BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= (1332 letters)

Distribution of 60 Blast Hits on the Query Sequence




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           341   1e-93 
>GCTS_68 
          Length = 6534396

 Score =  341 bits (172), Expect = 1e-93
 Identities = 202/212 (95%)
 Strand = Plus / Plus

                                                                           
Query: 205     cgcaacgtgaaggaggcgtcctgacatggccttctcgacccaggacagcgacgaagtcct 264
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6026997 cgcaacgtgaaggaggcgtcctgacatggccttctcgacccaggacagcgacgaagtcct 6027056

                                                                           
Query: 265     ttccgaaatcaacgtcaccccgctggtcgacgtgatgctggagctgctggtggagtttat 324
               ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct: 6027057 ttccgaaatcaacgtcaccccgctggtcgacgtgatgctggtgctgctggtggtgttcat 6027116

                                                                           
Query: 325     attcaccgcgccgctgctgaccaactcgatcccgatcaatctgccaaagaccgaatcggt 384
                 ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 6027117 cgtcaccgcgccgctgctgaccaactcgatcccgatcaacctgccgaagaccgaatcggt 6027176

                                               
Query: 385     ggcgccgccggagacgaaggatcccctggtgg 416
               ||| |||||||||  |||||||||||||||||
Sbjct: 6027177 ggccccgccggagcagaaggatcccctggtgg 6027208

 Score =  109 bits (55), Expect = 9e-24
 Identities = 55/55 (100%)
 Strand = Plus / Plus

                                                                      
Query: 130     tacagcctggcgcagaagagcgcgttccgcgtcatcgtccatccctccgccgcgc 184
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6026922 tacagcctggcgcagaagagcgcgttccgcgtcatcgtccatccctccgccgcgc 6026976

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 272   atcaacgtcaccccgctggtcgacgtgatgctggagctgctggtg 316
             |||||| ||||||||||||| |||||| || ||| | ||||||||
Sbjct: 40737 atcaacatcaccccgctggtggacgtgctgatggtggtgctggtg 40781

 Score = 36.2 bits (18), Expect = 0.11
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                        
Query: 291    tcgacgtgatgctggagctgctggtg 316
              |||||||||||||||  |||||||||
Sbjct: 356996 tcgacgtgatgctggtactgctggtg 357021

 Score = 36.2 bits (18), Expect = 0.11
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 273     tcaacgtcaccccgctgg 290
               ||||||||||||||||||
Sbjct: 3305930 tcaacgtcaccccgctgg 3305913

 Score = 34.2 bits (17), Expect = 0.44
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 239    tcgacccaggacagcga 255
              |||||||||||||||||
Sbjct: 472429 tcgacccaggacagcga 472445

 Score = 34.2 bits (17), Expect = 0.44
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 375     ccgaatcggtggcgccg 391
               |||||||||||||||||
Sbjct: 5233028 ccgaatcggtggcgccg 5233044

 Score = 32.2 bits (16), Expect = 1.7
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                  
Query: 408    ccctggtggaaagcatcaaa 427
              ||||||||||| ||||||||
Sbjct: 336110 ccctggtggaacgcatcaaa 336091

 Score = 32.2 bits (16), Expect = 1.7
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 381     cggtggcgccgccgga 396
               ||||||||||||||||
Sbjct: 1284836 cggtggcgccgccgga 1284851

 Score = 32.2 bits (16), Expect = 1.7
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 331     cgcgccgctgctgacc 346
               ||||||||||||||||
Sbjct: 2157282 cgcgccgctgctgacc 2157297

 Score = 32.2 bits (16), Expect = 1.7
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 236     ttctcgacccaggacagcga 255
               ||||| ||||||||||||||
Sbjct: 2352403 ttctccacccaggacagcga 2352422

 Score = 32.2 bits (16), Expect = 1.7
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 380     tcggtggcgccgccgg 395
               ||||||||||||||||
Sbjct: 2557865 tcggtggcgccgccgg 2557850

 Score = 32.2 bits (16), Expect = 1.7
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 329     accgcgccgctgctga 344
               ||||||||||||||||
Sbjct: 2618227 accgcgccgctgctga 2618212

 Score = 32.2 bits (16), Expect = 1.7
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 422     atcaaactcggccttc 437
               ||||||||||||||||
Sbjct: 3016615 atcaaactcggccttc 3016630

 Score = 32.2 bits (16), Expect = 1.7
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 376     cgaatcggtggcgccg 391
               ||||||||||||||||
Sbjct: 3060723 cgaatcggtggcgccg 3060708

 Score = 32.2 bits (16), Expect = 1.7
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 337     gctgctgaccaactcg 352
               ||||||||||||||||
Sbjct: 3536898 gctgctgaccaactcg 3536883

 Score = 32.2 bits (16), Expect = 1.7
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 307     gctgctggtggagttt 322
               ||||||||||||||||
Sbjct: 3994726 gctgctggtggagttt 3994741

 Score = 32.2 bits (16), Expect = 1.7
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 385     ggcgccgccggagacg 400
               ||||||||||||||||
Sbjct: 4063961 ggcgccgccggagacg 4063946

 Score = 32.2 bits (16), Expect = 1.7
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 328     caccgcgccgctgctg 343
               ||||||||||||||||
Sbjct: 4483035 caccgcgccgctgctg 4483020

 Score = 32.2 bits (16), Expect = 1.7
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 136     ctggcgcagaagagcg 151
               ||||||||||||||||
Sbjct: 5541506 ctggcgcagaagagcg 5541521

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 262    cctttccgaaatcaa 276
              |||||||||||||||
Sbjct: 193535 cctttccgaaatcaa 193521

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 335    ccgctgctgaccaac 349
              |||||||||||||||
Sbjct: 450819 ccgctgctgaccaac 450833

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 300    tgctggagctgctgg 314
              |||||||||||||||
Sbjct: 507177 tgctggagctgctgg 507191

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                     
Query: 279    tcaccccgctggtcgacgtgatg 301
              |||||||||||| ||||| ||||
Sbjct: 519518 tcaccccgctggacgacgagatg 519540

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 482    cgactggaaagacaa 496
              |||||||||||||||
Sbjct: 787033 cgactggaaagacaa 787019

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 330     ccgcgccgctgctga 344
               |||||||||||||||
Sbjct: 1160837 ccgcgccgctgctga 1160823

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 1095    ggcggaggcgcgcatctcg 1113
               |||| ||||||||||||||
Sbjct: 1194410 ggcgaaggcgcgcatctcg 1194392

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 326     ttcaccgcgccgctg 340
               |||||||||||||||
Sbjct: 1288021 ttcaccgcgccgctg 1288007

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 307     gctgctggtggagtt 321
               |||||||||||||||
Sbjct: 1447809 gctgctggtggagtt 1447823

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 305     gagctgctggtggag 319
               |||||||||||||||
Sbjct: 1670333 gagctgctggtggag 1670347

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 300     tgctggagctgctgg 314
               |||||||||||||||
Sbjct: 1930142 tgctggagctgctgg 1930156

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 241     gacccaggacagcga 255
               |||||||||||||||
Sbjct: 1933296 gacccaggacagcga 1933310

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 327     tcaccgcgccgctgctgac 345
               |||||||||||| ||||||
Sbjct: 2091874 tcaccgcgccgccgctgac 2091892

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 1252    gcgagcctggagtcg 1266
               |||||||||||||||
Sbjct: 2227652 gcgagcctggagtcg 2227638

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 329     accgcgccgctgctg 343
               |||||||||||||||
Sbjct: 2304951 accgcgccgctgctg 2304965

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 296     gtgatgctggagctg 310
               |||||||||||||||
Sbjct: 2622125 gtgatgctggagctg 2622111

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 300     tgctggagctgctgg 314
               |||||||||||||||
Sbjct: 2746646 tgctggagctgctgg 2746660

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 333     cgccgctgctgacca 347
               |||||||||||||||
Sbjct: 2772969 cgccgctgctgacca 2772983

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 1216    tttcgctcatgttca 1230
               |||||||||||||||
Sbjct: 2929765 tttcgctcatgttca 2929779

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 246     aggacagcgacgaag 260
               |||||||||||||||
Sbjct: 3243712 aggacagcgacgaag 3243698

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 380     tcggtggcgccgccggaga 398
               |||||| ||||||||||||
Sbjct: 3279187 tcggtgtcgccgccggaga 3279169

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 957     agcgcgcgatcactc 971
               |||||||||||||||
Sbjct: 3290316 agcgcgcgatcactc 3290330

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 134     gcctggcgcagaagagcgc 152
               |||||||||||||| ||||
Sbjct: 3296492 gcctggcgcagaagcgcgc 3296474

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 392     ccggagacgaaggat 406
               |||||||||||||||
Sbjct: 3314584 ccggagacgaaggat 3314598

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 230     atggccttctcgacc 244
               |||||||||||||||
Sbjct: 3487902 atggccttctcgacc 3487916

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 194     gggcctggccacgca 208
               |||||||||||||||
Sbjct: 3551648 gggcctggccacgca 3551662

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 332     gcgccgctgctgacc 346
               |||||||||||||||
Sbjct: 4025499 gcgccgctgctgacc 4025485

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 300     tgctggagctgctgg 314
               |||||||||||||||
Sbjct: 4050429 tgctggagctgctgg 4050443

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 380     tcggtggcgccgccg 394
               |||||||||||||||
Sbjct: 4118364 tcggtggcgccgccg 4118350

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 307     gctgctggtggagtt 321
               |||||||||||||||
Sbjct: 4297279 gctgctggtggagtt 4297265

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 894     actggttgataccgtcgct 912
               |||||||||||||| ||||
Sbjct: 4750873 actggttgataccgccgct 4750855

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 132     cagcctggcgcagaa 146
               |||||||||||||||
Sbjct: 4966363 cagcctggcgcagaa 4966349

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 212     tgaaggaggcgtcct 226
               |||||||||||||||
Sbjct: 5261603 tgaaggaggcgtcct 5261617

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 275     aacgtcaccccgctg 289
               |||||||||||||||
Sbjct: 5305015 aacgtcaccccgctg 5305001

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 244     ccaggacagcgacga 258
               |||||||||||||||
Sbjct: 5542214 ccaggacagcgacga 5542228

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 327     tcaccgcgccgctgctgac 345
               |||||||||||| ||||||
Sbjct: 5852731 tcaccgcgccgccgctgac 5852713

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 327     tcaccgcgccgctgc 341
               |||||||||||||||
Sbjct: 6181825 tcaccgcgccgctgc 6181839

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 300     tgctggagctgctgg 314
               |||||||||||||||
Sbjct: 6197789 tgctggagctgctgg 6197775

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 327     tcaccgcgccgctgc 341
               |||||||||||||||
Sbjct: 6228711 tcaccgcgccgctgc 6228697

 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 269     gaaatcaacgtcacc 283
               |||||||||||||||
Sbjct: 6264621 gaaatcaacgtcacc 6264607
  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5617
Number of Sequences: 1
Number of extensions: 5617
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of query: 1332
length of database: 6,534,396
effective HSP length: 17
effective length of query: 1315
effective length of database: 6,534,379
effective search space: 8592708385
effective search space used: 8592708385
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)