BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (1037 letters)

Distribution of 65 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           333   3e-91 

>GCTS_68 
          Length = 6534396

 Score =  333 bits (168), Expect = 3e-91
 Identities = 306/348 (87%), Gaps = 3/348 (0%)
 Strand = Plus / Plus

                                                                           
Query: 147     tacaagaccttcatgtacccgcagtcgatgtggtatgacctacgagaagtacatccgcta 206
               ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 5634021 tacaagaccttcatgtacccgcagtcgatgtgg-atgacctacgagaagtacatccgcaa 5634079

                                                                           
Query: 207     ggccgccggcctgggccgcgcgccgaccgaggtcgatccggacagctacgactggatgaa 266
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5634080 ggccgccggcctgggccgcgcgccgaccgaggtcgatccggacagctacgactggatgaa 5634139

                                                                           
Query: 267     ccaccactgcgacgtgctggtgttcggtgccggtccgtccggcttggtcgtcgccctcga 326
               |||||||||||||||||||||| |||| ||||| ||| ||||| ||| || |||||||| 
Sbjct: 5634140 ccaccactgcgacgtgctggtggtcggcgccggcccggccggcctggccgccgccctcgc 5634199

                                                                           
Query: 327     ctccgatcgaatcggcgcgcgggagcattttcgccgactagctggactagttcggcggca 386
               | ||| ||| | ||||||||||| | ||| |||||||| ||| |||  ||||||||||||
Sbjct: 5634200 cgccgctcgcagcggcgcgcgggtg-attctcgccgacgagcaggaagagttcggcggca 5634258

                                                                           
Query: 387     gtctgctggacacccgctagatcctcctactgcatgcccgccgcccagttagtctcggac 446
               | ||||||||||||||| ||| ||| | || ||| |||||||||| |||  ||| |||||
Sbjct: 5634259 gcctgctggacacccgcgagaccct-cgacggcaagcccgccgccgagtgggtcgcggac 5634317

                                                               
Query: 447     tctttgtccgaactgctaggcctgccgtcaagcatcctgctaccgcgc 494
                |  || |||| |||| ||||||||||  |  ||||||||||||||||
Sbjct: 5634318 gccgtggccgagctgcaaggcctgccggaagtcatcctgctaccgcgc 5634365




 Score = 38.2 bits (19), Expect = 0.022
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 273    ctgcgacgtgctggtgttc 291
              |||||||||||||||||||
Sbjct: 188251 ctgcgacgtgctggtgttc 188233




 Score = 36.2 bits (18), Expect = 0.086
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 211     gccggcctgggccgcgcgccga 232
               |||||||||||| |||||||||
Sbjct: 1801169 gccggcctgggcagcgcgccga 1801190




 Score = 34.2 bits (17), Expect = 0.34
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 208     gccgccggcctgggccg 224
               |||||||||||||||||
Sbjct: 2147486 gccgccggcctgggccg 2147502




 Score = 34.2 bits (17), Expect = 0.34
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 210     cgccggcctgggccgcg 226
               |||||||||||||||||
Sbjct: 2427063 cgccggcctgggccgcg 2427047




 Score = 34.2 bits (17), Expect = 0.34
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 275     gcgacgtgctggtgttc 291
               |||||||||||||||||
Sbjct: 3100819 gcgacgtgctggtgttc 3100803




 Score = 34.2 bits (17), Expect = 0.34
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                    
Query: 206     aggccgccggcctgggccgcg 226
               |||||||||||||| ||||||
Sbjct: 3390699 aggccgccggcctgcgccgcg 3390719




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 836    gcgacgcccgcgtcga 851
              ||||||||||||||||
Sbjct: 123879 gcgacgcccgcgtcga 123864




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 212    ccggcctgggccgcgc 227
              ||||||||||||||||
Sbjct: 452200 ccggcctgggccgcgc 452185




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 275     gcgacgtgctggtgtt 290
               ||||||||||||||||
Sbjct: 1257851 gcgacgtgctggtgtt 1257836




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 208     gccgccggcctgggcc 223
               ||||||||||||||||
Sbjct: 1295897 gccgccggcctgggcc 1295882




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 273     ctgcgacgtgctggtg 288
               ||||||||||||||||
Sbjct: 2648975 ctgcgacgtgctggtg 2648990




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 836     gcgacgcccgcgtcga 851
               ||||||||||||||||
Sbjct: 3225049 gcgacgcccgcgtcga 3225034




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 212     ccggcctgggccgcgcgccg 231
               ||||||||||| ||||||||
Sbjct: 3803662 ccggcctgggcagcgcgccg 3803643




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 214     ggcctgggccgcgcgc 229
               ||||||||||||||||
Sbjct: 4855125 ggcctgggccgcgcgc 4855140




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 211     gccggcctgggccgcg 226
               ||||||||||||||||
Sbjct: 5841168 gccggcctgggccgcg 5841183




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 237     ggtcgatccggacagc 252
               ||||||||||||||||
Sbjct: 5985896 ggtcgatccggacagc 5985911




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 290     tcggtgccggtccgtccggc 309
               |||| |||||||||||||||
Sbjct: 6071879 tcggcgccggtccgtccggc 6071860




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 367     gctggactagttcggcggca 386
               |||||||| |||||||||||
Sbjct: 6085499 gctggactggttcggcggca 6085480




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 211     gccggcctgggccgcg 226
               ||||||||||||||||
Sbjct: 6346411 gccggcctgggccgcg 6346426




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                            
Query: 389   ctgctggacacccgc 403
             |||||||||||||||
Sbjct: 30465 ctgctggacacccgc 30479




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 220    ggccgcgcgccgacc 234
              |||||||||||||||
Sbjct: 166932 ggccgcgcgccgacc 166918




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 212    ccggcctgggccgcg 226
              |||||||||||||||
Sbjct: 408605 ccggcctgggccgcg 408591




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 772    cgccccggtctcgtc 786
              |||||||||||||||
Sbjct: 416593 cgccccggtctcgtc 416607




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 213    cggcctgggccgcgc 227
              |||||||||||||||
Sbjct: 473868 cggcctgggccgcgc 473854




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 234    cgaggtcgatccgga 248
              |||||||||||||||
Sbjct: 499979 cgaggtcgatccgga 499965




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 311    tggtcgtcgccctcg 325
              |||||||||||||||
Sbjct: 500980 tggtcgtcgccctcg 500966




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                 
Query: 201    ccgctaggccgccggcctg 219
              |||||| ||||||||||||
Sbjct: 927112 ccgctacgccgccggcctg 927094




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 104    agcatcatctgctgg 118
              |||||||||||||||
Sbjct: 991730 agcatcatctgctgg 991744




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 314     tcgtcgccctcgact 328
               |||||||||||||||
Sbjct: 1075918 tcgtcgccctcgact 1075932




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 832     tcgcgcgacgcccgcgtcg 850
               ||||||||||||| |||||
Sbjct: 1079678 tcgcgcgacgcccacgtcg 1079660




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 379     cggcggcagtctgct 393
               |||||||||||||||
Sbjct: 1473247 cggcggcagtctgct 1473233




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 312     ggtcgtcgccctcga 326
               |||||||||||||||
Sbjct: 1480165 ggtcgtcgccctcga 1480179




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 215     gcctgggccgcgcgc 229
               |||||||||||||||
Sbjct: 1680174 gcctgggccgcgcgc 1680160




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 212     ccggcctgggccgcg 226
               |||||||||||||||
Sbjct: 1746108 ccggcctgggccgcg 1746094




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 305     ccggcttggtcgtcgccct 323
               ||||| |||||||||||||
Sbjct: 2224181 ccggcctggtcgtcgccct 2224199




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 416     ctgcatgcccgccgc 430
               |||||||||||||||
Sbjct: 2283155 ctgcatgcccgccgc 2283169




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 278     acgtgctggtgttcg 292
               |||||||||||||||
Sbjct: 2596652 acgtgctggtgttcg 2596666




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 224     gcgcgccgaccgagg 238
               |||||||||||||||
Sbjct: 2992701 gcgcgccgaccgagg 2992687




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 244     ccggacagctacgactgga 262
               |||||| ||||||||||||
Sbjct: 3244609 ccggaccgctacgactgga 3244591




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 208     gccgccggcctgggc 222
               |||||||||||||||
Sbjct: 3247955 gccgccggcctgggc 3247941




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 223     cgcgcgccgaccgag 237
               |||||||||||||||
Sbjct: 3385910 cgcgcgccgaccgag 3385924




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 206     aggccgccggcctgggccg 224
               |||||| ||||||||||||
Sbjct: 3387630 aggccgtcggcctgggccg 3387648




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 837     cgacgcccgcgtcga 851
               |||||||||||||||
Sbjct: 3437342 cgacgcccgcgtcga 3437356




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 244     ccggacagctacgactgga 262
               |||||| ||||||||||||
Sbjct: 3824850 ccggaccgctacgactgga 3824832




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 334     cgaatcggcgcgcgg 348
               |||||||||||||||
Sbjct: 3864937 cgaatcggcgcgcgg 3864923




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 313     gtcgtcgccctcgac 327
               |||||||||||||||
Sbjct: 3897019 gtcgtcgccctcgac 3897005




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 221     gccgcgcgccgaccg 235
               |||||||||||||||
Sbjct: 4125991 gccgcgcgccgaccg 4126005




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 212     ccggcctgggccgcg 226
               |||||||||||||||
Sbjct: 4250440 ccggcctgggccgcg 4250426




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 420     atgcccgccgcccag 434
               |||||||||||||||
Sbjct: 4506780 atgcccgccgcccag 4506766




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 206     aggccgccggcctgg 220
               |||||||||||||||
Sbjct: 4513928 aggccgccggcctgg 4513914




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 206     aggccgccggcctgg 220
               |||||||||||||||
Sbjct: 4629999 aggccgccggcctgg 4629985




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 526     ttcctcaccttcttc 540
               |||||||||||||||
Sbjct: 4746483 ttcctcaccttcttc 4746469




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 212     ccggcctgggccgcg 226
               |||||||||||||||
Sbjct: 4797427 ccggcctgggccgcg 4797441




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 206     aggccgccggcctgg 220
               |||||||||||||||
Sbjct: 4887504 aggccgccggcctgg 4887490




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 253     tacgactggatgaac 267
               |||||||||||||||
Sbjct: 5019890 tacgactggatgaac 5019876




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 421     tgcccgccgcccagt 435
               |||||||||||||||
Sbjct: 5249357 tgcccgccgcccagt 5249343




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 833     cgcgcgacgcccgcg 847
               |||||||||||||||
Sbjct: 5288616 cgcgcgacgcccgcg 5288602




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 219     gggccgcgcgccgac 233
               |||||||||||||||
Sbjct: 5740810 gggccgcgcgccgac 5740796




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 206     aggccgccggcctgg 220
               |||||||||||||||
Sbjct: 5812294 aggccgccggcctgg 5812280




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 206     aggccgccggcctgggccg 224
               |||||| ||||||||||||
Sbjct: 5838809 aggccggcggcctgggccg 5838827




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 210     cgccggcctgggccg 224
               |||||||||||||||
Sbjct: 5884019 cgccggcctgggccg 5884005




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 376     gttcggcggcagtctgctg 394
               |||||||||||| ||||||
Sbjct: 6319861 gttcggcggcagcctgctg 6319879




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 416     ctgcatgcccgccgc 430
               |||||||||||||||
Sbjct: 6363613 ctgcatgcccgccgc 6363627




 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 221     gccgcgcgccgaccg 235
               |||||||||||||||
Sbjct: 6381292 gccgcgcgccgaccg 6381306




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5518
Number of Sequences: 1
Number of extensions: 5518
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of query: 1037
length of database: 6,534,396
effective HSP length: 17
effective length of query: 1020
effective length of database: 6,534,379
effective search space: 6665066580
effective search space used: 6665066580
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)