BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (466 letters)

Distribution of 76 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           805   0.0   

>GCTS_68 
          Length = 6534396

 Score =  805 bits (406), Expect = 0.0
 Identities = 409/410 (99%)
 Strand = Plus / Plus

                                                                           
Query: 57      tatcatgcgaccccgcccggaatcgccgtgctgacccaggacagcgattgggaggtgctc 116
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933264 tatcatgcgaccccgcccggaatcgccgtgctgacccaggacagcgattgggaggtgctc 1933323

                                                                           
Query: 117     aacgaagccaccggcttctacgaggaaagcccgtatccctccgccttcaagggacaggtg 176
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933324 aacgaagccaccggcttctacgaggaaagcccgtatccctccgccttcaagggacaggtg 1933383

                                                                           
Query: 177     tatcgcgcgctgaactacataaacgctacgccgacgggcgcatcgctgctctggaacctc 236
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933384 tatcgcgcgctgaactacataaacgctacgccgacgggcgcatcgctgctctggaacctc 1933443

                                                                           
Query: 237     tacacgacgaacaatttcgtcgacatcaccccctcgtcgctgggcaacaatgtccagtcc 296
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933444 tacacgacgaacaatttcgtcgacatcaccccctcgtcgctgggcaacaatgtccagtcc 1933503

                                                                           
Query: 297     accaatcagcccatggcgctcaatcaggtcgccagagaaatcatcgtaggaaccggtccc 356
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933504 accaatcagcccatggcgctcaatcaggtcgccagagaaatcatcgtaggaaccggtccc 1933563

                                                                           
Query: 357     ggcccccagacccagatcgcgctcaatcagacaggcatcgccccgcaggcgcagacccag 416
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933564 ggcccccagacccagatcgcgctcaatcagacaggcatcgccccgcaggcgcagacccag 1933623

                                                                 
Query: 417     gggctgacctatgtcatcaacagttcgccgcattgggccctggacggcgt 466
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933624 tggctgacctatgtcatcaacagttcgccgcattgggccctggacggcgt 1933673




 Score = 34.2 bits (17), Expect = 0.15
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 392    catcgccccgcaggcgc 408
              |||||||||||||||||
Sbjct: 655199 catcgccccgcaggcgc 655215




 Score = 34.2 bits (17), Expect = 0.15
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 80      cgccgtgctgacccagg 96
               |||||||||||||||||
Sbjct: 4210134 cgccgtgctgacccagg 4210150




 Score = 32.2 bits (16), Expect = 0.59
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 364    agacccagatcgcgct 379
              ||||||||||||||||
Sbjct: 869481 agacccagatcgcgct 869496




 Score = 32.2 bits (16), Expect = 0.59
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 404     ggcgcagacccagggg 419
               ||||||||||||||||
Sbjct: 1457948 ggcgcagacccagggg 1457933




 Score = 32.2 bits (16), Expect = 0.59
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 65      gaccccgcccggaatc 80
               ||||||||||||||||
Sbjct: 4314506 gaccccgcccggaatc 4314491




 Score = 32.2 bits (16), Expect = 0.59
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 205     cgccgacgggcgcatc 220
               ||||||||||||||||
Sbjct: 4716728 cgccgacgggcgcatc 4716713




 Score = 32.2 bits (16), Expect = 0.59
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 73      ccggaatcgccgtgctgacc 92
               |||||||||||| |||||||
Sbjct: 5004760 ccggaatcgccgcgctgacc 5004741




 Score = 30.2 bits (15), Expect = 2.3
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                
Query: 261   atcaccccctcgtcgctgg 279
             |||||| ||||||||||||
Sbjct: 72345 atcacctcctcgtcgctgg 72327




 Score = 30.2 bits (15), Expect = 2.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 89     gacccaggacagcga 103
              |||||||||||||||
Sbjct: 472431 gacccaggacagcga 472445




 Score = 30.2 bits (15), Expect = 2.3
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 71      gcccggaatcgccgtgctg 89
               |||||| ||||||||||||
Sbjct: 1108869 gcccggcatcgccgtgctg 1108851




 Score = 30.2 bits (15), Expect = 2.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 110     ggtgctcaacgaagc 124
               |||||||||||||||
Sbjct: 1333009 ggtgctcaacgaagc 1332995




 Score = 30.2 bits (15), Expect = 2.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 208     cgacgggcgcatcgc 222
               |||||||||||||||
Sbjct: 1413936 cgacgggcgcatcgc 1413922




 Score = 30.2 bits (15), Expect = 2.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 399     ccgcaggcgcagacc 413
               |||||||||||||||
Sbjct: 1554805 ccgcaggcgcagacc 1554791




 Score = 30.2 bits (15), Expect = 2.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 207     ccgacgggcgcatcg 221
               |||||||||||||||
Sbjct: 2753805 ccgacgggcgcatcg 2753791




 Score = 30.2 bits (15), Expect = 2.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 75      ggaatcgccgtgctg 89
               |||||||||||||||
Sbjct: 2818443 ggaatcgccgtgctg 2818429




 Score = 30.2 bits (15), Expect = 2.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 59      tcatgcgaccccgcc 73
               |||||||||||||||
Sbjct: 2840891 tcatgcgaccccgcc 2840905




 Score = 30.2 bits (15), Expect = 2.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 394     tcgccccgcaggcgc 408
               |||||||||||||||
Sbjct: 3117644 tcgccccgcaggcgc 3117630




 Score = 30.2 bits (15), Expect = 2.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 206     gccgacgggcgcatc 220
               |||||||||||||||
Sbjct: 3934519 gccgacgggcgcatc 3934533




 Score = 30.2 bits (15), Expect = 2.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 399     ccgcaggcgcagacc 413
               |||||||||||||||
Sbjct: 4122885 ccgcaggcgcagacc 4122871




 Score = 30.2 bits (15), Expect = 2.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 391     gcatcgccccgcagg 405
               |||||||||||||||
Sbjct: 4475973 gcatcgccccgcagg 4475959




 Score = 30.2 bits (15), Expect = 2.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 394     tcgccccgcaggcgc 408
               |||||||||||||||
Sbjct: 4681658 tcgccccgcaggcgc 4681644




 Score = 30.2 bits (15), Expect = 2.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 85      tgctgacccaggaca 99
               |||||||||||||||
Sbjct: 4991073 tgctgacccaggaca 4991087




 Score = 30.2 bits (15), Expect = 2.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 212     gggcgcatcgctgct 226
               |||||||||||||||
Sbjct: 5413390 gggcgcatcgctgct 5413404




 Score = 30.2 bits (15), Expect = 2.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 157     ccgccttcaagggac 171
               |||||||||||||||
Sbjct: 5986211 ccgccttcaagggac 5986197




 Score = 30.2 bits (15), Expect = 2.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 89      gacccaggacagcga 103
               |||||||||||||||
Sbjct: 6027033 gacccaggacagcga 6027047




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 127    ccggcttctacgag 140
              ||||||||||||||
Sbjct: 248680 ccggcttctacgag 248693




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                
Query: 261    atcaccccctcgtcgctg 278
              |||||| |||||||||||
Sbjct: 285457 atcacctcctcgtcgctg 285440




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 247    acaatttcgtcgac 260
              ||||||||||||||
Sbjct: 330087 acaatttcgtcgac 330100




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 398    cccgcaggcgcaga 411
              ||||||||||||||
Sbjct: 557271 cccgcaggcgcaga 557258




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 79     tcgccgtgctgacc 92
              ||||||||||||||
Sbjct: 739016 tcgccgtgctgacc 739003




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 209    gacgggcgcatcgc 222
              ||||||||||||||
Sbjct: 898914 gacgggcgcatcgc 898927




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 80      cgccgtgctgaccc 93
               ||||||||||||||
Sbjct: 1002814 cgccgtgctgaccc 1002801




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 212     gggcgcatcgctgc 225
               ||||||||||||||
Sbjct: 1296087 gggcgcatcgctgc 1296100




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 391     gcatcgccccgcag 404
               ||||||||||||||
Sbjct: 1313046 gcatcgccccgcag 1313033




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 254     cgtcgacatcaccc 267
               ||||||||||||||
Sbjct: 1333411 cgtcgacatcaccc 1333398




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 256     tcgacatcaccccc 269
               ||||||||||||||
Sbjct: 1494405 tcgacatcaccccc 1494418




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 394     tcgccccgcaggcg 407
               ||||||||||||||
Sbjct: 1625729 tcgccccgcaggcg 1625742




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 123     gccaccggcttcta 136
               ||||||||||||||
Sbjct: 1805889 gccaccggcttcta 1805902




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 409     agacccaggggctg 422
               ||||||||||||||
Sbjct: 2038954 agacccaggggctg 2038941




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 361     cccagacccagatcgcgc 378
               ||||||||||| ||||||
Sbjct: 2052185 cccagacccagttcgcgc 2052202




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 200     cgctacgccgacgg 213
               ||||||||||||||
Sbjct: 2122754 cgctacgccgacgg 2122741




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 354     cccggcccccagac 367
               ||||||||||||||
Sbjct: 2317526 cccggcccccagac 2317513




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 118     acgaagccaccggc 131
               ||||||||||||||
Sbjct: 2341077 acgaagccaccggc 2341090




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 90      acccaggacagcga 103
               ||||||||||||||
Sbjct: 2352409 acccaggacagcga 2352422




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 273     tcgctgggcaacaa 286
               ||||||||||||||
Sbjct: 2361239 tcgctgggcaacaa 2361252




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 130     gcttctacgaggaa 143
               ||||||||||||||
Sbjct: 2398534 gcttctacgaggaa 2398521




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 157     ccgccttcaagggacagg 174
               |||||||||||| |||||
Sbjct: 2426347 ccgccttcaaggaacagg 2426364




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 352     gtcccggcccccag 365
               ||||||||||||||
Sbjct: 2453170 gtcccggcccccag 2453157




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 84      gtgctgacccagga 97
               ||||||||||||||
Sbjct: 2453829 gtgctgacccagga 2453842




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 111     gtgctcaacgaagccacc 128
               |||||| |||||||||||
Sbjct: 2572296 gtgctctacgaagccacc 2572313




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 127     ccggcttctacgag 140
               ||||||||||||||
Sbjct: 2779527 ccggcttctacgag 2779540




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 274     cgctgggcaacaat 287
               ||||||||||||||
Sbjct: 2844705 cgctgggcaacaat 2844692




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 118     acgaagccaccggc 131
               ||||||||||||||
Sbjct: 3200069 acgaagccaccggc 3200082




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 119     cgaagccaccggct 132
               ||||||||||||||
Sbjct: 3360105 cgaagccaccggct 3360118




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 173     ggtgtatcgcgcgc 186
               ||||||||||||||
Sbjct: 3386174 ggtgtatcgcgcgc 3386161




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 118     acgaagccaccggc 131
               ||||||||||||||
Sbjct: 3687480 acgaagccaccggc 3687467




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 405     gcgcagacccaggg 418
               ||||||||||||||
Sbjct: 3726786 gcgcagacccaggg 3726799




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 221     gctgctctggaacc 234
               ||||||||||||||
Sbjct: 3731368 gctgctctggaacc 3731381




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 205     cgccgacgggcgca 218
               ||||||||||||||
Sbjct: 3991001 cgccgacgggcgca 3991014




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 205     cgccgacgggcgcatcgc 222
               ||||||||||||| ||||
Sbjct: 4022509 cgccgacgggcgcttcgc 4022492




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 182     cgcgctgaactaca 195
               ||||||||||||||
Sbjct: 4035695 cgcgctgaactaca 4035708




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 83      cgtgctgacccagg 96
               ||||||||||||||
Sbjct: 4542446 cgtgctgacccagg 4542433




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 84      gtgctgacccagga 97
               ||||||||||||||
Sbjct: 4586052 gtgctgacccagga 4586039




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 164     caagggacaggtgt 177
               ||||||||||||||
Sbjct: 4675240 caagggacaggtgt 4675227




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 412     cccaggggctgacc 425
               ||||||||||||||
Sbjct: 5161218 cccaggggctgacc 5161205




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 112     tgctcaacgaagccaccg 129
               ||||| ||||||||||||
Sbjct: 5406511 tgctcgacgaagccaccg 5406494




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 83      cgtgctgacccagg 96
               ||||||||||||||
Sbjct: 5734536 cgtgctgacccagg 5734549




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 127     ccggcttctacgag 140
               ||||||||||||||
Sbjct: 5822645 ccggcttctacgag 5822632




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 430     tcatcaacagttcg 443
               ||||||||||||||
Sbjct: 5861960 tcatcaacagttcg 5861973




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 350     cggtcccggccccc 363
               ||||||||||||||
Sbjct: 5864524 cggtcccggccccc 5864511




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 391     gcatcgccccgcag 404
               ||||||||||||||
Sbjct: 5923500 gcatcgccccgcag 5923487




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 301     atcagcccatggcg 314
               ||||||||||||||
Sbjct: 5968804 atcagcccatggcg 5968791




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 386     gacaggcatcgccc 399
               ||||||||||||||
Sbjct: 6151074 gacaggcatcgccc 6151087




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 77      aatcgccgtgctga 90
               ||||||||||||||
Sbjct: 6173875 aatcgccgtgctga 6173888




 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 251     tttcgtcgacatca 264
               ||||||||||||||
Sbjct: 6265883 tttcgtcgacatca 6265896




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3227
Number of Sequences: 1
Number of extensions: 3227
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of query: 466
length of database: 6,534,396
effective HSP length: 16
effective length of query: 450
effective length of database: 6,534,380
effective search space: 2940471000
effective search space used: 2940471000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)