Program blastn blastp blastx tblastn tblastx Database gbbct (all) nr (blastp, blastx) arabidopsis_landsberg (blastn, tblastn, tblastx) arabidopsis_thaliana (blastn, tblastn, tblastx) caenorhabditis_elegans (blastn, tblastn, tblastx) homo_sampiens (blastn, tblastn, tblastx) pa14(blastn, tblastn, tblastx) pa14 old(blastn, tblastn, tblastx) pa14 proteins (blastp, blastx)
Enter here your input data as Sequence in FASTA format Accession or GI Or load it from disk
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Set subsequence: From       To
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
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