BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (918 letters)

Distribution of 58 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           341   1e-93 



>GCTS_68 
          Length = 6534396

 Score =  341 bits (172), Expect = 1e-93
 Identities = 184/188 (97%)
 Strand = Plus / Plus

                                                                          
Query: 64     tacggcctggccatgctctccgcgcacaagggcgccaaaggtgaggagatcgccaggctc 123
              |||||||||||||||||||||||||||||||||||||||||  ||| ||||||| |||||
Sbjct: 750599 tacggcctggccatgctctccgcgcacaagggcgccaaaggccaggcgatcgcctggctc 750658

                                                                          
Query: 124    ggggtcaccttcctgctcggcgccgcgttcatcggcatggagatcaacgagttccaccac 183
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750659 ggggtcaccttcctgctcggcgccgcgttcatcggcatggagatcaacgagttccaccac 750718

                                                                          
Query: 184    ctgatcgccgaaggtttcggcccgagccgcagcgccttcctgtcgtccttcttcaccctg 243
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750719 ctgatcgccgaaggtttcggcccgagccgcagcgccttcctgtcgtccttcttcaccctg 750778

                      
Query: 244    gtcggcat 251
              ||||||||
Sbjct: 750779 gtcggcat 750786






 Score = 36.2 bits (18), Expect = 0.076
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 205     ccgagccgcagcgccttc 222
               ||||||||||||||||||
Sbjct: 5087405 ccgagccgcagcgccttc 5087388






 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 64     tacggcctggccatgct 80
              |||||||||||||||||
Sbjct: 503470 tacggcctggccatgct 503454






 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 114    cgccaggctcggggtca 130
              |||||||||||||||||
Sbjct: 944505 cgccaggctcggggtca 944489






 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 132     cttcctgctcggcgccg 148
               |||||||||||||||||
Sbjct: 1059136 cttcctgctcggcgccg 1059152






 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 225     gtcgtccttcttcaccc 241
               |||||||||||||||||
Sbjct: 1246015 gtcgtccttcttcaccc 1246031






 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 137     tgctcggcgccgcgttc 153
               |||||||||||||||||
Sbjct: 2427939 tgctcggcgccgcgttc 2427955






 Score = 34.2 bits (17), Expect = 0.30
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                        
Query: 135     cctgctcggcgccgcgttcatcggc 159
               |||||||||||||| | ||||||||
Sbjct: 2664120 cctgctcggcgccgtgctcatcggc 2664144






 Score = 34.2 bits (17), Expect = 0.30
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                    
Query: 141     cggcgccgcgttcatcggcat 161
               |||||||||||| ||||||||
Sbjct: 3197602 cggcgccgcgttgatcggcat 3197582






 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 212     gcagcgccttcctgtcg 228
               |||||||||||||||||
Sbjct: 3827961 gcagcgccttcctgtcg 3827945






 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 90      caagggcgccaaaggtg 106
               |||||||||||||||||
Sbjct: 4187511 caagggcgccaaaggtg 4187495






 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 132     cttcctgctcggcgccg 148
               |||||||||||||||||
Sbjct: 5164072 cttcctgctcggcgccg 5164056






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 189    cgccgaaggtttcggc 204
              ||||||||||||||||
Sbjct: 468471 cgccgaaggtttcggc 468486






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 137    tgctcggcgccgcgtt 152
              ||||||||||||||||
Sbjct: 730912 tgctcggcgccgcgtt 730927






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 66      cggcctggccatgctc 81
               ||||||||||||||||
Sbjct: 1044989 cggcctggccatgctc 1045004






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 66      cggcctggccatgctc 81
               ||||||||||||||||
Sbjct: 1087921 cggcctggccatgctc 1087936






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 153     catcggcatggagatc 168
               ||||||||||||||||
Sbjct: 1108184 catcggcatggagatc 1108199






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 182     acctgatcgccgaagg 197
               ||||||||||||||||
Sbjct: 2204944 acctgatcgccgaagg 2204959






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 83      ccgcgcacaagggcgc 98
               ||||||||||||||||
Sbjct: 2243420 ccgcgcacaagggcgc 2243405






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 201     cggcccgagccgcagc 216
               ||||||||||||||||
Sbjct: 2275520 cggcccgagccgcagc 2275505






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 114     cgccaggctcggggtcacct 133
               ||||||||||||| ||||||
Sbjct: 2883663 cgccaggctcgggatcacct 2883682






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 568     ttgatgattaattttt 583
               ||||||||||||||||
Sbjct: 2919866 ttgatgattaattttt 2919851






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 133     ttcctgctcggcgccg 148
               ||||||||||||||||
Sbjct: 5422204 ttcctgctcggcgccg 5422189






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 110     agatcgccaggctcgg 125
               ||||||||||||||||
Sbjct: 6297315 agatcgccaggctcgg 6297330






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                            
Query: 135   cctgctcggcgccgc 149
             |||||||||||||||
Sbjct: 17431 cctgctcggcgccgc 17417






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 183    cctgatcgccgaagg 197
              |||||||||||||||
Sbjct: 110964 cctgatcgccgaagg 110950






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 183    cctgatcgccgaagg 197
              |||||||||||||||
Sbjct: 211437 cctgatcgccgaagg 211423






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 66     cggcctggccatgct 80
              |||||||||||||||
Sbjct: 746198 cggcctggccatgct 746212






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 262    cccatcatctgcagg 276
              |||||||||||||||
Sbjct: 988623 cccatcatctgcagg 988609






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 135     cctgctcggcgccgcgttc 153
               |||| ||||||||||||||
Sbjct: 1918014 cctggtcggcgccgcgttc 1918032






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 139     ctcggcgccgcgttc 153
               |||||||||||||||
Sbjct: 2054118 ctcggcgccgcgttc 2054132






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 132     cttcctgctcggcgc 146
               |||||||||||||||
Sbjct: 2216160 cttcctgctcggcgc 2216146






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 64      tacggcctggccatg 78
               |||||||||||||||
Sbjct: 2332906 tacggcctggccatg 2332920






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 175     ttccaccacctgatc 189
               |||||||||||||||
Sbjct: 2351108 ttccaccacctgatc 2351122






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 106     gaggagatcgccagg 120
               |||||||||||||||
Sbjct: 2762253 gaggagatcgccagg 2762267






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 209     gccgcagcgccttcc 223
               |||||||||||||||
Sbjct: 2789617 gccgcagcgccttcc 2789631






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 131     ccttcctgctcggcg 145
               |||||||||||||||
Sbjct: 3143012 ccttcctgctcggcg 3143026






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 111     gatcgccaggctcgg 125
               |||||||||||||||
Sbjct: 3144623 gatcgccaggctcgg 3144609






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 178     caccacctgatcgcc 192
               |||||||||||||||
Sbjct: 3169200 caccacctgatcgcc 3169186






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 232     ttcttcaccctggtc 246
               |||||||||||||||
Sbjct: 3201706 ttcttcaccctggtc 3201692






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 130     accttcctgctcggc 144
               |||||||||||||||
Sbjct: 3291977 accttcctgctcggc 3291991






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 134     tcctgctcggcgccg 148
               |||||||||||||||
Sbjct: 3426422 tcctgctcggcgccg 3426436






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 128     tcaccttcctgctcg 142
               |||||||||||||||
Sbjct: 3679555 tcaccttcctgctcg 3679569






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 131     ccttcctgctcggcg 145
               |||||||||||||||
Sbjct: 3779170 ccttcctgctcggcg 3779184






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 179     accacctgatcgccg 193
               |||||||||||||||
Sbjct: 3878493 accacctgatcgccg 3878479






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 133     ttcctgctcggcgcc 147
               |||||||||||||||
Sbjct: 4081246 ttcctgctcggcgcc 4081260






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 206     cgagccgcagcgcct 220
               |||||||||||||||
Sbjct: 4447324 cgagccgcagcgcct 4447310






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 131     ccttcctgctcggcg 145
               |||||||||||||||
Sbjct: 4757411 ccttcctgctcggcg 4757397






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 136     ctgctcggcgccgcg 150
               |||||||||||||||
Sbjct: 5131493 ctgctcggcgccgcg 5131507






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 134     tcctgctcggcgccg 148
               |||||||||||||||
Sbjct: 5135988 tcctgctcggcgccg 5135974






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 66      cggcctggccatgct 80
               |||||||||||||||
Sbjct: 5503063 cggcctggccatgct 5503077






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 131     ccttcctgctcggcg 145
               |||||||||||||||
Sbjct: 5582636 ccttcctgctcggcg 5582622






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 106     gaggagatcgccagg 120
               |||||||||||||||
Sbjct: 5758413 gaggagatcgccagg 5758399






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 134     tcctgctcggcgccg 148
               |||||||||||||||
Sbjct: 5828436 tcctgctcggcgccg 5828450






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 132     cttcctgctcggcgc 146
               |||||||||||||||
Sbjct: 6000953 cttcctgctcggcgc 6000967






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 68      gcctggccatgctct 82
               |||||||||||||||
Sbjct: 6005883 gcctggccatgctct 6005869






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 134     tcctgctcggcgccg 148
               |||||||||||||||
Sbjct: 6069536 tcctgctcggcgccg 6069522






 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 206     cgagccgcagcgcct 220
               |||||||||||||||
Sbjct: 6499761 cgagccgcagcgcct 6499775






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4223
Number of Sequences: 1
Number of extensions: 4223
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of query: 918
length of database: 6,534,396
effective HSP length: 16
effective length of query: 902
effective length of database: 6,534,380
effective search space: 5894010760
effective search space used: 5894010760
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)