BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (198 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           224   3e-59 

>GCTS_68 
          Length = 6534396

 Score =  224 bits (113), Expect = 3e-59
 Identities = 122/125 (97%)
 Strand = Plus / Minus

                                                                           
Query: 56      tatgatctgactaacaggtcacgaagaataggaacagttgcggagaattgcgttggatca 115
               |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 5672257 tatgatctgactaacaggtcaacaagaataggaacagttgcggagaattgcgttggatca 5672198

                                                                           
Query: 116     ccggggtgtgtttccgaactgtatgggttgtttcggtgcgtaactgtaccgctctgcacc 175
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5672197 ccggggtgtgtttccgaactgtatgggttgtttcggtgcgtaactgtaccgctctgcacc 5672138

                    
Query: 176     atcat 180
                ||||
Sbjct: 5672137 gtcat 5672133




 Score = 32.2 bits (16), Expect = 0.24
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 129     ccgaactgtatgggtt 144
               ||||||||||||||||
Sbjct: 4016660 ccgaactgtatgggtt 4016675




 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 111    gatcaccggggtgt 124
              ||||||||||||||
Sbjct: 429075 gatcaccggggtgt 429062




 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 174    ccatcatctgcagg 187
              ||||||||||||||
Sbjct: 988622 ccatcatctgcagg 988609




 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 85      aggaacagttgcgg 98
               ||||||||||||||
Sbjct: 1718451 aggaacagttgcgg 1718438




 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 109     tggatcaccggggt 122
               ||||||||||||||
Sbjct: 2150019 tggatcaccggggt 2150032




 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 163     accgctctgcacca 176
               ||||||||||||||
Sbjct: 2501176 accgctctgcacca 2501163




 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 111     gatcaccggggtgt 124
               ||||||||||||||
Sbjct: 3254570 gatcaccggggtgt 3254557




 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 111     gatcaccggggtgt 124
               ||||||||||||||
Sbjct: 4339822 gatcaccggggtgt 4339835




 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 86      ggaacagttgcgga 99
               ||||||||||||||
Sbjct: 5017228 ggaacagttgcgga 5017215




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 610
Number of Sequences: 1
Number of extensions: 610
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 198
length of database: 6,534,396
effective HSP length: 15
effective length of query: 183
effective length of database: 6,534,381
effective search space: 1195791723
effective search space used: 1195791723
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)