BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (1154 letters)

Distribution of 53 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           442   e-124 

>GCTS_68 
          Length = 6534396

 Score =  442 bits (223), Expect = e-124
 Identities = 264/274 (96%), Gaps = 4/274 (1%)
 Strand = Plus / Plus

                                                                           
Query: 64      tacgtgcgccaggaccacgataccagccgctaccatcatctgcag--gcctggccagcgc 121
               |||||||||||||||||||| |||||||||||||  | || |||   |||||||| ||||
Sbjct: 6057907 tacgtgcgccaggaccacgacaccagccgctaccgcc-tcagcacccgcctggcc-gcgc 6057964

                                                                           
Query: 122     tgggcttccgcttcctcgcgtccagcggggtggtcgacctggtccagccggtgctcgacg 181
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6057965 tgggcttccgcttcctcgcgtccagcggggtggtcgacctggtccagccggtgctcgacg 6058024

                                                                           
Query: 182     ggctcgcccgggagaccggcgaactggtgcgcctgggggtgatcgaaggcgatcgccaga 241
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6058025 ggctcgcccgggagaccggcgaactggtgcgcctgggggtgatcgaaggcgatcgccaga 6058084

                                                                           
Query: 242     cctggatcgccaagtcccagggcgccacctccgggctacgctacgaccccgacatggggc 301
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6058085 cctggatcgccaagtcccagggcgccacctccgggctacgctacgaccccgacatggggc 6058144

                                                 
Query: 302     gcgaggcgccgctgttctataccgcgtccgggca 335
               ||||||||||||||||||| ||||||||||||||
Sbjct: 6058145 gcgaggcgccgctgttctacaccgcgtccgggca 6058178




 Score = 34.2 bits (17), Expect = 0.38
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 113    ggccagcgctgggcttc 129
              |||||||||||||||||
Sbjct: 815606 ggccagcgctgggcttc 815622




 Score = 34.2 bits (17), Expect = 0.38
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                    
Query: 196     accggcgaactggtgcgcctg 216
               |||||||| ||||||||||||
Sbjct: 2034110 accggcgacctggtgcgcctg 2034090




 Score = 34.2 bits (17), Expect = 0.38
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 153     ggtcgacctggtccagc 169
               |||||||||||||||||
Sbjct: 3837032 ggtcgacctggtccagc 3837016




 Score = 34.2 bits (17), Expect = 0.38
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 192     ggagaccggcgaactgg 208
               |||||||||||||||||
Sbjct: 3852355 ggagaccggcgaactgg 3852339




 Score = 32.2 bits (16), Expect = 1.5
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                  
Query: 152    tggtcgacctggtccagccg 171
              ||||||||||||||| ||||
Sbjct: 301748 tggtcgacctggtcccgccg 301729




 Score = 32.2 bits (16), Expect = 1.5
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                  
Query: 197    ccggcgaactggtgcgcctg 216
              |||||||||||| |||||||
Sbjct: 524178 ccggcgaactggagcgcctg 524159




 Score = 32.2 bits (16), Expect = 1.5
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                  
Query: 214    ctgggggtgatcgaaggcga 233
              |||| |||||||||||||||
Sbjct: 541049 ctggcggtgatcgaaggcga 541068




 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 154     gtcgacctggtccagc 169
               ||||||||||||||||
Sbjct: 1055803 gtcgacctggtccagc 1055818




 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 170     cggtgctcgacgggct 185
               ||||||||||||||||
Sbjct: 1156750 cggtgctcgacgggct 1156765




 Score = 32.2 bits (16), Expect = 1.5
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                       
Query: 194     agaccggcgaactggtgcgcctgg 217
               |||||||||||||| |||| ||||
Sbjct: 1677155 agaccggcgaactgttgcgtctgg 1677178




 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 111     ctggccagcgctgggc 126
               ||||||||||||||||
Sbjct: 3937774 ctggccagcgctgggc 3937759




 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 232     gatcgccagacctgga 247
               ||||||||||||||||
Sbjct: 4152404 gatcgccagacctgga 4152389




 Score = 32.2 bits (16), Expect = 1.5
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 236     gccagacctggatcgccaag 255
               ||||||||||| ||||||||
Sbjct: 4783014 gccagacctggttcgccaag 4782995




 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 78      ccacgataccagccgc 93
               ||||||||||||||||
Sbjct: 5151422 ccacgataccagccgc 5151437




 Score = 32.2 bits (16), Expect = 1.5
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 155     tcgacctggtccagccggtg 174
               |||||||||||||| |||||
Sbjct: 5531700 tcgacctggtccaggcggtg 5531681




 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 302     gcgaggcgccgctgtt 317
               ||||||||||||||||
Sbjct: 6033882 gcgaggcgccgctgtt 6033897




 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 133     ttcctcgcgtccagcg 148
               ||||||||||||||||
Sbjct: 6329943 ttcctcgcgtccagcg 6329928




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                           
Query: 118  gcgctgggcttccgc 132
            |||||||||||||||
Sbjct: 6333 gcgctgggcttccgc 6319




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 226    gaaggcgatcgccag 240
              |||||||||||||||
Sbjct: 115498 gaaggcgatcgccag 115512




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 198    cggcgaactggtgcg 212
              |||||||||||||||
Sbjct: 784883 cggcgaactggtgcg 784897




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 176    tcgacgggctcgccc 190
              |||||||||||||||
Sbjct: 972305 tcgacgggctcgccc 972319




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 301     cgcgaggcgccgctg 315
               |||||||||||||||
Sbjct: 1051973 cgcgaggcgccgctg 1051987




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 168     gccggtgctcgacgg 182
               |||||||||||||||
Sbjct: 1064260 gccggtgctcgacgg 1064246




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 108     ggcctggccagcgct 122
               |||||||||||||||
Sbjct: 1082593 ggcctggccagcgct 1082579




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 296     tggggcgcgaggcgc 310
               |||||||||||||||
Sbjct: 1518829 tggggcgcgaggcgc 1518843




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 753     gcaactggcacttca 767
               |||||||||||||||
Sbjct: 1664811 gcaactggcacttca 1664797




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 112     tggccagcgctgggc 126
               |||||||||||||||
Sbjct: 1914876 tggccagcgctgggc 1914862




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 926     tatattttgttttctattc 944
               ||||||||||||| |||||
Sbjct: 2309561 tatattttgttttttattc 2309543




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 217     ggggtgatcgaaggc 231
               |||||||||||||||
Sbjct: 2377281 ggggtgatcgaaggc 2377295




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 109     gcctggccagcgctg 123
               |||||||||||||||
Sbjct: 2733866 gcctggccagcgctg 2733852




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 219     ggtgatcgaaggcga 233
               |||||||||||||||
Sbjct: 2816773 ggtgatcgaaggcga 2816759




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 155     tcgacctggtccagc 169
               |||||||||||||||
Sbjct: 2838335 tcgacctggtccagc 2838349




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 302     gcgaggcgccgctgttcta 320
               ||||||||||| |||||||
Sbjct: 2935103 gcgaggcgccggtgttcta 2935085




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 205     ctggtgcgcctgggg 219
               |||||||||||||||
Sbjct: 3194882 ctggtgcgcctgggg 3194896




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 212     gcctgggggtgatcg 226
               |||||||||||||||
Sbjct: 3296138 gcctgggggtgatcg 3296124




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 551     atcgtcctcgaccgt 565
               |||||||||||||||
Sbjct: 3366857 atcgtcctcgaccgt 3366871




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 188     cccgggagaccggcg 202
               |||||||||||||||
Sbjct: 3429659 cccgggagaccggcg 3429673




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 127     ttccgcttcctcgcg 141
               |||||||||||||||
Sbjct: 3576475 ttccgcttcctcgcg 3576489




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 69      gcgccaggaccacga 83
               |||||||||||||||
Sbjct: 4051847 gcgccaggaccacga 4051861




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 203     aactggtgcgcctgg 217
               |||||||||||||||
Sbjct: 4137821 aactggtgcgcctgg 4137835




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 165     ccagccggtgctcga 179
               |||||||||||||||
Sbjct: 4439189 ccagccggtgctcga 4439175




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 342     gcaggcctggccaga 356
               |||||||||||||||
Sbjct: 4545339 gcaggcctggccaga 4545325




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 120     gctgggcttccgcttcctc 138
               ||||||| |||||||||||
Sbjct: 4651356 gctgggcatccgcttcctc 4651338




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 118     gcgctgggcttccgc 132
               |||||||||||||||
Sbjct: 4761074 gcgctgggcttccgc 4761088




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 192     ggagaccggcgaactggtg 210
               |||||||||||||| ||||
Sbjct: 4888489 ggagaccggcgaacgggtg 4888471




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 146     gcggggtggtcgacctggt 164
               ||||||||||| |||||||
Sbjct: 4896806 gcggggtggtctacctggt 4896824




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 168     gccggtgctcgacgg 182
               |||||||||||||||
Sbjct: 4989077 gccggtgctcgacgg 4989091




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 150     ggtggtcgacctggt 164
               |||||||||||||||
Sbjct: 5044097 ggtggtcgacctggt 5044083




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 136     ctcgcgtccagcggg 150
               |||||||||||||||
Sbjct: 5882382 ctcgcgtccagcggg 5882368




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 262     ggcgccacctccggg 276
               |||||||||||||||
Sbjct: 6209937 ggcgccacctccggg 6209923




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 152     tggtcgacctggtcc 166
               |||||||||||||||
Sbjct: 6284097 tggtcgacctggtcc 6284111




 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 204     actggtgcgcctggg 218
               |||||||||||||||
Sbjct: 6484252 actggtgcgcctggg 6484238




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6074
Number of Sequences: 1
Number of extensions: 6074
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of query: 1154
length of database: 6,534,396
effective HSP length: 17
effective length of query: 1137
effective length of database: 6,534,379
effective search space: 7429588923
effective search space used: 7429588923
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)