BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (978 letters)

Distribution of 64 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           355   7e-98 



>GCTS_68 
          Length = 6534396

 Score =  355 bits (179), Expect = 7e-98
 Identities = 182/183 (99%)
 Strand = Plus / Plus

                                                                           
Query: 65      taggccagcaccgcgccggccgggccgccctggttgatggtcacgccggagcccatgaac 124
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5130021 taggccagcaccgcgccggccgggccgccctggttgatggtcacgccggagcccatgaac 5130080

                                                                           
Query: 125     agcccggtgccgatcaccccgccgagggacagcatgaagatgtggcggctcgccagggcc 184
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5130081 agcccggtgccgatcaccccgccgagggacagcatgaagatgtggcggctcgccagggcc 5130140

                                                                           
Query: 185     cgggtgagttgcagcctttccttgccgtcagccatggcgcacctccggatgaggatacgc 244
               |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 5130141 cgggtgagttgcagcctttccttgccgtcagccatggcgcacctccggatgagggtacgc 5130200

                  
Query: 245     gca 247
               |||
Sbjct: 5130201 gca 5130203






 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                   
Query: 109     gccggagcccatgaacagcccggtgccgatcaccccgccgagggacagcatg 160
               ||||||||| | |||||| |||| ||||||||||||| |||  |||||||||
Sbjct: 5946513 gccggagccgacgaacaggccggcgccgatcaccccggcgatcgacagcatg 5946564






 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 121     gaacagcccggtgccgatcaccccgcc 147
               ||||||||||||||||||| |||||||
Sbjct: 2743648 gaacagcccggtgccgatcgccccgcc 2743674






 Score = 40.1 bits (20), Expect = 0.005
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 115     gcccatgaacagcccggtgccgat 138
               |||||||||||| |||||||||||
Sbjct: 1606332 gcccatgaacaggccggtgccgat 1606355






 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 68      gccagcaccgcgccggccgg 87
               ||||||||||||||||||||
Sbjct: 5397661 gccagcaccgcgccggccgg 5397680






 Score = 38.2 bits (19), Expect = 0.021
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 210    cgtcagccatggcgcacctccgg 232
              |||||| ||||||||||||||||
Sbjct: 552108 cgtcagacatggcgcacctccgg 552130






 Score = 38.2 bits (19), Expect = 0.021
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 75      ccgcgccggccgggccgcc 93
               |||||||||||||||||||
Sbjct: 1182984 ccgcgccggccgggccgcc 1182966






 Score = 38.2 bits (19), Expect = 0.021
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 79      gccggccgggccgccctgg 97
               |||||||||||||||||||
Sbjct: 4782641 gccggccgggccgccctgg 4782659






 Score = 36.2 bits (18), Expect = 0.081
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                            
Query: 122    aacagcccggtgccgatcaccccgccgagg 151
              |||||| ||||||||||| | |||||||||
Sbjct: 656007 aacagcgcggtgccgatcgcgccgccgagg 656036






 Score = 36.2 bits (18), Expect = 0.081
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 167     tggcggctcgccagggcccggg 188
               ||||||||||||||||| ||||
Sbjct: 2978116 tggcggctcgccagggcgcggg 2978137






 Score = 36.2 bits (18), Expect = 0.081
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 139     caccccgccgagggacagcatg 160
               ||||||||||||| ||||||||
Sbjct: 4373982 caccccgccgaggaacagcatg 4374003






 Score = 36.2 bits (18), Expect = 0.081
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 121     gaacagcccggtgccgat 138
               ||||||||||||||||||
Sbjct: 4731133 gaacagcccggtgccgat 4731116






 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 66     aggccagcaccgcgccg 82
              |||||||||||||||||
Sbjct: 504774 aggccagcaccgcgccg 504790






 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 129     cggtgccgatcaccccg 145
               |||||||||||||||||
Sbjct: 1078983 cggtgccgatcaccccg 1078967






 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 133     gccgatcaccccgccga 149
               |||||||||||||||||
Sbjct: 2866842 gccgatcaccccgccga 2866858






 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 72      gcaccgcgccggccggg 88
               |||||||||||||||||
Sbjct: 4092995 gcaccgcgccggccggg 4093011






 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 87      ggccgccctggttgatg 103
               |||||||||||||||||
Sbjct: 4723206 ggccgccctggttgatg 4723222






 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 87      ggccgccctggttgatg 103
               |||||||||||||||||
Sbjct: 4725144 ggccgccctggttgatg 4725160






 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 66      aggccagcaccgcgccg 82
               |||||||||||||||||
Sbjct: 6190321 aggccagcaccgcgccg 6190305






 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 217     catggcgcacctccgga 233
               |||||||||||||||||
Sbjct: 6521507 catggcgcacctccgga 6521523






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                             
Query: 121   gaacagcccggtgccg 136
             ||||||||||||||||
Sbjct: 29078 gaacagcccggtgccg 29063






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 121    gaacagcccggtgccg 136
              ||||||||||||||||
Sbjct: 123551 gaacagcccggtgccg 123566






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 28/32 (87%)
 Strand = Plus / Minus

                                              
Query: 121    gaacagcccggtgccgatcaccccgccgaggg 152
              |||||| |||||||||||  | ||||||||||
Sbjct: 249608 gaacaggccggtgccgatggcgccgccgaggg 249577






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 112    ggagcccatgaacagc 127
              ||||||||||||||||
Sbjct: 446396 ggagcccatgaacagc 446381






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                  
Query: 129    cggtgccgatcaccccgccg 148
              |||||||||||||| |||||
Sbjct: 621934 cggtgccgatcaccacgccg 621915






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                  
Query: 128    ccggtgccgatcaccccgcc 147
              |||| |||||||||||||||
Sbjct: 672758 ccggggccgatcaccccgcc 672739






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 87      ggccgccctggttgat 102
               ||||||||||||||||
Sbjct: 2489856 ggccgccctggttgat 2489871






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 22      ggcatcatctgctgga 37
               ||||||||||||||||
Sbjct: 4347757 ggcatcatctgctgga 4347772






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 130     ggtgccgatcaccccg 145
               ||||||||||||||||
Sbjct: 4460241 ggtgccgatcaccccg 4460256






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 130     ggtgccgatcaccccg 145
               ||||||||||||||||
Sbjct: 4465816 ggtgccgatcaccccg 4465831






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 93      cctggttgatggtcac 108
               ||||||||||||||||
Sbjct: 4864664 cctggttgatggtcac 4864679






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                       
Query: 113     gagcccatgaacagcccggtgccg 136
               ||||| |||||||||||| |||||
Sbjct: 5196670 gagccgatgaacagcccgatgccg 5196647






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 130     ggtgccgatcaccccg 145
               ||||||||||||||||
Sbjct: 5444453 ggtgccgatcaccccg 5444468






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 66      aggccagcaccgcgccggcc 85
               ||||| ||||||||||||||
Sbjct: 5887730 aggccggcaccgcgccggcc 5887749






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                            
Query: 166   gtggcggctcgccag 180
             |||||||||||||||
Sbjct: 46934 gtggcggctcgccag 46948






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 117    ccatgaacagcccgg 131
              |||||||||||||||
Sbjct: 270276 ccatgaacagcccgg 270262






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 135    cgatcaccccgccga 149
              |||||||||||||||
Sbjct: 451618 cgatcaccccgccga 451604






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 135    cgatcaccccgccga 149
              |||||||||||||||
Sbjct: 458622 cgatcaccccgccga 458608






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 522    ataccagaacaatgc 536
              |||||||||||||||
Sbjct: 618093 ataccagaacaatgc 618079






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 133    gccgatcaccccgcc 147
              |||||||||||||||
Sbjct: 712171 gccgatcaccccgcc 712185






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                 
Query: 168    ggcggctcgccagggcccg 186
              ||||||| |||||||||||
Sbjct: 784983 ggcggctggccagggcccg 784965






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 128    ccggtgccgatcacc 142
              |||||||||||||||
Sbjct: 987233 ccggtgccgatcacc 987247






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 345     acctcgagttcaccc 359
               |||||||||||||||
Sbjct: 1504658 acctcgagttcaccc 1504644






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 128     ccggtgccgatcacc 142
               |||||||||||||||
Sbjct: 1626041 ccggtgccgatcacc 1626027






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 151     ggacagcatgaagat 165
               |||||||||||||||
Sbjct: 1689737 ggacagcatgaagat 1689723






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 79      gccggccgggccgcc 93
               |||||||||||||||
Sbjct: 1897618 gccggccgggccgcc 1897604






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 137     atcaccccgccgagg 151
               |||||||||||||||
Sbjct: 2356807 atcaccccgccgagg 2356793






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 131     gtgccgatcaccccg 145
               |||||||||||||||
Sbjct: 2730639 gtgccgatcaccccg 2730653






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 84      ccgggccgccctggttgat 102
               |||||| ||||||||||||
Sbjct: 3491723 ccgggcggccctggttgat 3491705






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 95      tggttgatggtcacgccgg 113
               |||| ||||||||||||||
Sbjct: 3523201 tggtcgatggtcacgccgg 3523219






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 79      gccggccgggccgccctgg 97
               ||||||| |||||||||||
Sbjct: 4148936 gccggcctggccgccctgg 4148954






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 75      ccgcgccggccgggc 89
               |||||||||||||||
Sbjct: 4151754 ccgcgccggccgggc 4151740






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 71      agcaccgcgccggcc 85
               |||||||||||||||
Sbjct: 4227475 agcaccgcgccggcc 4227489






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 73      caccgcgccggccgggccg 91
               ||||||||||||| |||||
Sbjct: 4292298 caccgcgccggcctggccg 4292280






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 121     gaacagcccggtgccgatc 139
               |||| ||||||||||||||
Sbjct: 4468294 gaacggcccggtgccgatc 4468276






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 70      cagcaccgcgccggc 84
               |||||||||||||||
Sbjct: 4470164 cagcaccgcgccggc 4470150






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 23      gcatcatctgctgga 37
               |||||||||||||||
Sbjct: 4472705 gcatcatctgctgga 4472691






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 68      gccagcaccgcgccg 82
               |||||||||||||||
Sbjct: 4486212 gccagcaccgcgccg 4486198






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 174     tcgccagggcccggg 188
               |||||||||||||||
Sbjct: 5153248 tcgccagggcccggg 5153234






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 174     tcgccagggcccggg 188
               |||||||||||||||
Sbjct: 5186840 tcgccagggcccggg 5186826






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 121     gaacagcccggtgccgatc 139
               |||||| ||||||||||||
Sbjct: 5275689 gaacaggccggtgccgatc 5275707






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 132     tgccgatcaccccgccgag 150
               ||||||||||| |||||||
Sbjct: 5985103 tgccgatcaccgcgccgag 5985121






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 72      gcaccgcgccggccg 86
               |||||||||||||||
Sbjct: 6031044 gcaccgcgccggccg 6031058






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 75      ccgcgccggccgggc 89
               |||||||||||||||
Sbjct: 6342717 ccgcgccggccgggc 6342703






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3952
Number of Sequences: 1
Number of extensions: 3952
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of query: 978
length of database: 6,534,396
effective HSP length: 16
effective length of query: 962
effective length of database: 6,534,380
effective search space: 6286073560
effective search space used: 6286073560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)