 (62%), Gaps = 2/173 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8206




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25349




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33373




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4102_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4102
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6345
                           PA0006_tr
                           translation of PA0006
                           178
                           99.43
                           99.99
                           0
                           921.0
     

     
     
174468
                           gb|AAG03396.1|AE004440_6
                           (AE004440) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           178
                           99.43
                           99.99
                           0
                           921.0
     

     
     
174471
                           gb|AAN65693.1|AE016196_4
                           (AE016774) histidinol-phosphatase, putatitve [Pseudomonas putida KT2440]
                           178
                           77.52
                           84.83
                           3
                           725.0
     

     
     
174470
                           gb|AAO53740.1|
                           (AE016856) histidinol-phosphate phosphatase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           185
                           72.97
                           82.70
                           9
                           725.0
     

     
     
174469
                           gb|AAG30825.1|AF286536_2
                           (AF286536) HisB-like protein [Pseudomonas fluorescens]
                           213
                           66.66
                           75.11
                           35
                           765.0
     

     






      

          
GC ORFID: 47104How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0006Glimmer Score: 

          
Start: 5809676Stop: 5809140

          
Length: 537


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0006 translation of PA0006Homolog Bit Score 359.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4105 (ORF: BLASTX 279.0), t_PA0006 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCGTTCCCTGCTGATTCTCGACCGCGATGGAGTCATCAACCTCGACTCCGACGATTACATCAAGACC 
CTCGACGAGTGGATCCCCATCCCCAGCTCGATCGAGGCCATCGCCCGCCTGAGCCAGGCCGGCTGGACCGTC 
GCGGTGGCTACCAACCAGTCCGGCATCGCCCGTGGCTATTACGACCTGGCAGTGCTCGAGGCCATGCATGCG 
CGCTTGCGCGAACTGGTCGCGGAGCAGGGCGGCGAGGTCGGCCTCATCGTCTATTGTCCGCATGGACCGGAC 
GACGGTTGCGACTGCCGCAAGCCGAAGCCGGGTATGCTGCGGCAGATCGGCAAGCACTACGGGGTCGATCTG 
TCGGGTATCTGGTTCGTCGGCGACAGCATCGGTGACCTGGAGGCGGCGCGGGCCGTCGATTGTCAGCCGGTG 
TTGGTAAAGACCGGAAAAGGTGTACGTACGCTGGGCAAGCCCTTGCCAGAGGGCACCCTGATATTCGACGAT 
CTGGCGGCAGTCGCCAGCGCATTACTTCAGTAA