BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (70 letters)

Distribution of 27 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           107   2e-24 

>GCTS_68 
          Length = 6534396

 Score =  107 bits (54), Expect = 2e-24
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                     
Query: 17      taatgcgctggcgactgccgccagatcgtcgaatatcagggtgccctctggcaa 70
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5809149 taatgcgctggcgactgccgccagatcgtcgaatatcagggtgccctctggcaa 5809202




 Score = 30.2 bits (15), Expect = 0.29
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 47      gaatatcagggtgcc 61
               |||||||||||||||
Sbjct: 1454872 gaatatcagggtgcc 1454886




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 43     cgtcgaatatcagg 56
              ||||||||||||||
Sbjct: 257814 cgtcgaatatcagg 257801




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 34      ccgccagatcgtcgaata 51
               ||||| ||||||||||||
Sbjct: 2149187 ccgcctgatcgtcgaata 2149170




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 37      ccagatcgtcgaat 50
               ||||||||||||||
Sbjct: 2864719 ccagatcgtcgaat 2864706




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 33      gccgccagatcgtc 46
               ||||||||||||||
Sbjct: 3167634 gccgccagatcgtc 3167647




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 32      tgccgccagatcgtcgaa 49
               ||||| ||||||||||||
Sbjct: 3429917 tgccggcagatcgtcgaa 3429900




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 34      ccgccagatcgtcg 47
               ||||||||||||||
Sbjct: 4767459 ccgccagatcgtcg 4767446




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                          
Query: 27    gcgactgccgcca 39
             |||||||||||||
Sbjct: 79530 gcgactgccgcca 79542




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                           
Query: 52     tcagggtgccctc 64
              |||||||||||||
Sbjct: 455760 tcagggtgccctc 455748




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                           
Query: 36     gccagatcgtcga 48
              |||||||||||||
Sbjct: 476315 gccagatcgtcga 476327




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 19/21 (90%)
 Strand = Plus / Minus

                                   
Query: 28     cgactgccgccagatcgtcga 48
              ||||||||||| |||| ||||
Sbjct: 639318 cgactgccgcctgatcctcga 639298




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                           
Query: 21     gcgctggcgactg 33
              |||||||||||||
Sbjct: 657867 gcgctggcgactg 657879




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                           
Query: 27     gcgactgccgcca 39
              |||||||||||||
Sbjct: 862949 gcgactgccgcca 862937




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 37      ccagatcgtcgaa 49
               |||||||||||||
Sbjct: 1033032 ccagatcgtcgaa 1033044




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 46      cgaatatcagggt 58
               |||||||||||||
Sbjct: 1040592 cgaatatcagggt 1040604




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 37      ccagatcgtcgaa 49
               |||||||||||||
Sbjct: 1210185 ccagatcgtcgaa 1210173




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 28      cgactgccgccag 40
               |||||||||||||
Sbjct: 1345483 cgactgccgccag 1345495




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 16/17 (94%)
 Strand = Plus / Plus

                                
Query: 20      tgcgctggcgactgccg 36
               ||||| |||||||||||
Sbjct: 1382318 tgcgccggcgactgccg 1382334




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 24      ctggcgactgccg 36
               |||||||||||||
Sbjct: 1921764 ctggcgactgccg 1921776




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 27      gcgactgccgcca 39
               |||||||||||||
Sbjct: 2754092 gcgactgccgcca 2754104




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 51      atcagggtgccct 63
               |||||||||||||
Sbjct: 3559365 atcagggtgccct 3559377




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 24      ctggcgactgccg 36
               |||||||||||||
Sbjct: 3852922 ctggcgactgccg 3852934




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 17      taatgcgctggcg 29
               |||||||||||||
Sbjct: 4453794 taatgcgctggcg 4453806




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 24      ctggcgactgccg 36
               |||||||||||||
Sbjct: 4679736 ctggcgactgccg 4679748




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 35      cgccagatcgtcg 47
               |||||||||||||
Sbjct: 5608404 cgccagatcgtcg 5608392




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 36      gccagatcgtcga 48
               |||||||||||||
Sbjct: 6420772 gccagatcgtcga 6420760




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 469
Number of Sequences: 1
Number of extensions: 469
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of query: 70
length of database: 6,534,396
effective HSP length: 14
effective length of query: 56
effective length of database: 6,534,382
effective search space: 365925392
effective search space used: 365925392
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)