BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= (966 letters)

Distribution of 48 Blast Hits on the Query Sequence




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           626   e-179 
>GCTS_68 
          Length = 6534396

 Score =  626 bits (316), Expect = e-179
 Identities = 410/440 (93%), Gaps = 1/440 (0%)
 Strand = Plus / Minus

                                                                         
Query: 128   tacggcctcgcgccgctatcggtggcgcccgggcgacagcgccagggtctcggttcgcag 187
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56794 tacggcctcgcgccgctatcggtggcgcccgggcgacagcgccagggtctcggttcgcag 56735

                                                                         
Query: 188   ttggtccggcgcctgctcaccgagttgcgactgctgcccgcgggtggctgcgtggtactg 247
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56734 ttggtccggcgcctgctcaccgagttgcgactgctgcccgcgggtggctgcgtggtactg 56675

                                                                         
Query: 248   ggcgaaccgacctactactcgcgcttcggctttcgggtggaaagcggcctggcgttgccc 307
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56674 ggcgaaccgacctactactcgcgcttcggctttcgggtggaaagcggcctggcgttgccc 56615

                                                                         
Query: 308   ggcgttcccgccgaatacttccaggcaccatccttcgccggccggatgacgcgaggaata 367
             ||||||||||||||||||||||||||||  ||||||  ||| || ||| |||||||||||
Sbjct: 56614 ggcgttcccgccgaatacttccaggcacagtccttcagcgggcgcatggcgcgaggaata 56555

                                                                         
Query: 368   gtggcctctccacgccgcattcgacgcccgcgactgagccggaacgacagttgtcgctat 427
             ||||||| |||||||||||||||||||| |||||||||||||||||||||  | ||||||
Sbjct: 56554 gtggcct-tccacgccgcattcgacgccagcgactgagccggaacgacagcagccgctat 56496

                                                                         
Query: 428   gtcgccccctggtcgcgggctctatcgaactgtgtacccttctggatcagttccaccttg 487
             |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 56495 gtcgccccctggtcgcgggctcaatcgaactgggtacccttctggatcagttccaccttg 56436

                                                                         
Query: 488   ttcccgtcctggtcttccacgatagggatcacgcttcgtccttgttgcatcggtccggac 547
             |  |||||| ||||||| | ||  | ||||||||| ||||| || |||||||| |||| |
Sbjct: 56435 tagccgtccgggtcttcgaggaaggcgatcacgctgcgtccgtgctgcatcggcccggcc 56376

                                 
Query: 548   tcgagggagaccccatagcc 567
             ||| ||| ||||| ||||||
Sbjct: 56375 tcgcgggtgacccgatagcc 56356

 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 283     ggtggaaagcggcctgg 299
               |||||||||||||||||
Sbjct: 1946262 ggtggaaagcggcctgg 1946246

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 751    cttcggcgccgctttc 766
              ||||||||||||||||
Sbjct: 152455 cttcggcgccgctttc 152470

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 196    gcgcctgctcaccgag 211
              ||||||||||||||||
Sbjct: 661418 gcgcctgctcaccgag 661403

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 184     gcagttggtccggcgcctgc 203
               |||||||| |||||||||||
Sbjct: 1657150 gcagttggaccggcgcctgc 1657169

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 283     ggtggaaagcggcctg 298
               ||||||||||||||||
Sbjct: 2180777 ggtggaaagcggcctg 2180762

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 283     ggtggaaagcggcctg 298
               ||||||||||||||||
Sbjct: 3152952 ggtggaaagcggcctg 3152937

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 31/36 (86%)
 Strand = Plus / Minus

                                                   
Query: 466     cttctggatcagttccaccttgttcccgtcctggtc 501
               ||||||||||||||| | |||||  |||||| ||||
Sbjct: 3340359 cttctggatcagttcgatcttgtagccgtccgggtc 3340324

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 162     gacagcgccagggtct 177
               ||||||||||||||||
Sbjct: 4380916 gacagcgccagggtct 4380931

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 283     ggtggaaagcggcctg 298
               ||||||||||||||||
Sbjct: 4818885 ggtggaaagcggcctg 4818900

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 240     tggtactgggcgaaccgacc 259
               |||||| |||||||||||||
Sbjct: 5095571 tggtacagggcgaaccgacc 5095590

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 268     gcgcttcggctttcgg 283
               ||||||||||||||||
Sbjct: 5174332 gcgcttcggctttcgg 5174317

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 237     gcgtggtactgggcga 252
               ||||||||||||||||
Sbjct: 6354576 gcgtggtactgggcga 6354561

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 194     cggcgcctgctcaccg 209
               ||||||||||||||||
Sbjct: 6398811 cggcgcctgctcaccg 6398796

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 387    ttcgacgcccgcgac 401
              |||||||||||||||
Sbjct: 511885 ttcgacgcccgcgac 511899

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 196    gcgcctgctcaccga 210
              |||||||||||||||
Sbjct: 569195 gcgcctgctcaccga 569181

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 241    ggtactgggcgaacc 255
              |||||||||||||||
Sbjct: 702194 ggtactgggcgaacc 702180

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 297     tggcgttgcccggcg 311
               |||||||||||||||
Sbjct: 1047604 tggcgttgcccggcg 1047590

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 287     gaaagcggcctggcg 301
               |||||||||||||||
Sbjct: 1618986 gaaagcggcctggcg 1618972

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 291     gcggcctggcgttgc 305
               |||||||||||||||
Sbjct: 2058059 gcggcctggcgttgc 2058045

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 291     gcggcctggcgttgc 305
               |||||||||||||||
Sbjct: 2299632 gcggcctggcgttgc 2299618

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 191     gtccggcgcctgctc 205
               |||||||||||||||
Sbjct: 2561031 gtccggcgcctgctc 2561045

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 290     agcggcctggcgttg 304
               |||||||||||||||
Sbjct: 3043371 agcggcctggcgttg 3043385

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 196     gcgcctgctcaccga 210
               |||||||||||||||
Sbjct: 3294258 gcgcctgctcaccga 3294272

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 265     ctcgcgcttcggctt 279
               |||||||||||||||
Sbjct: 3428004 ctcgcgcttcggctt 3428018

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 160     gcgacagcgccaggg 174
               |||||||||||||||
Sbjct: 3437616 gcgacagcgccaggg 3437602

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 749     gtcttcggcgccgct 763
               |||||||||||||||
Sbjct: 3660369 gtcttcggcgccgct 3660355

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 306     ccggcgttcccgccg 320
               |||||||||||||||
Sbjct: 3732342 ccggcgttcccgccg 3732328

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 147     cggtggcgcccgggc 161
               |||||||||||||||
Sbjct: 4083727 cggtggcgcccgggc 4083713

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 395     ccgcgactgagccgg 409
               |||||||||||||||
Sbjct: 4092966 ccgcgactgagccgg 4092952

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 296     ctggcgttgcccggc 310
               |||||||||||||||
Sbjct: 4099995 ctggcgttgcccggc 4099981

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 308     ggcgttcccgccgaa 322
               |||||||||||||||
Sbjct: 4101919 ggcgttcccgccgaa 4101933

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 201     tgctcaccgagttgc 215
               |||||||||||||||
Sbjct: 4255757 tgctcaccgagttgc 4255771

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 197     cgcctgctcaccgag 211
               |||||||||||||||
Sbjct: 4284694 cgcctgctcaccgag 4284708

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 340     cttcgccggccggat 354
               |||||||||||||||
Sbjct: 4371096 cttcgccggccggat 4371110

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 291     gcggcctggcgttgc 305
               |||||||||||||||
Sbjct: 4721481 gcggcctggcgttgc 4721467

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 283     ggtggaaagcggcctggcg 301
               |||||| ||||||||||||
Sbjct: 4870974 ggtggatagcggcctggcg 4870956

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 164     cagcgccagggtctc 178
               |||||||||||||||
Sbjct: 5191597 cagcgccagggtctc 5191583

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 300     cgttgcccggcgttc 314
               |||||||||||||||
Sbjct: 5220300 cgttgcccggcgttc 5220314

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 340     cttcgccggccggat 354
               |||||||||||||||
Sbjct: 5232080 cttcgccggccggat 5232066

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 160     gcgacagcgccaggg 174
               |||||||||||||||
Sbjct: 5259011 gcgacagcgccaggg 5258997

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 223     gcccgcgggtggctgcgtg 241
               ||||||||||||| |||||
Sbjct: 5723926 gcccgcgggtggcggcgtg 5723908

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 290     agcggcctggcgttgcccg 308
               |||||| ||||||||||||
Sbjct: 5875699 agcggcgtggcgttgcccg 5875681

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 134     ctcgcgccgctatcg 148
               |||||||||||||||
Sbjct: 6056565 ctcgcgccgctatcg 6056579

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 198     gcctgctcaccgagt 212
               |||||||||||||||
Sbjct: 6070073 gcctgctcaccgagt 6070059

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 164     cagcgccagggtctc 178
               |||||||||||||||
Sbjct: 6386281 cagcgccagggtctc 6386295

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 165     agcgccagggtctcg 179
               |||||||||||||||
Sbjct: 6405775 agcgccagggtctcg 6405761

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 155     cccgggcgacagcgc 169
               |||||||||||||||
Sbjct: 6473050 cccgggcgacagcgc 6473036
  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5167
Number of Sequences: 1
Number of extensions: 5167
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of query: 966
length of database: 6,534,396
effective HSP length: 16
effective length of query: 950
effective length of database: 6,534,380
effective search space: 6207661000
effective search space used: 6207661000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)