BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (996 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           383   e-106 

>GCTS_68 
          Length = 6534396

 Score =  383 bits (193), Expect = e-106
 Identities = 211/217 (97%)
 Strand = Plus / Plus

                                                                           
Query: 17      taatgcgctggcgactgccgccagatcgtcgaatatcagggtgccctctggcaagggctt 76
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5809149 taatgcgctggcgactgccgccagatcgtcgaatatcagggtgccctctggcaagggctt 5809208

                                                                           
Query: 77      gcccagcgtacgtacaccttttccggtctttaccaacaccggctgacaatcgacggcccg 136
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5809209 gcccagcgtacgtacaccttttccggtctttaccaacaccggctgacaatcgacggcccg 5809268

                                                                           
Query: 137     cgccgcctccaggtcaccgatgctgtcgccgacgaaccagatacccgacagatcgatcct 196
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 5809269 cgccgcctccaggtcaccgatgctgtcgccgacgaaccagatacccgacagatcgacccc 5809328

                                                    
Query: 197     gtggtggttggcgaactgccgcagcatacccggcttc 233
               || ||| ||| ||| ||||||||||||||||||||||
Sbjct: 5809329 gtagtgcttgccgatctgccgcagcatacccggcttc 5809365




 Score = 36.2 bits (18), Expect = 0.082
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 131     ggcccgcgccgcctccag 148
               ||||||||||||||||||
Sbjct: 3515984 ggcccgcgccgcctccag 3516001




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                            
Query: 136  gcgccgcctccaggtc 151
            ||||||||||||||||
Sbjct: 6920 gcgccgcctccaggtc 6905




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 133    cccgcgccgcctccag 148
              ||||||||||||||||
Sbjct: 205408 cccgcgccgcctccag 205393




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 130     cggcccgcgccgcctc 145
               ||||||||||||||||
Sbjct: 1009196 cggcccgcgccgcctc 1009211




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 130     cggcccgcgccgcctc 145
               ||||||||||||||||
Sbjct: 1103020 cggcccgcgccgcctc 1103005




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 128     gacggcccgcgccgcc 143
               ||||||||||||||||
Sbjct: 1254128 gacggcccgcgccgcc 1254113




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 135     cgcgccgcctccaggt 150
               ||||||||||||||||
Sbjct: 1719845 cgcgccgcctccaggt 1719830




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 130     cggcccgcgccgcctc 145
               ||||||||||||||||
Sbjct: 2279653 cggcccgcgccgcctc 2279668




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 130     cggcccgcgccgcctc 145
               ||||||||||||||||
Sbjct: 2524503 cggcccgcgccgcctc 2524518




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 154     cgatgctgtcgccgac 169
               ||||||||||||||||
Sbjct: 2595001 cgatgctgtcgccgac 2594986




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 152    accgatgctgtcgcc 166
              |||||||||||||||
Sbjct: 405557 accgatgctgtcgcc 405543




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 145    ccaggtcaccgatgc 159
              |||||||||||||||
Sbjct: 461648 ccaggtcaccgatgc 461662




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                 
Query: 118    gctgacaatcgacggcccg 136
              |||||| ||||||||||||
Sbjct: 918340 gctgaccatcgacggcccg 918358




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 137     cgccgcctccaggtc 151
               |||||||||||||||
Sbjct: 1449864 cgccgcctccaggtc 1449850




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 47      gaatatcagggtgcc 61
               |||||||||||||||
Sbjct: 1454872 gaatatcagggtgcc 1454886




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 133     cccgcgccgcctcca 147
               |||||||||||||||
Sbjct: 2658579 cccgcgccgcctcca 2658593




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 137     cgccgcctccaggtc 151
               |||||||||||||||
Sbjct: 2668348 cgccgcctccaggtc 2668362




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 154     cgatgctgtcgccga 168
               |||||||||||||||
Sbjct: 3963827 cgatgctgtcgccga 3963841




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 906     acacgtgggtcatctcttc 924
               |||||| ||||||||||||
Sbjct: 4056149 acacgtcggtcatctcttc 4056167




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 161     gtcgccgacgaaccagatacccg 183
               ||||||||||| || ||||||||
Sbjct: 4090404 gtcgccgacgatcccgatacccg 4090426




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 131     ggcccgcgccgcctc 145
               |||||||||||||||
Sbjct: 4122235 ggcccgcgccgcctc 4122249




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 618     tatatatatatgttg 632
               |||||||||||||||
Sbjct: 5260948 tatatatatatgttg 5260934




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 196     tgtggtggttggcga 210
               |||||||||||||||
Sbjct: 6216333 tgtggtggttggcga 6216319




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 207     gcgaactgccgcagc 221
               |||||||||||||||
Sbjct: 6273402 gcgaactgccgcagc 6273416




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2887
Number of Sequences: 1
Number of extensions: 2887
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of query: 996
length of database: 6,534,396
effective HSP length: 17
effective length of query: 979
effective length of database: 6,534,379
effective search space: 6397157041
effective search space used: 6397157041
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)