BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (988 letters)

Distribution of 63 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           216   4e-56 



>GCTS_68 
          Length = 6534396

 Score =  216 bits (109), Expect = 4e-56
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                          
Query: 64     tatctccggcagcgccgcgctggtgacgtgcacgttcatgccagccatgaagcagccgaa 123
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657137 tatctccggcagcgccgcgctggtgacgtgcacgttcatgccagccatgaagcagccgaa 657196

                                                               
Query: 124    caggccgccggtgacggcgacccaggcacgcagcgataccttgtcgtca 172
              |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657197 caggccgccggtgacggcgacccaggcacgcagcgataccttgtcgtca 657245






 Score =  170 bits (86), Expect = 2e-42
 Identities = 95/98 (96%)
 Strand = Plus / Plus

                                                                          
Query: 195    tccggttcgcgagtgtccacggtggcgatcaccgacatcctgggcagcagccggtcccgc 254
              ||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||
Sbjct: 657268 tccggttcgcgagtgtccacggtggcgatcaccgacatccccggcagcagccggccccgc 657327

                                                    
Query: 255    tcggcggcgtcggtgtccaggcggatacgcaccgggaa 292
              ||||||||||||||||||||||||||||||||||||||
Sbjct: 657328 tcggcggcgtcggtgtccaggcggatacgcaccgggaa 657365






 Score = 36.2 bits (18), Expect = 0.082
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 242     cagccggtcccgctcggcggcg 263
               ||||||||| ||||||||||||
Sbjct: 3676056 cagccggtcgcgctcggcggcg 3676077






 Score = 36.2 bits (18), Expect = 0.082
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 70      cggcagcgccgcgctggt 87
               ||||||||||||||||||
Sbjct: 4756178 cggcagcgccgcgctggt 4756195






 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 970    gtcggtgtggttggggg 986
              |||||||||||||||||
Sbjct: 603069 gtcggtgtggttggggg 603085






 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 117     agccgaacaggccgccg 133
               |||||||||||||||||
Sbjct: 1498196 agccgaacaggccgccg 1498180






 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 220     cgatcaccgacatcctg 236
               |||||||||||||||||
Sbjct: 1679526 cgatcaccgacatcctg 1679542






 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 218     ggcgatcaccgacatcc 234
               |||||||||||||||||
Sbjct: 2889346 ggcgatcaccgacatcc 2889330






 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 118     gccgaacaggccgccgg 134
               |||||||||||||||||
Sbjct: 3771223 gccgaacaggccgccgg 3771239






 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 121     gaacaggccgccggtga 137
               |||||||||||||||||
Sbjct: 6256399 gaacaggccgccggtga 6256383






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 73     cagcgccgcgctggtg 88
              ||||||||||||||||
Sbjct: 149909 cagcgccgcgctggtg 149924






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 70     cggcagcgccgcgctg 85
              ||||||||||||||||
Sbjct: 449436 cggcagcgccgcgctg 449451






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 122    aacaggccgccggtga 137
              ||||||||||||||||
Sbjct: 776732 aacaggccgccggtga 776717






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 252    cgctcggcggcgtcgg 267
              ||||||||||||||||
Sbjct: 941107 cgctcggcggcgtcgg 941122






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 928     gcgtagttgttgtgtt 943
               ||||||||||||||||
Sbjct: 1321190 gcgtagttgttgtgtt 1321205






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 118     gccgaacaggccgccg 133
               ||||||||||||||||
Sbjct: 1571668 gccgaacaggccgccg 1571653






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 245     ccggtcccgctcggcggcgt 264
               ||||||| ||||||||||||
Sbjct: 1734508 ccggtccagctcggcggcgt 1734489






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 68      tccggcagcgccgcgc 83
               ||||||||||||||||
Sbjct: 1921489 tccggcagcgccgcgc 1921504






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 215     ggtggcgatcaccgac 230
               ||||||||||||||||
Sbjct: 1925767 ggtggcgatcaccgac 1925782






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 118     gccgaacaggccgccg 133
               ||||||||||||||||
Sbjct: 2605897 gccgaacaggccgccg 2605882






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 71      ggcagcgccgcgctgg 86
               ||||||||||||||||
Sbjct: 3141724 ggcagcgccgcgctgg 3141739






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 68      tccggcagcgccgcgc 83
               ||||||||||||||||
Sbjct: 4360223 tccggcagcgccgcgc 4360238






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 124     caggccgccggtgacggcga 143
               ||||||||||| ||||||||
Sbjct: 5062808 caggccgccggcgacggcga 5062789






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 64      tatctccggcagcgcc 79
               ||||||||||||||||
Sbjct: 5911725 tatctccggcagcgcc 5911740






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 69     ccggcagcgccgcgc 83
              |||||||||||||||
Sbjct: 235761 ccggcagcgccgcgc 235775






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 441    tgtggtgtcggtatg 455
              |||||||||||||||
Sbjct: 559188 tgtggtgtcggtatg 559202






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                 
Query: 67     ctccggcagcgccgcgctg 85
              |||| ||||||||||||||
Sbjct: 619529 ctcctgcagcgccgcgctg 619511






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 214    cggtggcgatcaccg 228
              |||||||||||||||
Sbjct: 737918 cggtggcgatcaccg 737904






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 252    cgctcggcggcgtcg 266
              |||||||||||||||
Sbjct: 888778 cgctcggcggcgtcg 888764






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 75      gcgccgcgctggtga 89
               |||||||||||||||
Sbjct: 1014141 gcgccgcgctggtga 1014155






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 120     cgaacaggccgccgg 134
               |||||||||||||||
Sbjct: 1523439 cgaacaggccgccgg 1523425






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 68      tccggcagcgccgcg 82
               |||||||||||||||
Sbjct: 1552752 tccggcagcgccgcg 1552738






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 129     cgccggtgacggcga 143
               |||||||||||||||
Sbjct: 1620036 cgccggtgacggcga 1620022






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 249     tcccgctcggcggcg 263
               |||||||||||||||
Sbjct: 2056528 tcccgctcggcggcg 2056542






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 69      ccggcagcgccgcgc 83
               |||||||||||||||
Sbjct: 2159341 ccggcagcgccgcgc 2159355






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 75      gcgccgcgctggtga 89
               |||||||||||||||
Sbjct: 2207456 gcgccgcgctggtga 2207470






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 71      ggcagcgccgcgctg 85
               |||||||||||||||
Sbjct: 2680972 ggcagcgccgcgctg 2680958






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 72      gcagcgccgcgctgg 86
               |||||||||||||||
Sbjct: 2764142 gcagcgccgcgctgg 2764128






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 72      gcagcgccgcgctgg 86
               |||||||||||||||
Sbjct: 2811273 gcagcgccgcgctgg 2811287






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 69      ccggcagcgccgcgc 83
               |||||||||||||||
Sbjct: 3003085 ccggcagcgccgcgc 3003099






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 248     gtcccgctcggcggcgtcg 266
               ||||| |||||||||||||
Sbjct: 3003233 gtcccactcggcggcgtcg 3003251






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 210     tccacggtggcgatcaccg 228
               |||| ||||||||||||||
Sbjct: 3043984 tccagggtggcgatcaccg 3043966






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 216     gtggcgatcaccgac 230
               |||||||||||||||
Sbjct: 3463665 gtggcgatcaccgac 3463651






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 67      ctccggcagcgccgc 81
               |||||||||||||||
Sbjct: 3617650 ctccggcagcgccgc 3617664






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 241     gcagccggtcccgctcggcggcg 263
               |||||||| || |||||||||||
Sbjct: 3669601 gcagccggcccggctcggcggcg 3669623






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 249     tcccgctcggcggcg 263
               |||||||||||||||
Sbjct: 3726307 tcccgctcggcggcg 3726321






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 255     tcggcggcgtcggtg 269
               |||||||||||||||
Sbjct: 3845882 tcggcggcgtcggtg 3845896






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 70      cggcagcgccgcgctggtg 88
               |||||||||||||| ||||
Sbjct: 3865856 cggcagcgccgcgcgggtg 3865874






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 76      cgccgcgctggtgac 90
               |||||||||||||||
Sbjct: 4116176 cgccgcgctggtgac 4116190






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 124     caggccgccggtgac 138
               |||||||||||||||
Sbjct: 4125179 caggccgccggtgac 4125165






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 118     gccgaacaggccgcc 132
               |||||||||||||||
Sbjct: 4445366 gccgaacaggccgcc 4445352






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 214     cggtggcgatcaccg 228
               |||||||||||||||
Sbjct: 4891407 cggtggcgatcaccg 4891421






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 257     ggcggcgtcggtgtc 271
               |||||||||||||||
Sbjct: 4984206 ggcggcgtcggtgtc 4984192






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 253     gctcggcggcgtcgg 267
               |||||||||||||||
Sbjct: 4993611 gctcggcggcgtcgg 4993625






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 249     tcccgctcggcggcg 263
               |||||||||||||||
Sbjct: 5165266 tcccgctcggcggcg 5165280






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 120     cgaacaggccgccgg 134
               |||||||||||||||
Sbjct: 5328978 cgaacaggccgccgg 5328964






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 840     cttgtcgtcgtcttt 854
               |||||||||||||||
Sbjct: 5384240 cttgtcgtcgtcttt 5384254






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 67      ctccggcagcgccgc 81
               |||||||||||||||
Sbjct: 5504473 ctccggcagcgccgc 5504487






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 220     cgatcaccgacatcc 234
               |||||||||||||||
Sbjct: 5616368 cgatcaccgacatcc 5616382






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 72      gcagcgccgcgctgg 86
               |||||||||||||||
Sbjct: 5690872 gcagcgccgcgctgg 5690858






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 124     caggccgccggtgacggcg 142
               ||||||||||||| |||||
Sbjct: 5913779 caggccgccggtggcggcg 5913797






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 68      tccggcagcgccgcgctgg 86
               ||||||||||||| |||||
Sbjct: 6221111 tccggcagcgccgagctgg 6221129






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 251     ccgctcggcggcgtc 265
               |||||||||||||||
Sbjct: 6226288 ccgctcggcggcgtc 6226302






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5356
Number of Sequences: 1
Number of extensions: 5356
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of query: 988
length of database: 6,534,396
effective HSP length: 17
effective length of query: 971
effective length of database: 6,534,379
effective search space: 6344882009
effective search space used: 6344882009
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)