BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (811 letters)

Distribution of 64 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           527   e-150 

>GCTS_68 
          Length = 6534396

 Score =  527 bits (266), Expect = e-150
 Identities = 266/266 (100%)
 Strand = Plus / Minus

                                                                           
Query: 63      tacatgcgcaaccatatcgacctggacgatctcgagcgccgcgcgcgcttcccgcaaccc 122
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5834420 tacatgcgcaaccatatcgacctggacgatctcgagcgccgcgcgcgcttcccgcaaccc 5834361

                                                                           
Query: 123     tgagcacgagggcacttccatgaaccggcttcccacctgcctgctggccgccaccctgtt 182
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5834360 tgagcacgagggcacttccatgaaccggcttcccacctgcctgctggccgccaccctgtt 5834301

                                                                           
Query: 183     cctgggcagcgcctcgctatacgccgaagaccccgcctgtgcccgcgtcaggctggccga 242
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5834300 cctgggcagcgcctcgctatacgccgaagaccccgcctgtgcccgcgtcaggctggccga 5834241

                                                                           
Query: 243     tccaggctggagcgatatcgcggtgaccaacgccaccgccgcgtttctcctggaaagcct 302
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5834240 tccaggctggagcgatatcgcggtgaccaacgccaccgccgcgtttctcctggaaagcct 5834181

                                         
Query: 303     cggctaccaggtgaagatcgataccc 328
               ||||||||||||||||||||||||||
Sbjct: 5834180 cggctaccaggtgaagatcgataccc 5834155




 Score = 38.2 bits (19), Expect = 0.017
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 237     ggccgatccaggctggagc 255
               |||||||||||||||||||
Sbjct: 2649687 ggccgatccaggctggagc 2649705




 Score = 38.2 bits (19), Expect = 0.017
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 159     ctgcctgctggccgccacc 177
               |||||||||||||||||||
Sbjct: 4653207 ctgcctgctggccgccacc 4653225




 Score = 36.2 bits (18), Expect = 0.067
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 163     ctgctggccgccaccctg 180
               ||||||||||||||||||
Sbjct: 1110389 ctgctggccgccaccctg 1110406




 Score = 34.2 bits (17), Expect = 0.26
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                    
Query: 263     cggtgaccaacgccaccgccg 283
               ||||||||| |||||||||||
Sbjct: 4756704 cggtgaccagcgccaccgccg 4756724




 Score = 34.2 bits (17), Expect = 0.26
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 305     gctaccaggtgaagatc 321
               |||||||||||||||||
Sbjct: 5819342 gctaccaggtgaagatc 5819326




 Score = 32.2 bits (16), Expect = 1.0
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                 
Query: 161   gcctgctggccgccaccctg 180
             ||||||||||||||| ||||
Sbjct: 20595 gcctgctggccgccagcctg 20614




 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 81     gacctggacgatctcg 96
              ||||||||||||||||
Sbjct: 456610 gacctggacgatctcg 456625




 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 159     ctgcctgctggccgcc 174
               ||||||||||||||||
Sbjct: 1082036 ctgcctgctggccgcc 1082021




 Score = 32.2 bits (16), Expect = 1.0
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 80      cgacctggacgatctcgagc 99
               ||||||||||| ||||||||
Sbjct: 1224626 cgacctggacgctctcgagc 1224645




 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 159     ctgcctgctggccgcc 174
               ||||||||||||||||
Sbjct: 1298769 ctgcctgctggccgcc 1298754




 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 292     ctggaaagcctcggct 307
               ||||||||||||||||
Sbjct: 1430628 ctggaaagcctcggct 1430613




 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 277     accgccgcgtttctcc 292
               ||||||||||||||||
Sbjct: 1480021 accgccgcgtttctcc 1480036




 Score = 32.2 bits (16), Expect = 1.0
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 177     cctgttcctgggcagcgcct 196
               ||||||| ||||||||||||
Sbjct: 1606344 cctgttcatgggcagcgcct 1606325




 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 172     gccaccctgttcctgg 187
               ||||||||||||||||
Sbjct: 1797836 gccaccctgttcctgg 1797851




 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 104     cgcgcgcttcccgcaa 119
               ||||||||||||||||
Sbjct: 2053673 cgcgcgcttcccgcaa 2053658




 Score = 32.2 bits (16), Expect = 1.0
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 161     gcctgctggccgccaccctg 180
               ||||||||||||| ||||||
Sbjct: 2311525 gcctgctggccgcgaccctg 2311506




 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 291     cctggaaagcctcggc 306
               ||||||||||||||||
Sbjct: 2411077 cctggaaagcctcggc 2411092




 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 93      ctcgagcgccgcgcgc 108
               ||||||||||||||||
Sbjct: 2643071 ctcgagcgccgcgcgc 2643056




 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 156     cacctgcctgctggcc 171
               ||||||||||||||||
Sbjct: 3374483 cacctgcctgctggcc 3374498




 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 291     cctggaaagcctcggc 306
               ||||||||||||||||
Sbjct: 3802591 cctggaaagcctcggc 3802606




 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 270     caacgccaccgccgcg 285
               ||||||||||||||||
Sbjct: 4103276 caacgccaccgccgcg 4103291




 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 310     caggtgaagatcgata 325
               ||||||||||||||||
Sbjct: 4191939 caggtgaagatcgata 4191954




 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 159     ctgcctgctggccgcc 174
               ||||||||||||||||
Sbjct: 5020838 ctgcctgctggccgcc 5020823




 Score = 32.2 bits (16), Expect = 1.0
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 299     gcctcggctaccaggtgaag 318
               |||| |||||||||||||||
Sbjct: 5603241 gcctgggctaccaggtgaag 5603222




 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 293     tggaaagcctcggcta 308
               ||||||||||||||||
Sbjct: 6362487 tggaaagcctcggcta 6362472




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 203    acgccgaagaccccg 217
              |||||||||||||||
Sbjct: 137523 acgccgaagaccccg 137537




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 165    gctggccgccaccct 179
              |||||||||||||||
Sbjct: 145958 gctggccgccaccct 145944




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 186    gggcagcgcctcgct 200
              |||||||||||||||
Sbjct: 456013 gggcagcgcctcgct 456027




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 95     cgagcgccgcgcgcg 109
              |||||||||||||||
Sbjct: 563462 cgagcgccgcgcgcg 563448




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 161    gcctgctggccgcca 175
              |||||||||||||||
Sbjct: 707306 gcctgctggccgcca 707320




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 335    cccatcatctgcagg 349
              |||||||||||||||
Sbjct: 988623 cccatcatctgcagg 988609




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 169     gccgccaccctgttc 183
               |||||||||||||||
Sbjct: 1079525 gccgccaccctgttc 1079511




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 21/23 (91%)
 Strand = Plus / Minus

                                      
Query: 261     cgcggtgaccaacgccaccgccg 283
               ||||||||||  |||||||||||
Sbjct: 1375228 cgcggtgaccttcgccaccgccg 1375206




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 239     ccgatccaggctgga 253
               |||||||||||||||
Sbjct: 1418595 ccgatccaggctgga 1418581




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 300     cctcggctaccaggtgaag 318
               ||||||| |||||||||||
Sbjct: 1428620 cctcggccaccaggtgaag 1428638




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 233     ggctggccgatccag 247
               |||||||||||||||
Sbjct: 1562390 ggctggccgatccag 1562404




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 79      tcgacctggacgatctcga 97
               |||| ||||||||||||||
Sbjct: 1619210 tcgagctggacgatctcga 1619192




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 178     ctgttcctgggcagcgcct 196
               |||| ||||||||||||||
Sbjct: 1619784 ctgtacctgggcagcgcct 1619802




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 96      gagcgccgcgcgcgc 110
               |||||||||||||||
Sbjct: 1664610 gagcgccgcgcgcgc 1664624




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 293     tggaaagcctcggct 307
               |||||||||||||||
Sbjct: 1821306 tggaaagcctcggct 1821320




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 95      cgagcgccgcgcgcg 109
               |||||||||||||||
Sbjct: 1872833 cgagcgccgcgcgcg 1872847




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 158     cctgcctgctggccg 172
               |||||||||||||||
Sbjct: 1948732 cctgcctgctggccg 1948718




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 163     ctgctggccgccacc 177
               |||||||||||||||
Sbjct: 2000667 ctgctggccgccacc 2000681




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 96      gagcgccgcgcgcgc 110
               |||||||||||||||
Sbjct: 2122444 gagcgccgcgcgcgc 2122430




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 262     gcggtgaccaacgcc 276
               |||||||||||||||
Sbjct: 2296709 gcggtgaccaacgcc 2296695




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 236     tggccgatccaggct 250
               |||||||||||||||
Sbjct: 2469293 tggccgatccaggct 2469279




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 158     cctgcctgctggccgccaccctg 180
               |||| ||||| ||||||||||||
Sbjct: 2673941 cctggctgctcgccgccaccctg 2673963




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 104     cgcgcgcttcccgca 118
               |||||||||||||||
Sbjct: 2984864 cgcgcgcttcccgca 2984850




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 162     cctgctggccgccac 176
               |||||||||||||||
Sbjct: 2999173 cctgctggccgccac 2999187




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 92      tctcgagcgccgcgc 106
               |||||||||||||||
Sbjct: 3607955 tctcgagcgccgcgc 3607969




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 24/27 (88%)
 Strand = Plus / Plus

                                          
Query: 163     ctgctggccgccaccctgttcctgggc 189
               |||||||||||| |||||  |||||||
Sbjct: 3665199 ctgctggccgccgccctgggcctgggc 3665225




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 161     gcctgctggccgcca 175
               |||||||||||||||
Sbjct: 3832340 gcctgctggccgcca 3832354




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 291     cctggaaagcctcgg 305
               |||||||||||||||
Sbjct: 3944482 cctggaaagcctcgg 3944496




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 162     cctgctggccgccaccctg 180
               ||||||||||||| |||||
Sbjct: 3984355 cctgctggccgccgccctg 3984373




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 166     ctggccgccaccctg 180
               |||||||||||||||
Sbjct: 4452539 ctggccgccaccctg 4452553




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 298     agcctcggctaccag 312
               |||||||||||||||
Sbjct: 4817023 agcctcggctaccag 4817037




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 234     gctggccgatccagg 248
               |||||||||||||||
Sbjct: 4822403 gctggccgatccagg 4822389




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 166     ctggccgccaccctg 180
               |||||||||||||||
Sbjct: 4828895 ctggccgccaccctg 4828909




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 215     ccgcctgtgcccgcg 229
               |||||||||||||||
Sbjct: 5096165 ccgcctgtgcccgcg 5096179




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 80      cgacctggacgatct 94
               |||||||||||||||
Sbjct: 5224318 cgacctggacgatct 5224304




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 205     gccgaagaccccgcc 219
               |||||||||||||||
Sbjct: 5535556 gccgaagaccccgcc 5535542




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 163     ctgctggccgccacc 177
               |||||||||||||||
Sbjct: 5597542 ctgctggccgccacc 5597556




 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 273     cgccaccgccgcgtt 287
               |||||||||||||||
Sbjct: 6069121 cgccaccgccgcgtt 6069135




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4651
Number of Sequences: 1
Number of extensions: 4651
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of query: 811
length of database: 6,534,396
effective HSP length: 16
effective length of query: 795
effective length of database: 6,534,380
effective search space: 5194832100
effective search space used: 5194832100
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)