BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (884 letters)

Distribution of 40 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           579   e-165 



>GCTS_68 
          Length = 6534396

 Score =  579 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Minus

                                                                           
Query: 63      tacgaccgcacctactactggctgggctacgccttcgagcggcggatcaacgatgtctgg 122
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6345453 tacgaccgcacctactactggctgggctacgccttcgagcggcggatcaacgatgtctgg 6345394

                                                                           
Query: 123     cagttccgccagaacctgcgttacctgcgcaacgacctgtcgttccaggcggttacagcg 182
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6345393 cagttccgccagaacctgcgttacctgcgcaacgacctgtcgttccaggcggttacagcg 6345334

                                                                           
Query: 183     ggcacagctcatgccgacggcacactggaacgcagcaccacctcggtggatgaagacgtc 242
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6345333 ggcacagctcatgccgacggcacactggaacgcagcaccacctcggtggatgaagacgtc 6345274

                                                                           
Query: 243     agtcagttcgtagtagataacaacttccaggccgacttcgaaacaggcgccctgcgccac 302
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6345273 agtcagttcgtagtagataacaacttccaggccgacttcgaaacaggcgccctgcgccac 6345214

                                                                   
Query: 303     accctgctgctaggcctggatcacaaccgcaccgacaatcaatacacatcaa 354
               ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6345213 accctgctgctaggcctggatcacaaccgcaccgacaatcaatacacatcaa 6345162






 Score =  327 bits (165), Expect = 1e-89
 Identities = 197/208 (94%)
 Strand = Plus / Minus

                                                                           
Query: 377     caacgtcnacaacccgatctacggccagccgatcgtcaaaccggatcgttcgacggcctt 436
               ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6345139 caacgtcaacaacccgatctacggccagccgatcgtcaaaccggatcgttcgacggcctt 6345080

                                                                           
Query: 437     ctacgactactagcagaagacctaccagaccggcctctacgtccaggaccagatcgccct 496
               |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6345079 ctacgactacaagcagaagacctaccagaccggcctctacgtccaggaccagatcgccct 6345020

                                                                           
Query: 497     cgacaactggcgcctgaacctaggaagtcgcgaggactgggtgcatcacggggccccctt 556
               ||||||||||||||||| ||| ||  |||||||||||||||||||   ||||||| ||||
Sbjct: 6345019 cgacaactggcgcctgaccctcggcggtcgcgaggactgggtgcacaccggggccacctt 6344960

                                           
Query: 557     ctacaacaagggcgacgcccccaatacc 584
               ||||||||||||||||||| ||||||||
Sbjct: 6344959 ctacaacaagggcgacgccaccaatacc 6344932






 Score = 36.2 bits (18), Expect = 0.073
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 213     cgcagcaccacctcggtg 230
               ||||||||||||||||||
Sbjct: 1611000 cgcagcaccacctcggtg 1610983






 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 145     acctgcgcaacgacctg 161
               |||||||||||||||||
Sbjct: 1054829 acctgcgcaacgacctg 1054813






 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 397     acggccagccgatcgtc 413
               |||||||||||||||||
Sbjct: 1632139 acggccagccgatcgtc 1632123






 Score = 34.2 bits (17), Expect = 0.29
 Identities = 24/25 (96%), Gaps = 1/25 (4%)
 Strand = Plus / Plus

                                        
Query: 56      aacctgttacgaccgcacctactac 80
               |||||||| ||||||||||||||||
Sbjct: 5973522 aacctgtt-cgaccgcacctactac 5973545






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 486    cagatcgccctcgaca 501
              ||||||||||||||||
Sbjct: 213934 cagatcgccctcgaca 213919






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                  
Query: 302    caccctgctgctaggcctgg 321
              |||||||||||| |||||||
Sbjct: 852822 caccctgctgctgggcctgg 852803






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 160     tgtcgttccaggcggt 175
               ||||||||||||||||
Sbjct: 1444821 tgtcgttccaggcggt 1444836






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 159     ctgtcgttccaggcgg 174
               ||||||||||||||||
Sbjct: 1518200 ctgtcgttccaggcgg 1518215






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 113     cgatgtctggcagttccgcc 132
               ||||| ||||||||||||||
Sbjct: 1991856 cgatgcctggcagttccgcc 1991875






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 290     cgccctgcgccacacc 305
               ||||||||||||||||
Sbjct: 2126016 cgccctgcgccacacc 2126031






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 245     tcagttcgtagtagat 260
               ||||||||||||||||
Sbjct: 3734235 tcagttcgtagtagat 3734250






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 485    ccagatcgccctcga 499
              |||||||||||||||
Sbjct: 862897 ccagatcgccctcga 862883






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 211    aacgcagcaccacct 225
              |||||||||||||||
Sbjct: 959452 aacgcagcaccacct 959438






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 100    agcggcggatcaacg 114
              |||||||||||||||
Sbjct: 993568 agcggcggatcaacg 993554






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 92      cgccttcgagcggcg 106
               |||||||||||||||
Sbjct: 1071600 cgccttcgagcggcg 1071586






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 310     tgctaggcctggatcacaaccgc 332
               |||| |||||||||||| |||||
Sbjct: 1144711 tgctgggcctggatcaccaccgc 1144733






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 399     ggccagccgatcgtc 413
               |||||||||||||||
Sbjct: 1150817 ggccagccgatcgtc 1150831






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 213     cgcagcaccacctcg 227
               |||||||||||||||
Sbjct: 1310049 cgcagcaccacctcg 1310035






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 650     cccttccccacctcc 664
               |||||||||||||||
Sbjct: 1371471 cccttccccacctcc 1371457






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 397     acggccagccgatcg 411
               |||||||||||||||
Sbjct: 1489835 acggccagccgatcg 1489849






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 92      cgccttcgagcggcg 106
               |||||||||||||||
Sbjct: 1858797 cgccttcgagcggcg 1858811






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 633     atttcttacgccctt 647
               |||||||||||||||
Sbjct: 2016597 atttcttacgccctt 2016611






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 280     tcgaaacaggcgccctgcgccac 302
               ||||| |||||||||||| ||||
Sbjct: 2029243 tcgaaccaggcgccctgctccac 2029265






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 296     gcgccacaccctgct 310
               |||||||||||||||
Sbjct: 2110327 gcgccacaccctgct 2110313






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 357     gcatcatctgcaagc 371
               |||||||||||||||
Sbjct: 2628002 gcatcatctgcaagc 2628016






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 92      cgccttcgagcggcg 106
               |||||||||||||||
Sbjct: 3195422 cgccttcgagcggcg 3195408






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 424     gttcgacggccttct 438
               |||||||||||||||
Sbjct: 3504627 gttcgacggccttct 3504641






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 605     cggctctggccattc 619
               |||||||||||||||
Sbjct: 3645092 cggctctggccattc 3645106






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 400     gccagccgatcgtca 414
               |||||||||||||||
Sbjct: 3882250 gccagccgatcgtca 3882236






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 397     acggccagccgatcg 411
               |||||||||||||||
Sbjct: 3930086 acggccagccgatcg 3930100






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 737     cttcctctccgcccg 751
               |||||||||||||||
Sbjct: 4266527 cttcctctccgcccg 4266541






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 262     acaacttccaggccg 276
               |||||||||||||||
Sbjct: 4454836 acaacttccaggccg 4454822






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 146     cctgcgcaacgacct 160
               |||||||||||||||
Sbjct: 4526984 cctgcgcaacgacct 4526998






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 298     gccacaccctgctgc 312
               |||||||||||||||
Sbjct: 4663305 gccacaccctgctgc 4663319






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 482     ggaccagatcgccct 496
               |||||||||||||||
Sbjct: 4924345 ggaccagatcgccct 4924331






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 394     tctacggccagccga 408
               |||||||||||||||
Sbjct: 4962965 tctacggccagccga 4962951






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 295     tgcgccacaccctgc 309
               |||||||||||||||
Sbjct: 5119858 tgcgccacaccctgc 5119872






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 145     acctgcgcaacgacc 159
               |||||||||||||||
Sbjct: 5834644 acctgcgcaacgacc 5834630






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5144
Number of Sequences: 1
Number of extensions: 5144
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of query: 884
length of database: 6,534,396
effective HSP length: 16
effective length of query: 868
effective length of database: 6,534,380
effective search space: 5671841840
effective search space used: 5671841840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)