ViewGene
Locus Name:
GeneID:
Location:

GeneID:1714
TrivialName: PA14_44160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44160
PAO1 Ortholog Locus:PA1572
Sequence Length:1146
Protein Length:381
Start: 3930598
Stop: 3929453
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04961.1|AE004585_9 (AE004585) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 374/381 (98%), Positives = 379/381 (99%)
Sequence:
ATGGACATGTTTCGCCTGGGATTGGTGGTCAATCCCCTGGCCGGGCTGGGTGGCCCGGTCGCCTTGAAGGGC
AGCGACGGGGTGGCTGCCGAGGCCCTGGCCAGAGGCGCCGAACCACGTGCGCTGGAGCGCACCCGGATAGCC
CTGGAGTGCCTGTTGCCGCTGGTCGAGAAGATCGAGTTCCTGACCTTTCCCGGGGCCATGGGCGGCGAGTTG
CTCGAGCGCATGGGCTTCCGCCATCGCCTGCTCGGCGAGTGGCAGGGAGCGGTCAGCAGCGCGGCGGATACC
CGGTTGGCGGTCGAGCGTTTGCAGGAGGCCGGCGTCGCCCTGATCCTGTTCGCCGGTGGTGATGGCACAGCA
CGGGATGTTGCCGGGGTGGTGCGCGAGCAACAGCCGGTGCTCGGCATTCCGGCCGGGGTGAAGATCCACTCC
GGGGTCTATGCCATCAGTCCGCGCGCGGCCGGCGAATTGGCCAGGCGCCTGGTCGAGGGCGGCCTGGTGCGC
CTGGCCAGCGGCGAGGTGCGCGATCTCGACGAAGAGGCGCTGCGCGCCGGCCGCGTCGCCGCGCGTTGGTAC
GGCGAGATGACGGTGCCGGAGGAGGGCCACTTCATGCAGCACGTGAAGCAGGCAGGGATGGAGTCCGAGGAG
CTGGTGCTGGTGGACCTCGCCGATTGGCTGGCGGAAAGCTGGGAAGACGGCGTGCGTTATGTGCTCGGACCG
GGCTCGACCCTGCATGGCCTGGCGCGCAACCTCGGCCTGGAAACCACCCTGCTGGGCGTCGACGTGCTGGAG
AATGGCGCGGTGCTCGCCCGCGACGTCGACGAGGCGCGGCTGTTCGAACTGGTGGACGGTCATCCGGCGTTC
CTGCTGGTCACCGCCATCGGCGGCCAGGGCCACGTGATCGGTCGCGGCAACCAGCAGATCAGTCCCCGGGTG
TTGCGCGCCATCGGCCTGGAGCGCATGCGGGTGGTCGCCACCAAGCGCAAGCTGGGGACCCTCGGGGGCCGC
CCGTTGCTGGTCGACAGCGGCGACCCGGTGCTGGACGACAGCTTCCCGGACGCCATCCGGGTCTGGGCCGGC
TACAAGGAAGAACTGCTGTATCCGCTGGGATACGCGAAGGACCAGGACACGCCCGCGGGCGCTTAG
Translation:
MDMFRLGLVVNPLAGLGGPVALKGSDGVAAEALARGAEPRALERTRIALECLLPLVEKIEFLTFPGAMGGEL
LERMGFRHRLLGEWQGAVSSAADTRLAVERLQEAGVALILFAGGDGTARDVAGVVREQQPVLGIPAGVKIHS
GVYAISPRAAGELARRLVEGGLVRLASGEVRDLDEEALRAGRVAARWYGEMTVPEEGHFMQHVKQAGMESEE
LVLVDLADWLAESWEDGVRYVLGPGSTLHGLARNLGLETTLLGVDVLENGAVLARDVDEARLFELVDGHPAF
LLVTAIGGQGHVIGRGNQQISPRVLRAIGLERMRVVATKRKLGTLGGRPLLVDSGDPVLDDSFPDAIRVWAG
YKEELLYPLGYAKDQDTPAGA*
AnnotationID:1723GeneID:1714
AnnotatorUID: diggins
Modification Date/Time: 2005-05-30 12:12:14
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-NAD kinase
Cell Localization:()
Synonyms:PA1572
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01513
Secondary Functional Category(ies):putative enzyme
EC Number:2.7.1.23
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam01513, NAD_kinase, ATP-NAD kinase. 
CD-Length = 355 residues, 100.0% aligned
Score =  348 bits (894), Expect = 6e-97
Identities = 81/355 (22%), Positives = 121/355 (34%), Gaps = 90/355 (25%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3431




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20578




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37280




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1714_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1714
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3012
                           PA1572_tr
                           translation of PA1572
                           381
                           98.16
                           99.47
                           0
                           1910.0
     

     
     
93667
                           gb|AAG04961.1|AE004585_9
                           (AE004585) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           381
                           98.16
                           99.47
                           0
                           1910.0
     

     
     
93668
                           gb|AAN56085.1|AE015744_6
                           (AE015744) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           386
                           46.63
                           63.73
                           15
                           862.0
     

     
     
93671
                           gb|AAG19237.1|
                           (AE005019) Vng0764c [Halobacterium sp. NRC-1]
                           388
                           40.20
                           52.57
                           37
                           591.0
     

     
     
93670
                           dbj|BAA30787.1|
                           (AP000006) 377aa long hypothetical protein [Pyrococcus horikoshii]
                           400
                           39.75
                           55.00
                           42
                           601.0
     

     






      

          
GC ORFID: 44716How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1572Glimmer Score: 

          
Start: 1023311Stop: 1024456

          
Length: 1146


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1572 translation of PA1572Homolog Bit Score 740.0

          
Other Homologs:  t_PA1572 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACATGTTTCGCCTGGGATTGGTGGTCAATCCCCTGGCCGGGCTGGGTGGCCCGGTCGCCTTGAAGGGC 
AGCGACGGGGTGGCTGCCGAGGCCCTGGCCAGAGGCGCCGAACCACGTGCGCTGGAGCGCACCCGGATAGCC 
CTGGAGTGCCTGTTGCCGCTGGTCGAGAAGATCGAGTTCCTGACCTTTCCCGGGGCCATGGGCGGCGAGTTG 
CTCGAGCGCATGGGCTTCCGCCATCGCCTGCTCGGCGAGTGGCAGGGAGCGGTCAGCAGCGCGGCGGATACC 
CGGTTGGCGGTCGAGCGTTTGCAGGAGGCCGGCGTCGCCCTGATCCTGTTCGCCGGTGGTGATGGCACAGCA 
CGGGATGTTGCCGGGGTGGTGCGCGAGCAACAGCCGGTGCTCGGCATTCCGGCCGGGGTGAAGATCCACTCC 
GGGGTCTATGCCATCAGTCCGCGCGCGGCCGGCGAATTGGCCAGGCGCCTGGTCGAGGGCGGCCTGGTGCGC 
CTGGCCAGCGGCGAGGTGCGCGATCTCGACGAAGAGGCGCTGCGCGCCGGCCGCGTCGCCGCGCGTTGGTAC 
GGCGAGATGACGGTGCCGGAGGAGGGCCACTTCATGCAGCACGTGAAGCAGGCAGGGATGGAGTCCGAGGAG 
CTGGTGCTGGTGGACCTCGCCGATTGGCTGGCGGAAAGCTGGGAAGACGGCGTGCGTTATGTGCTCGGACCG 
GGCTCGACCCTGCATGGCCTGGCGCGCAACCTCGGCCTGGAAACCACCCTGCTGGGCGTCGACGTGCTGGAG 
AATGGCGCGGTGCTCGCCCGCGACGTCGACGAGGCGCGGCTGTTCGAACTGGTGGACGGTCATCCGGCGTTC 
CTGCTGGTCACCGCCATCGGCGGCCAGGGCCACGTGATCGGTCGCGGCAACCAGCAGATCAGTCCCCGGGTG 
TTGCGCGCCATCGGCCTGGAGCGCATGCGGGTGGTCGCCACCAAGCGCAAGCTGGGGACCCTCGGGGGCCGC 
CCGTTGCTGGTCGACAGCGGCGACCCGGTGCTGGACGACAGCTTCCCGGACGCCATCCGGGTCTGGGCCGGC 
TACAAGGAAGAACTGCTGTATCCGCTGGGATACGCGAAGGACCAGGACACGCCCGCGGGCGCTTAG