BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (1020 letters)

Distribution of 36 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           561   e-160 

>GCTS_68 
          Length = 6534396

 Score =  561 bits (283), Expect = e-160
 Identities = 290/291 (99%), Gaps = 1/291 (0%)
 Strand = Plus / Plus

                                                                          
Query: 127    tagtcggtgtgcggcgaatattaccggatgtgccggngaaagaaagccgttcggtgtcaa 186
              |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 519098 tagtcggtgtgcggcgaatattaccggatgtgccgg-gaaagaaagccgttcggtgtcaa 519156

                                                                          
Query: 187    accaatgacgcaattgccggagatggaagctctttgcgtcttgtcctgtctggttttctg 246
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519157 accaatgacgcaattgccggagatggaagctctttgcgtcttgtcctgtctggttttctg 519216

                                                                          
Query: 247    gctgagcatgtaggacgttactgacctttatcagggggcggcatgatccgggaaatcctc 306
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519217 gctgagcatgtaggacgttactgacctttatcagggggcggcatgatccgggaaatcctc 519276

                                                                          
Query: 307    aagatgggtgacgagcgcctgttgcgcattgcgcagccggtgccgtccgaactgctcggc 366
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519277 aagatgggtgacgagcgcctgttgcgcattgcgcagccggtgccgtccgaactgctcggc 519336

                                                                 
Query: 367    agcgaggagctgcaacggctgatcgacgacatgttcgaaaccatgcatcac 417
              |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519337 agcgaggagctgcaacggctgatcgacgacatgttcgaaaccatgcatcac 519387




 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                           
Query: 384     gctgatcgacgacatgttcgaaaccatg 411
               ||||||||||||||||||||||||||||
Sbjct: 5822842 gctgatcgacgacatgttcgaaaccatg 5822815




 Score = 36.2 bits (18), Expect = 0.084
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 354     cgaactgctcggcagcga 371
               ||||||||||||||||||
Sbjct: 2623488 cgaactgctcggcagcga 2623505




 Score = 36.2 bits (18), Expect = 0.084
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 366     cagcgaggagctgcaacg 383
               ||||||||||||||||||
Sbjct: 5462145 cagcgaggagctgcaacg 5462128




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                 
Query: 354   cgaactgctcggcagcgagg 373
             ||||||||||||| ||||||
Sbjct: 10573 cgaactgctcggcggcgagg 10592




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 201    tgccggagatggaagc 216
              ||||||||||||||||
Sbjct: 969547 tgccggagatggaagc 969532




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 363     cggcagcgaggagctg 378
               ||||||||||||||||
Sbjct: 2407332 cggcagcgaggagctg 2407317




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 295     cgggaaatcctcaaga 310
               ||||||||||||||||
Sbjct: 2804998 cgggaaatcctcaaga 2804983




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 358     ctgctcggcagcgagg 373
               ||||||||||||||||
Sbjct: 3745451 ctgctcggcagcgagg 3745436




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 363     cggcagcgaggagctg 378
               ||||||||||||||||
Sbjct: 4125443 cggcagcgaggagctg 4125458




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 352     tccgaactgctcggcagcga 371
               ||||||||||||| ||||||
Sbjct: 4329276 tccgaactgctcgccagcga 4329295




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 317     acgagcgcctgttgcg 332
               ||||||||||||||||
Sbjct: 4425547 acgagcgcctgttgcg 4425532




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 281     ggggcggcatgatccg 296
               ||||||||||||||||
Sbjct: 5073668 ggggcggcatgatccg 5073653




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 358     ctgctcggcagcgagg 373
               ||||||||||||||||
Sbjct: 5108189 ctgctcggcagcgagg 5108174




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 358     ctgctcggcagcgagg 373
               ||||||||||||||||
Sbjct: 5128042 ctgctcggcagcgagg 5128027




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 316     gacgagcgcctgttgc 331
               ||||||||||||||||
Sbjct: 5552085 gacgagcgcctgttgc 5552100




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                            
Query: 359   tgctcggcagcgagg 373
             |||||||||||||||
Sbjct: 24367 tgctcggcagcgagg 24381




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                            
Query: 318   cgagcgcctgttgcg 332
             |||||||||||||||
Sbjct: 55144 cgagcgcctgttgcg 55130




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                 
Query: 366    cagcgaggagctgcaacgg 384
              |||| ||||||||||||||
Sbjct: 769843 cagcaaggagctgcaacgg 769825




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 321    gcgcctgttgcgcat 335
              |||||||||||||||
Sbjct: 857143 gcgcctgttgcgcat 857157




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 357     actgctcggcagcga 371
               |||||||||||||||
Sbjct: 1732844 actgctcggcagcga 1732858




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 385     ctgatcgacgacatg 399
               |||||||||||||||
Sbjct: 2486233 ctgatcgacgacatg 2486219




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 242     ttctggctgagcatg 256
               |||||||||||||||
Sbjct: 2525474 ttctggctgagcatg 2525488




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 368     gcgaggagctgcaacggct 386
               ||||||| |||||||||||
Sbjct: 3121845 gcgaggatctgcaacggct 3121863




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 354     cgaactgctcggcagcgag 372
               ||||||| |||||||||||
Sbjct: 3173431 cgaactgttcggcagcgag 3173413




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 347     tgccgtccgaactgctcgg 365
               ||||| |||||||||||||
Sbjct: 3790419 tgccggccgaactgctcgg 3790401




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 337     gcgcagccggtgccg 351
               |||||||||||||||
Sbjct: 3960093 gcgcagccggtgccg 3960079




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 21/23 (91%)
 Strand = Plus / Minus

                                      
Query: 358     ctgctcggcagcgaggagctgca 380
               ||||||||||||| || ||||||
Sbjct: 4296903 ctgctcggcagcgtggcgctgca 4296881




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 353     ccgaactgctcggca 367
               |||||||||||||||
Sbjct: 4739913 ccgaactgctcggca 4739927




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 353     ccgaactgctcggca 367
               |||||||||||||||
Sbjct: 4890533 ccgaactgctcggca 4890547




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 353     ccgaactgctcggcagcga 371
               |||||||||||||| ||||
Sbjct: 5097838 ccgaactgctcggcggcga 5097856




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 362     tcggcagcgaggagc 376
               |||||||||||||||
Sbjct: 5181091 tcggcagcgaggagc 5181105




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 353     ccgaactgctcggca 367
               |||||||||||||||
Sbjct: 5898072 ccgaactgctcggca 5898058




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 565     ccctttccctttacc 579
               |||||||||||||||
Sbjct: 5948354 ccctttccctttacc 5948368




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 360     gctcggcagcgagga 374
               |||||||||||||||
Sbjct: 6233962 gctcggcagcgagga 6233948




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 360     gctcggcagcgagga 374
               |||||||||||||||
Sbjct: 6330449 gctcggcagcgagga 6330435




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2758
Number of Sequences: 1
Number of extensions: 2758
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of query: 1020
length of database: 6,534,396
effective HSP length: 17
effective length of query: 1003
effective length of database: 6,534,379
effective search space: 6553982137
effective search space used: 6553982137
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)