BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (866 letters)

Distribution of 34 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           236   4e-62 

>GCTS_68 
          Length = 6534396

 Score =  236 bits (119), Expect = 4e-62
 Identities = 222/255 (87%), Gaps = 1/255 (0%)
 Strand = Plus / Plus

                                                                           
Query: 121     ttcgccgaggtgatggagtttctcgtcgagtcgaaggtgaacggcatcgtgatcggcggc 180
               |||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4116409 ttcgccgaggtcctggagtttctcgtcgagtcgaaggtgcacggcatcgtgatcggcggc 4116468

                                                                           
Query: 181     tccaccggcgagtactacgcgcacaccgccgaggaacgtctggtgctcgcctgccaagcc 240
               |||||||||||||||||||||||||||||||||||||| ||||  ||||||  ||| |||
Sbjct: 4116469 tccaccggcgagtactacgcgcacaccgccgaggaacgcctggccctcgccgcccacgcc 4116528

                                                                           
Query: 241     aattaattcatctccgggcgcctgccgttggtggtgtgaaccggcgcgatccgtaccgag 300
               |   || ||||| |||||||||||||| |||||||| |||||||||||||||| ||||||
Sbjct: 4116529 agcgaagtcatcgccgggcgcctgccgctggtggtgggaaccggcgcgatccgcaccgag 4116588

                                                                           
Query: 301     gattcgatggcctatacctaaccctcactgtgccatcagcgtatacgccatcctggtcaa 360
               || ||| |||||||  || || || | | | |||||| |||   ||||||||||||||  
Sbjct: 4116589 gactcgctggcctacgccgaagccgc-ccgcgccatcggcgccgacgccatcctggtcgg 4116647

                              
Query: 361     ctcgccgccctacgc 375
               |||||||||||||||
Sbjct: 4116648 ctcgccgccctacgc 4116662




 Score = 36.2 bits (18), Expect = 0.072
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 282     cggcgcgatccgtaccga 299
               ||||||||||||||||||
Sbjct: 1336670 cggcgcgatccgtaccga 1336653




 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 363     cgccgccctacgcagta 379
               |||||||||||||||||
Sbjct: 1471024 cgccgccctacgcagta 1471008




 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 254     ccgggcgcctgccgttg 270
               |||||||||||||||||
Sbjct: 3943844 ccgggcgcctgccgttg 3943828




 Score = 34.2 bits (17), Expect = 0.28
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                    
Query: 172     atcggcggctccaccggcgag 192
               |||||||||||||||| ||||
Sbjct: 6171091 atcggcggctccaccgccgag 6171071




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 174     cggcggctccaccggc 189
               ||||||||||||||||
Sbjct: 3082129 cggcggctccaccggc 3082144




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 358     caactcgccgccctac 373
               ||||||||||||||||
Sbjct: 3504675 caactcgccgccctac 3504660




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 63      tatctatacccccgcc 78
               ||||||||||||||||
Sbjct: 4116351 tatctatacccccgcc 4116366




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 162     cggcatcgtgatcggc 177
               ||||||||||||||||
Sbjct: 4191132 cggcatcgtgatcggc 4191117




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 173     tcggcggctccaccgg 188
               ||||||||||||||||
Sbjct: 6290659 tcggcggctccaccgg 6290674




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 389    ggcgggaagatcgcc 403
              |||||||||||||||
Sbjct: 114096 ggcgggaagatcgcc 114082




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 147    cgagtcgaaggtgaa 161
              |||||||||||||||
Sbjct: 142377 cgagtcgaaggtgaa 142363




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 221    tggtgctcgcctgcc 235
              |||||||||||||||
Sbjct: 625909 tggtgctcgcctgcc 625895




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 166    atcgtgatcggcggc 180
              |||||||||||||||
Sbjct: 900339 atcgtgatcggcggc 900353




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 460    ccttgcgcggatgga 474
              |||||||||||||||
Sbjct: 925700 ccttgcgcggatgga 925714




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 122     tcgccgaggtgatgg 136
               |||||||||||||||
Sbjct: 1188915 tcgccgaggtgatgg 1188929




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 387     tcggcgggaagatcg 401
               |||||||||||||||
Sbjct: 1266057 tcggcgggaagatcg 1266071




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 155     aggtgaacggcatcg 169
               |||||||||||||||
Sbjct: 1842416 aggtgaacggcatcg 1842402




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 222     ggtgctcgcctgcca 236
               |||||||||||||||
Sbjct: 2158145 ggtgctcgcctgcca 2158159




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 427     cttcgtcggcttgca 441
               |||||||||||||||
Sbjct: 2212938 cttcgtcggcttgca 2212952




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 177     cggctccaccggcga 191
               |||||||||||||||
Sbjct: 2323328 cggctccaccggcga 2323342




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 121     ttcgccgaggtgatg 135
               |||||||||||||||
Sbjct: 2374301 ttcgccgaggtgatg 2374287




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 166     atcgtgatcggcggc 180
               |||||||||||||||
Sbjct: 2871651 atcgtgatcggcggc 2871665




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 383     catctcggcgggaagatcg 401
               ||||||||||| |||||||
Sbjct: 2887986 catctcggcggaaagatcg 2888004




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 155     aggtgaacggcatcg 169
               |||||||||||||||
Sbjct: 2956093 aggtgaacggcatcg 2956079




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 427     cttcgtcggcttgca 441
               |||||||||||||||
Sbjct: 3060570 cttcgtcggcttgca 3060556




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 206     ccgccgaggaacgtctggt 224
               ||||||||||||| |||||
Sbjct: 3064255 ccgccgaggaacgcctggt 3064273




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 347     gccatcctggtcaac 361
               |||||||||||||||
Sbjct: 3319607 gccatcctggtcaac 3319621




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 162     cggcatcgtgatcggcggc 180
               ||||| |||||||||||||
Sbjct: 4310379 cggcaacgtgatcggcggc 4310397




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 344     tacgccatcctggtc 358
               |||||||||||||||
Sbjct: 4502078 tacgccatcctggtc 4502092




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 257     ggcgcctgccgttgg 271
               |||||||||||||||
Sbjct: 4947847 ggcgcctgccgttgg 4947833




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 422     gaccgcttcgtcggc 436
               |||||||||||||||
Sbjct: 5132955 gaccgcttcgtcggc 5132941




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 153     gaaggtgaacggcat 167
               |||||||||||||||
Sbjct: 5694482 gaaggtgaacggcat 5694468




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 188     gcgagtactacgcgc 202
               |||||||||||||||
Sbjct: 5793139 gcgagtactacgcgc 5793125




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4206
Number of Sequences: 1
Number of extensions: 4206
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of query: 866
length of database: 6,534,396
effective HSP length: 16
effective length of query: 850
effective length of database: 6,534,380
effective search space: 5554223000
effective search space used: 5554223000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)