BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (238 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           258   3e-69 

>GCTS_68 
          Length = 6534396

 Score =  258 bits (130), Expect = 3e-69
 Identities = 169/182 (92%)
 Strand = Plus / Minus

                                                                           
Query: 57      taggcatcgaacaactggttggcggggacgtcgctcatcggttttccttttcccggcccg 116
               |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6051313 taggcatcgaacaactggttggcgggtacgtcgctcatcggttttccttttcccggcccg 6051254

                                                                           
Query: 117     tcagggctcgtcgttcaggtagctgaccttgcgcagatccggcaggctcacgcaaaccat 176
               |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 6051253 tcagggctcgtcgttcaggtagctgaccttgcgcagatccggcaggctcacgcagaccag 6051194

                                                                           
Query: 177     cagcttgagaaggggcaaggctgatacataccagcagaagacgttctccatccctcccga 236
               ||||   || |||  || |||||| ||||||||| |||||||||||||||||||| ||||
Sbjct: 6051193 cagcgccagcaggcacatggctgaaacataccagtagaagacgttctccatccctaccga 6051134

                 
Query: 237     ct 238
               ||
Sbjct: 6051133 ct 6051132




 Score = 40.1 bits (20), Expect = 0.001
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 61      catcgaacaactggttggcg 80
               ||||||||||||||||||||
Sbjct: 2871933 catcgaacaactggttggcg 2871914




 Score = 36.2 bits (18), Expect = 0.019
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 64      cgaacaactggttggcgg 81
               ||||||||||||||||||
Sbjct: 5082765 cgaacaactggttggcgg 5082782




 Score = 32.2 bits (16), Expect = 0.29
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 123    ctcgtcgttcaggtag 138
              ||||||||||||||||
Sbjct: 124175 ctcgtcgttcaggtag 124190




 Score = 32.2 bits (16), Expect = 0.29
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 121     ggctcgtcgttcaggt 136
               ||||||||||||||||
Sbjct: 4780805 ggctcgtcgttcaggt 4780790




 Score = 32.2 bits (16), Expect = 0.29
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 58      aggcatcgaacaactg 73
               ||||||||||||||||
Sbjct: 5079105 aggcatcgaacaactg 5079120




 Score = 30.2 bits (15), Expect = 1.2
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 147     gcgcagatccggcaggctc 165
               |||||| ||||||||||||
Sbjct: 1257638 gcgcaggtccggcaggctc 1257620




 Score = 30.2 bits (15), Expect = 1.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 124     tcgtcgttcaggtag 138
               |||||||||||||||
Sbjct: 4851208 tcgtcgttcaggtag 4851194




 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 68     caactggttggcgg 81
              ||||||||||||||
Sbjct: 681260 caactggttggcgg 681273




 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 172    accatcagcttgag 185
              ||||||||||||||
Sbjct: 774055 accatcagcttgag 774068




 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 128     cgttcaggtagctg 141
               ||||||||||||||
Sbjct: 1267973 cgttcaggtagctg 1267986




 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 87      tcgctcatcggttt 100
               ||||||||||||||
Sbjct: 1672481 tcgctcatcggttt 1672468




 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 138     gctgaccttgcgca 151
               ||||||||||||||
Sbjct: 1732707 gctgaccttgcgca 1732720




 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 68      caactggttggcgg 81
               ||||||||||||||
Sbjct: 1926821 caactggttggcgg 1926808




 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 149     gcagatccggcagg 162
               ||||||||||||||
Sbjct: 2074885 gcagatccggcagg 2074898




 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 157     ggcaggctcacgca 170
               ||||||||||||||
Sbjct: 3023289 ggcaggctcacgca 3023302




 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 135     gtagctgaccttgc 148
               ||||||||||||||
Sbjct: 3407040 gtagctgaccttgc 3407053




 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 154     tccggcaggctcac 167
               ||||||||||||||
Sbjct: 3799697 tccggcaggctcac 3799710




 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 68      caactggttggcgg 81
               ||||||||||||||
Sbjct: 4322370 caactggttggcgg 4322357




 Score = 28.2 bits (14), Expect = 4.6
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 135     gtagctgaccttgcgcag 152
               |||| |||||||||||||
Sbjct: 5064093 gtaggtgaccttgcgcag 5064110




 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 139     ctgaccttgcgcag 152
               ||||||||||||||
Sbjct: 5234381 ctgaccttgcgcag 5234368




 Score = 28.2 bits (14), Expect = 4.6
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 126     gtcgttcaggtagctgac 143
               |||| |||||||||||||
Sbjct: 5799832 gtcgatcaggtagctgac 5799849




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1029
Number of Sequences: 1
Number of extensions: 1029
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of query: 238
length of database: 6,534,396
effective HSP length: 15
effective length of query: 223
effective length of database: 6,534,381
effective search space: 1457166963
effective search space used: 1457166963
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)