BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= (362 letters)

Distribution of 76 Blast Hits on the Query Sequence




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           547   e-156 
>GCTS_68 
          Length = 6534396

 Score =  547 bits (276), Expect = e-156
 Identities = 276/276 (100%)
 Strand = Plus / Minus

                                                                          
Query: 60     taggcgccgctgcgcgcagccgccaacccctcttccccgtctcggcaccaggtcacctcg 119
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318445 taggcgccgctgcgcgcagccgccaacccctcttccccgtctcggcaccaggtcacctcg 318386

                                                                          
Query: 120    aaaccgctgccattgaggtgctggaacagatgtgcgcccagtgtcggatcgtcctcgatg 179
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318385 aaaccgctgccattgaggtgctggaacagatgtgcgcccagtgtcggatcgtcctcgatg 318326

                                                                          
Query: 180    gccagcagtcgggggtcgggcgtcagggatgggaacatggcagccaaataagattgatta 239
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318325 gccagcagtcgggggtcgggcgtcagggatgggaacatggcagccaaataagattgatta 318266

                                                                          
Query: 240    gcaatcgtgccagtattcacgatctttccgcttcgtcgcaagccgaatccgccgggctgc 299
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318265 gcaatcgtgccagtattcacgatctttccgcttcgtcgcaagccgaatccgccgggctgc 318206

                                                  
Query: 300    gcacatcggtgcagattccccttccgcgacccgcta 335
              ||||||||||||||||||||||||||||||||||||
Sbjct: 318205 gcacatcggtgcagattccccttccgcgacccgcta 318170

 Score = 34.2 bits (17), Expect = 0.12
 Identities = 23/25 (92%)
 Strand = Plus / Minus

                                        
Query: 133     tgaggtgctggaacagatgtgcgcc 157
               |||||||||||||||| || |||||
Sbjct: 3133945 tgaggtgctggaacagctgggcgcc 3133921

 Score = 34.2 bits (17), Expect = 0.12
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                    
Query: 164     cggatcgtcctcgatggccag 184
               |||||| ||||||||||||||
Sbjct: 6156809 cggatcttcctcgatggccag 6156829

 Score = 32.2 bits (16), Expect = 0.45
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 107     ccaggtcacctcgaaa 122
               ||||||||||||||||
Sbjct: 1765927 ccaggtcacctcgaaa 1765912

 Score = 32.2 bits (16), Expect = 0.45
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 68      gctgcgcgcagccgcc 83
               ||||||||||||||||
Sbjct: 2516657 gctgcgcgcagccgcc 2516642

 Score = 32.2 bits (16), Expect = 0.45
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 68      gctgcgcgcagccgcc 83
               ||||||||||||||||
Sbjct: 2516646 gctgcgcgcagccgcc 2516661

 Score = 32.2 bits (16), Expect = 0.45
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 169     cgtcctcgatggccag 184
               ||||||||||||||||
Sbjct: 4119832 cgtcctcgatggccag 4119817

 Score = 32.2 bits (16), Expect = 0.45
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 172     cctcgatggccagcag 187
               ||||||||||||||||
Sbjct: 4296054 cctcgatggccagcag 4296069

 Score = 32.2 bits (16), Expect = 0.45
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 319     ccttccgcgacccgct 334
               ||||||||||||||||
Sbjct: 4678938 ccttccgcgacccgct 4678953

 Score = 32.2 bits (16), Expect = 0.45
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 135     aggtgctggaacagat 150
               ||||||||||||||||
Sbjct: 5108743 aggtgctggaacagat 5108728

 Score = 32.2 bits (16), Expect = 0.45
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 62      ggcgccgctgcgcgca 77
               ||||||||||||||||
Sbjct: 5695484 ggcgccgctgcgcgca 5695499

 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 178    tggccagcagtcggg 192
              |||||||||||||||
Sbjct: 376565 tggccagcagtcggg 376579

 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 68     gctgcgcgcagccgc 82
              |||||||||||||||
Sbjct: 638093 gctgcgcgcagccgc 638107

 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 74     cgcagccgccaaccc 88
              |||||||||||||||
Sbjct: 725276 cgcagccgccaaccc 725262

 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 289     cgccgggctgcgcac 303
               |||||||||||||||
Sbjct: 1007256 cgccgggctgcgcac 1007270

 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 134     gaggtgctggaacag 148
               |||||||||||||||
Sbjct: 1193974 gaggtgctggaacag 1193988

 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 174     tcgatggccagcagt 188
               |||||||||||||||
Sbjct: 1520665 tcgatggccagcagt 1520679

 Score = 30.2 bits (15), Expect = 1.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 63      gcgccgctgcgcgcagccg 81
               |||||||||||||| ||||
Sbjct: 1570910 gcgccgctgcgcgcggccg 1570928

 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 134     gaggtgctggaacag 148
               |||||||||||||||
Sbjct: 1611683 gaggtgctggaacag 1611697

 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 287     tccgccgggctgcgc 301
               |||||||||||||||
Sbjct: 2009405 tccgccgggctgcgc 2009419

 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 70      tgcgcgcagccgcca 84
               |||||||||||||||
Sbjct: 2053583 tgcgcgcagccgcca 2053597

 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 175     cgatggccagcagtc 189
               |||||||||||||||
Sbjct: 2144320 cgatggccagcagtc 2144306

 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 289     cgccgggctgcgcac 303
               |||||||||||||||
Sbjct: 3070820 cgccgggctgcgcac 3070806

 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 62      ggcgccgctgcgcgc 76
               |||||||||||||||
Sbjct: 3389036 ggcgccgctgcgcgc 3389022

 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 61      aggcgccgctgcgcg 75
               |||||||||||||||
Sbjct: 3549478 aggcgccgctgcgcg 3549464

 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 64      cgccgctgcgcgcag 78
               |||||||||||||||
Sbjct: 3836451 cgccgctgcgcgcag 3836437

 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 62      ggcgccgctgcgcgc 76
               |||||||||||||||
Sbjct: 3867182 ggcgccgctgcgcgc 3867196

 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 116     ctcgaaaccgctgcc 130
               |||||||||||||||
Sbjct: 5545848 ctcgaaaccgctgcc 5545834

 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 214     acatggcagccaaat 228
               |||||||||||||||
Sbjct: 6186551 acatggcagccaaat 6186537

 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 66      ccgctgcgcgcagcc 80
               |||||||||||||||
Sbjct: 6351818 ccgctgcgcgcagcc 6351832

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                           
Query: 288   ccgccgggctgcgc 301
             ||||||||||||||
Sbjct: 16406 ccgccgggctgcgc 16393

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                           
Query: 174   tcgatggccagcag 187
             ||||||||||||||
Sbjct: 54086 tcgatggccagcag 54099

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 62     ggcgccgctgcgcg 75
              ||||||||||||||
Sbjct: 492505 ggcgccgctgcgcg 492518

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 62     ggcgccgctgcgcg 75
              ||||||||||||||
Sbjct: 556956 ggcgccgctgcgcg 556943

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 171    tcctcgatggccag 184
              ||||||||||||||
Sbjct: 558205 tcctcgatggccag 558218

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                
Query: 66     ccgctgcgcgcagccgcc 83
              ||||||||||| ||||||
Sbjct: 685696 ccgctgcgcgccgccgcc 685679

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 61     aggcgccgctgcgc 74
              ||||||||||||||
Sbjct: 716454 aggcgccgctgcgc 716441

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 160    gtgtcggatcgtcc 173
              ||||||||||||||
Sbjct: 923962 gtgtcggatcgtcc 923975

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 70      tgcgcgcagccgcc 83
               ||||||||||||||
Sbjct: 1353940 tgcgcgcagccgcc 1353927

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 172     cctcgatggccagc 185
               ||||||||||||||
Sbjct: 1632630 cctcgatggccagc 1632617

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 61      aggcgccgctgcgc 74
               ||||||||||||||
Sbjct: 1661767 aggcgccgctgcgc 1661754

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 264     tttccgcttcgtcg 277
               ||||||||||||||
Sbjct: 1736258 tttccgcttcgtcg 1736245

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 174     tcgatggccagcag 187
               ||||||||||||||
Sbjct: 1845609 tcgatggccagcag 1845622

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 71      gcgcgcagccgcca 84
               ||||||||||||||
Sbjct: 2023179 gcgcgcagccgcca 2023192

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 288     ccgccgggctgcgc 301
               ||||||||||||||
Sbjct: 2379643 ccgccgggctgcgc 2379630

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 70      tgcgcgcagccgcc 83
               ||||||||||||||
Sbjct: 2602898 tgcgcgcagccgcc 2602911

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 63      gcgccgctgcgcgc 76
               ||||||||||||||
Sbjct: 2628683 gcgccgctgcgcgc 2628696

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 61      aggcgccgctgcgc 74
               ||||||||||||||
Sbjct: 2638649 aggcgccgctgcgc 2638662

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 20/22 (90%)
 Strand = Plus / Minus

                                     
Query: 168     tcgtcctcgatggccagcagtc 189
               |||||| || ||||||||||||
Sbjct: 2869815 tcgtccgcgctggccagcagtc 2869794

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 320     cttccgcgacccgc 333
               ||||||||||||||
Sbjct: 3101294 cttccgcgacccgc 3101307

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 65      gccgctgcgcgcagccgc 82
               ||||||||||| ||||||
Sbjct: 3117100 gccgctgcgcgaagccgc 3117117

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 104     gcaccaggtcacct 117
               ||||||||||||||
Sbjct: 3142560 gcaccaggtcacct 3142573

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 281     gccgaatccgccgg 294
               ||||||||||||||
Sbjct: 3152656 gccgaatccgccgg 3152643

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 288     ccgccgggctgcgc 301
               ||||||||||||||
Sbjct: 3395559 ccgccgggctgcgc 3395546

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 288     ccgccgggctgcgc 301
               ||||||||||||||
Sbjct: 3656842 ccgccgggctgcgc 3656855

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 63      gcgccgctgcgcgc 76
               ||||||||||||||
Sbjct: 3778813 gcgccgctgcgcgc 3778800

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 137     gtgctggaacagat 150
               ||||||||||||||
Sbjct: 3892395 gtgctggaacagat 3892408

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 62      ggcgccgctgcgcg 75
               ||||||||||||||
Sbjct: 3904268 ggcgccgctgcgcg 3904281

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 63      gcgccgctgcgcgc 76
               ||||||||||||||
Sbjct: 3916478 gcgccgctgcgcgc 3916491

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 169     cgtcctcgatggcc 182
               ||||||||||||||
Sbjct: 4042843 cgtcctcgatggcc 4042830

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 289     cgccgggctgcgca 302
               ||||||||||||||
Sbjct: 4100374 cgccgggctgcgca 4100387

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 68      gctgcgcgcagccg 81
               ||||||||||||||
Sbjct: 4666076 gctgcgcgcagccg 4666063

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 172     cctcgatggccagc 185
               ||||||||||||||
Sbjct: 4673004 cctcgatggccagc 4672991

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 171     tcctcgatggccagcagt 188
               |||||| |||||||||||
Sbjct: 4908494 tcctcgctggccagcagt 4908511

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 175     cgatggccagcagt 188
               ||||||||||||||
Sbjct: 4943733 cgatggccagcagt 4943746

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 61      aggcgccgctgcgc 74
               ||||||||||||||
Sbjct: 5003310 aggcgccgctgcgc 5003297

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 211     ggaacatggcagcc 224
               ||||||||||||||
Sbjct: 5126481 ggaacatggcagcc 5126494

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 172     cctcgatggccagc 185
               ||||||||||||||
Sbjct: 5397164 cctcgatggccagc 5397177

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 169     cgtcctcgatggccagca 186
               ||||||||||| ||||||
Sbjct: 5413936 cgtcctcgatgtccagca 5413919

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 65      gccgctgcgcgcag 78
               ||||||||||||||
Sbjct: 5476693 gccgctgcgcgcag 5476680

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 63      gcgccgctgcgcgc 76
               ||||||||||||||
Sbjct: 5626324 gcgccgctgcgcgc 5626311

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 171     tcctcgatggccag 184
               ||||||||||||||
Sbjct: 5811146 tcctcgatggccag 5811159

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 288     ccgccgggctgcgc 301
               ||||||||||||||
Sbjct: 5824422 ccgccgggctgcgc 5824409

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 107     ccaggtcacctcga 120
               ||||||||||||||
Sbjct: 6143290 ccaggtcacctcga 6143303

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 320     cttccgcgacccgc 333
               ||||||||||||||
Sbjct: 6292605 cttccgcgacccgc 6292618

 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 115     cctcgaaaccgctg 128
               ||||||||||||||
Sbjct: 6337596 cctcgaaaccgctg 6337583
  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2711
Number of Sequences: 1
Number of extensions: 2711
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of query: 362
length of database: 6,534,396
effective HSP length: 16
effective length of query: 346
effective length of database: 6,534,380
effective search space: 2260895480
effective search space used: 2260895480
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)