BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (998 letters)

Distribution of 69 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           569   e-162 

>GCTS_68 
          Length = 6534396

 Score =  569 bits (287), Expect = e-162
 Identities = 357/379 (94%), Gaps = 1/379 (0%)
 Strand = Plus / Plus

                                                                           
Query: 147     agagcacgtccggcctcggcgtcggggccactcaggagcttgccgactgcaaccgccgcg 206
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6087017 agagcacgtccggcctcggcgtcggggccactcaggagcttgccgactgcaaccgccgcg 6087076

                                                                           
Query: 207     ccaaccgccgctgctatcccggcaactgcggaggcgggcgatctcgtgtgtttcatatcg 266
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6087077 ccaaccgccgctgctatcccggcaactgcggaggcgggcgatctcgtgtgtttcatatcg 6087136

                                                                           
Query: 267     accttggcgatgttcatcgcatcctccggaagcatggggatggcgccttcggcgtcggtg 326
               ||||||||||||||||||||||||| | | ||||   || ||||||||||||||||||||
Sbjct: 6087137 accttggcgatgttcatcgcatccttctgcagcagctgggtggcgccttcggcgtcggtg 6087196

                                                                           
Query: 327     acgccctcgatgacctcgccgttggccatggtgatggtatagggcacgttgggcatggcc 386
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6087197 acgccctcgatgacctcgccgttggccatggtgatggtatagggcacgttgggcatggcc 6087256

                                                                           
Query: 387     gtctgcccgtccagttgcttgaggacgaaccgccgctgcgtctcgcccacctcgaactgc 446
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6087257 gtctgcccgtccagttgcttgaggacgaaccgccgctgcgtctcgcccacctcgaactgc 6087316

                                                                           
Query: 447     ggcaactcgacttccatagctggtcgcgacgacacgactgtgcttctacagcttgaccac 506
               |||| |||| ||||||  ||||| |||| ||||| |||||||||||  |  |||||||||
Sbjct: 6087317 ggcagctcggcttcca-ggctggccgcgccgacatgactgtgcttcgccgccttgaccac 6087375

                                  
Query: 507     aaacatgccggggatgccc 525
                ||  ||||||| ||||||
Sbjct: 6087376 gaagttgccgggcatgccc 6087394




 Score =  125 bits (63), Expect = 1e-28
 Identities = 63/63 (100%)
 Strand = Plus / Plus

                                                                           
Query: 63      tagtcctcgtcgcgcaggcggaccgtggaatagtcgatggagtcgccgaatacgtctttc 122
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6086933 tagtcctcgtcgcgcaggcggaccgtggaatagtcgatggagtcgccgaatacgtctttc 6086992

                  
Query: 123     gcc 125
               |||
Sbjct: 6086993 gcc 6086995




 Score = 36.2 bits (18), Expect = 0.083
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 311    gccttcggcgtcggtgac 328
              ||||||||||||||||||
Sbjct: 263409 gccttcggcgtcggtgac 263392




 Score = 36.2 bits (18), Expect = 0.083
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 340     cctcgccgttggccatgg 357
               ||||||||||||||||||
Sbjct: 4444005 cctcgccgttggccatgg 4443988




 Score = 34.2 bits (17), Expect = 0.33
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 122    cgcccatcatctgcagg 138
              |||||||||||||||||
Sbjct: 988625 cgcccatcatctgcagg 988609




 Score = 34.2 bits (17), Expect = 0.33
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 307     tggcgccttcggcgtcg 323
               |||||||||||||||||
Sbjct: 2454819 tggcgccttcggcgtcg 2454803




 Score = 34.2 bits (17), Expect = 0.33
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 158     ggcctcggcgtcggggc 174
               |||||||||||||||||
Sbjct: 5965876 ggcctcggcgtcggggc 5965892




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 67     cctcgtcgcgcaggcg 82
              ||||||||||||||||
Sbjct: 244199 cctcgtcgcgcaggcg 244184




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 333     tcgatgacctcgccgt 348
               ||||||||||||||||
Sbjct: 1269445 tcgatgacctcgccgt 1269460




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 263     atcgaccttggcgatg 278
               ||||||||||||||||
Sbjct: 1286181 atcgaccttggcgatg 1286196




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 70      cgtcgcgcaggcggac 85
               ||||||||||||||||
Sbjct: 1502417 cgtcgcgcaggcggac 1502432




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 202     ccgcgccaaccgccgc 217
               ||||||||||||||||
Sbjct: 1576464 ccgcgccaaccgccgc 1576479




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 443     ctgcggcaactcgact 458
               ||||||||||||||||
Sbjct: 1928785 ctgcggcaactcgact 1928800




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 348     ttggccatggtgatgg 363
               ||||||||||||||||
Sbjct: 2339754 ttggccatggtgatgg 2339739




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 367     agggcacgttgggcat 382
               ||||||||||||||||
Sbjct: 2385768 agggcacgttgggcat 2385783




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 219     gctatcccggcaactg 234
               ||||||||||||||||
Sbjct: 2684473 gctatcccggcaactg 2684488




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 317     ggcgtcggtgacgccctcga 336
               ||||||||||||| ||||||
Sbjct: 3282234 ggcgtcggtgacgtcctcga 3282215




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 394     cgtccagttgcttgag 409
               ||||||||||||||||
Sbjct: 3465977 cgtccagttgcttgag 3465992




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 222     atcccggcaactgcgg 237
               ||||||||||||||||
Sbjct: 3822151 atcccggcaactgcgg 3822166




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 193     ctgcaaccgccgcgcc 208
               ||||||||||||||||
Sbjct: 3852907 ctgcaaccgccgcgcc 3852922




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 65      gtcctcgtcgcgcagg 80
               ||||||||||||||||
Sbjct: 4280481 gtcctcgtcgcgcagg 4280466




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 263     atcgaccttggcgatgttca 282
               |||| |||||||||||||||
Sbjct: 4387938 atcggccttggcgatgttca 4387919




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 354     atggtgatggtatagg 369
               ||||||||||||||||
Sbjct: 4860304 atggtgatggtatagg 4860319




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 333     tcgatgacctcgccgttggc 352
               |||||||||||||| |||||
Sbjct: 4986153 tcgatgacctcgcccttggc 4986134




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 305     gatggcgccttcggcg 320
               ||||||||||||||||
Sbjct: 5042204 gatggcgccttcggcg 5042219




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 316     cggcgtcggtgacgccctcg 335
               ||||| ||||||||||||||
Sbjct: 6168322 cggcggcggtgacgccctcg 6168303




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 309     gcgccttcggcgtcgg 324
               ||||||||||||||||
Sbjct: 6340484 gcgccttcggcgtcgg 6340499




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 312     ccttcggcgtcggtgacgcc 331
               ||||||||||||||| ||||
Sbjct: 6521142 ccttcggcgtcggtgccgcc 6521123




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 156    ccggcctcggcgtcg 170
              |||||||||||||||
Sbjct: 262988 ccggcctcggcgtcg 263002




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 115    cgtctttcgcccatc 129
              |||||||||||||||
Sbjct: 355012 cgtctttcgcccatc 355026




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 334    cgatgacctcgccgt 348
              |||||||||||||||
Sbjct: 409728 cgatgacctcgccgt 409714




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 157     cggcctcggcgtcgg 171
               |||||||||||||||
Sbjct: 1082860 cggcctcggcgtcgg 1082874




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 410     gacgaaccgccgctg 424
               |||||||||||||||
Sbjct: 1163894 gacgaaccgccgctg 1163880




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 396     tccagttgcttgagg 410
               |||||||||||||||
Sbjct: 1414663 tccagttgcttgagg 1414677




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 321     tcggtgacgccctcg 335
               |||||||||||||||
Sbjct: 1437038 tcggtgacgccctcg 1437052




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 68      ctcgtcgcgcaggcg 82
               |||||||||||||||
Sbjct: 1477027 ctcgtcgcgcaggcg 1477013




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 68      ctcgtcgcgcaggcg 82
               |||||||||||||||
Sbjct: 1480633 ctcgtcgcgcaggcg 1480619




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 70      cgtcgcgcaggcgga 84
               |||||||||||||||
Sbjct: 1530230 cgtcgcgcaggcgga 1530244




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 193     ctgcaaccgccgcgc 207
               |||||||||||||||
Sbjct: 2035634 ctgcaaccgccgcgc 2035620




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 343     cgccgttggccatgg 357
               |||||||||||||||
Sbjct: 2061020 cgccgttggccatgg 2061006




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 69      tcgtcgcgcaggcgg 83
               |||||||||||||||
Sbjct: 2158816 tcgtcgcgcaggcgg 2158802




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 134     gcaggcctggccaag 148
               |||||||||||||||
Sbjct: 2486623 gcaggcctggccaag 2486609




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 310     cgccttcggcgtcgg 324
               |||||||||||||||
Sbjct: 2786124 cgccttcggcgtcgg 2786138




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 272     ggcgatgttcatcgc 286
               |||||||||||||||
Sbjct: 2946906 ggcgatgttcatcgc 2946920




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 555     cgaagatcgccccct 569
               |||||||||||||||
Sbjct: 2960455 cgaagatcgccccct 2960469




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 68      ctcgtcgcgcaggcg 82
               |||||||||||||||
Sbjct: 2987668 ctcgtcgcgcaggcg 2987682




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 69      tcgtcgcgcaggcgg 83
               |||||||||||||||
Sbjct: 3135140 tcgtcgcgcaggcgg 3135126




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 122     cgcccatcatctgca 136
               |||||||||||||||
Sbjct: 3285616 cgcccatcatctgca 3285602




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 157     cggcctcggcgtcgg 171
               |||||||||||||||
Sbjct: 3323908 cggcctcggcgtcgg 3323922




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 74      gcgcaggcggaccgt 88
               |||||||||||||||
Sbjct: 3417249 gcgcaggcggaccgt 3417235




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 380     catggccgtctgcccgtcc 398
               |||||||||||| ||||||
Sbjct: 3695724 catggccgtctggccgtcc 3695742




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 312     ccttcggcgtcggtg 326
               |||||||||||||||
Sbjct: 3718143 ccttcggcgtcggtg 3718129




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 343     cgccgttggccatgg 357
               |||||||||||||||
Sbjct: 4090095 cgccgttggccatgg 4090081




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 398     cagttgcttgaggac 412
               |||||||||||||||
Sbjct: 4108494 cagttgcttgaggac 4108508




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 337     tgacctcgccgttgg 351
               |||||||||||||||
Sbjct: 4347263 tgacctcgccgttgg 4347277




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 195     gcaaccgccgcgcca 209
               |||||||||||||||
Sbjct: 4365164 gcaaccgccgcgcca 4365150




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 434     cacctcgaactgcgg 448
               |||||||||||||||
Sbjct: 4678217 cacctcgaactgcgg 4678231




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 337     tgacctcgccgttgg 351
               |||||||||||||||
Sbjct: 4835376 tgacctcgccgttgg 4835362




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 333     tcgatgacctcgccg 347
               |||||||||||||||
Sbjct: 4866781 tcgatgacctcgccg 4866795




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 374     gttgggcatggccgt 388
               |||||||||||||||
Sbjct: 4940202 gttgggcatggccgt 4940216




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 342     tcgccgttggccatg 356
               |||||||||||||||
Sbjct: 4942069 tcgccgttggccatg 4942055




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 410     gacgaaccgccgctg 424
               |||||||||||||||
Sbjct: 5060512 gacgaaccgccgctg 5060526




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 238     aggcgggcgatctcg 252
               |||||||||||||||
Sbjct: 5203463 aggcgggcgatctcg 5203477




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 188     gccgactgcaaccgccgcg 206
               ||||||| |||||||||||
Sbjct: 5370438 gccgacttcaaccgccgcg 5370456




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 815     gctcggtccaccctc 829
               |||||||||||||||
Sbjct: 5392369 gctcggtccaccctc 5392383




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 234     gcggaggcgggcgat 248
               |||||||||||||||
Sbjct: 5938049 gcggaggcgggcgat 5938035




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 436     cctcgaactgcggca 450
               |||||||||||||||
Sbjct: 6161439 cctcgaactgcggca 6161453




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 310     cgccttcggcgtcgg 324
               |||||||||||||||
Sbjct: 6363550 cgccttcggcgtcgg 6363536




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 69      tcgtcgcgcaggcgg 83
               |||||||||||||||
Sbjct: 6457525 tcgtcgcgcaggcgg 6457539




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6552
Number of Sequences: 1
Number of extensions: 6552
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of query: 998
length of database: 6,534,396
effective HSP length: 17
effective length of query: 981
effective length of database: 6,534,379
effective search space: 6410225799
effective search space used: 6410225799
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)