BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (944 letters)

Distribution of 39 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           222   6e-58 

>GCTS_68 
          Length = 6534396

 Score =  222 bits (112), Expect = 6e-58
 Identities = 152/164 (92%), Gaps = 1/164 (0%)
 Strand = Plus / Minus

                                                                           
Query: 127     tactgcttgcccagacggcttgccgccgacgctcacctccgctgagatgctggccaccgc 186
               |||||||||||||| |||||||||||||||||||||| |||   ||||||    | ||||
Sbjct: 5737479 tactgcttgcccag-cggcttgccgccgacgctcaccaccgggcagatgcgcagcgccgc 5737421

                                                                           
Query: 187     ttcgcggttgcgcagtcccaggcaggcgtaggcggcgctccagtgggggggtttcaggcg 246
               |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 5737420 ttcgcggttgcgcagtcccaggcaggcgtaggcggcgctccagtggtggggtttcaggcg 5737361

                                                           
Query: 247     caggtaggaggcggcggtaggcgcggtcagcgcgtacagcgccg 290
               |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5737360 caggtaggaggcggcggtaggcgcggtcagcgcgcacagcgccg 5737317




 Score = 38.2 bits (19), Expect = 0.020
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 313     ggcccagtgctcgccgagt 331
               |||||||||||||||||||
Sbjct: 5737294 ggcccagtgctcgccgagt 5737276




 Score = 34.2 bits (17), Expect = 0.31
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 244     gcgcaggtaggaggcgg 260
               |||||||||||||||||
Sbjct: 1409341 gcgcaggtaggaggcgg 1409357




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 884    ccccgctgccgctctt 899
              ||||||||||||||||
Sbjct: 347507 ccccgctgccgctctt 347522




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 319     gtgctcgccgagtaca 334
               ||||||||||||||||
Sbjct: 1319985 gtgctcgccgagtaca 1319970




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 216     aggcggcgctccagtg 231
               ||||||||||||||||
Sbjct: 2400242 aggcggcgctccagtg 2400227




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 274     cagcgcgtacagcgcc 289
               ||||||||||||||||
Sbjct: 3817603 cagcgcgtacagcgcc 3817618




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 380     gcatgtaaaagttcaattgc 399
               ||||| ||||||||||||||
Sbjct: 4500643 gcatggaaaagttcaattgc 4500624




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 183     ccgcttcgcggttgcgcagt 202
               |||||||||||||| |||||
Sbjct: 5638968 ccgcttcgcggttgggcagt 5638949




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 906     cgtcgtcgaggttgtg 921
               ||||||||||||||||
Sbjct: 6346056 cgtcgtcgaggttgtg 6346071




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 260    gcggtaggcgcggtc 274
              |||||||||||||||
Sbjct: 173329 gcggtaggcgcggtc 173343




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 140    gacggcttgccgccg 154
              |||||||||||||||
Sbjct: 181886 gacggcttgccgccg 181900




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                 
Query: 205    caggcaggcgtaggcggcg 223
              ||||| |||||||||||||
Sbjct: 350131 caggcgggcgtaggcggcg 350149




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 319     gtgctcgccgagtac 333
               |||||||||||||||
Sbjct: 1298330 gtgctcgccgagtac 1298316




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 264     taggcgcggtcagcg 278
               |||||||||||||||
Sbjct: 1391133 taggcgcggtcagcg 1391119




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 210     aggcgtaggcggcgc 224
               |||||||||||||||
Sbjct: 1403573 aggcgtaggcggcgc 1403587




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 195     tgcgcagtcccaggc 209
               |||||||||||||||
Sbjct: 2387118 tgcgcagtcccaggc 2387104




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 140     gacggcttgccgccg 154
               |||||||||||||||
Sbjct: 2441698 gacggcttgccgccg 2441712




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 902     tcaccgtcgtcgaggttgt 920
               ||||| |||||||||||||
Sbjct: 2666289 tcaccttcgtcgaggttgt 2666307




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 204     ccaggcaggcgtagg 218
               |||||||||||||||
Sbjct: 2749715 ccaggcaggcgtagg 2749729




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 241     caggcgcaggtaggaggcg 259
               |||||||||||||| ||||
Sbjct: 2813409 caggcgcaggtaggcggcg 2813427




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 216     aggcggcgctccagt 230
               |||||||||||||||
Sbjct: 2974331 aggcggcgctccagt 2974317




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 175     gctggccaccgcttcgcgg 193
               |||||||||||| ||||||
Sbjct: 3197545 gctggccaccgcctcgcgg 3197563




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 240     tcaggcgcaggtagg 254
               |||||||||||||||
Sbjct: 3268398 tcaggcgcaggtagg 3268412




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 179     gccaccgcttcgcgg 193
               |||||||||||||||
Sbjct: 3279643 gccaccgcttcgcgg 3279629




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 211     ggcgtaggcggcgct 225
               |||||||||||||||
Sbjct: 3617892 ggcgtaggcggcgct 3617906




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 144     gcttgccgccgacgc 158
               |||||||||||||||
Sbjct: 3722229 gcttgccgccgacgc 3722215




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 191     cggttgcgcagtcccaggc 209
               |||| ||||||||||||||
Sbjct: 3777078 cggtggcgcagtcccaggc 3777060




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 239     ttcaggcgcaggtag 253
               |||||||||||||||
Sbjct: 4013095 ttcaggcgcaggtag 4013081




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 260     gcggtaggcgcggtc 274
               |||||||||||||||
Sbjct: 4201984 gcggtaggcgcggtc 4201998




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 85      ggcatcatctgctgg 99
               |||||||||||||||
Sbjct: 4347757 ggcatcatctgctgg 4347771




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 282     acagcgccgaggggt 296
               |||||||||||||||
Sbjct: 4547798 acagcgccgaggggt 4547784




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 279     cgtacagcgccgagg 293
               |||||||||||||||
Sbjct: 4825269 cgtacagcgccgagg 4825255




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 188     tcgcggttgcgcagt 202
               |||||||||||||||
Sbjct: 5387202 tcgcggttgcgcagt 5387216




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 319     gtgctcgccgagtac 333
               |||||||||||||||
Sbjct: 5544372 gtgctcgccgagtac 5544386




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 240     tcaggcgcaggtaggaggc 258
               |||||||||||| ||||||
Sbjct: 5569456 tcaggcgcaggtcggaggc 5569474




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 145     cttgccgccgacgct 159
               |||||||||||||||
Sbjct: 6363156 cttgccgccgacgct 6363170




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 258     cggcggtaggcgcgg 272
               |||||||||||||||
Sbjct: 6413468 cggcggtaggcgcgg 6413482




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 599     gacccgcaccagccc 613
               |||||||||||||||
Sbjct: 6529240 gacccgcaccagccc 6529226




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4535
Number of Sequences: 1
Number of extensions: 4535
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of query: 944
length of database: 6,534,396
effective HSP length: 16
effective length of query: 928
effective length of database: 6,534,380
effective search space: 6063904640
effective search space used: 6063904640
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)