BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (845 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           305   5e-83 

>GCTS_68 
          Length = 6534396

 Score =  305 bits (154), Expect = 5e-83
 Identities = 154/154 (100%)
 Strand = Plus / Minus

                                                                           
Query: 60      tacacggccagcacgaagatgatcaggttgtagatcccgtcagaaatgatatccatcgtt 119
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6023427 tacacggccagcacgaagatgatcaggttgtagatcccgtcagaaatgatatccatcgtt 6023368

                                                                           
Query: 120     ttcaccggtcttcagggcgcaggcgcgaggcgtgcgcatttatcgttatcgaagcttccc 179
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6023367 ttcaccggtcttcagggcgcaggcgcgaggcgtgcgcatttatcgttatcgaagcttccc 6023308

                                                 
Query: 180     gacgcagcggctcagccgttcttgcgcaccgcct 213
               ||||||||||||||||||||||||||||||||||
Sbjct: 6023307 gacgcagcggctcagccgttcttgcgcaccgcct 6023274




 Score = 36.2 bits (18), Expect = 0.070
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 74      gaagatgatcaggttgtagatc 95
               |||||||| |||||||||||||
Sbjct: 3884047 gaagatgaacaggttgtagatc 3884068




 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 827    cccctttttccttcttt 843
              |||||||||||||||||
Sbjct: 193784 cccctttttccttcttt 193768




 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 129    cttcagggcgcaggcgc 145
              |||||||||||||||||
Sbjct: 351074 cttcagggcgcaggcgc 351058




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 173    gcttcccgacgcagcg 188
              ||||||||||||||||
Sbjct: 422280 gcttcccgacgcagcg 422265




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 124     ccggtcttcagggcgc 139
               ||||||||||||||||
Sbjct: 3622848 ccggtcttcagggcgc 3622833




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 825     cccccctttttccttc 840
               ||||||||||||||||
Sbjct: 6228360 cccccctttttccttc 6228375




 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 132    cagggcgcaggcgcg 146
              |||||||||||||||
Sbjct: 659276 cagggcgcaggcgcg 659290




 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 132     cagggcgcaggcgcg 146
               |||||||||||||||
Sbjct: 1890008 cagggcgcaggcgcg 1889994




 Score = 30.2 bits (15), Expect = 4.3
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 77      gatgatcaggttgtagatc 95
               ||||| |||||||||||||
Sbjct: 2320444 gatgaacaggttgtagatc 2320426




 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 182     cgcagcggctcagcc 196
               |||||||||||||||
Sbjct: 2474167 cgcagcggctcagcc 2474181




 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 508     ctgggtgctcggata 522
               |||||||||||||||
Sbjct: 2866109 ctgggtgctcggata 2866123




 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 199     tcttgcgcaccgcct 213
               |||||||||||||||
Sbjct: 3886911 tcttgcgcaccgcct 3886897




 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 79      tgatcaggttgtaga 93
               |||||||||||||||
Sbjct: 4606798 tgatcaggttgtaga 4606784




 Score = 30.2 bits (15), Expect = 4.3
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 217     cgccgggcacatcatctgcaggc 239
               |||||||||||||| | ||||||
Sbjct: 4758328 cgccgggcacatcaccagcaggc 4758350




 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 688     tcttcgcccgtttgg 702
               |||||||||||||||
Sbjct: 4828614 tcttcgcccgtttgg 4828600




 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 699     ttggcggttccttgt 713
               |||||||||||||||
Sbjct: 5024128 ttggcggttccttgt 5024114




 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 124     ccggtcttcagggcg 138
               |||||||||||||||
Sbjct: 5125753 ccggtcttcagggcg 5125767




 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 132     cagggcgcaggcgcg 146
               |||||||||||||||
Sbjct: 5146123 cagggcgcaggcgcg 5146137




 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 215     cccgccgggcacatc 229
               |||||||||||||||
Sbjct: 5862961 cccgccgggcacatc 5862947




 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 219     ccgggcacatcatct 233
               |||||||||||||||
Sbjct: 6254314 ccgggcacatcatct 6254328




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2508
Number of Sequences: 1
Number of extensions: 2508
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of query: 845
length of database: 6,534,396
effective HSP length: 16
effective length of query: 829
effective length of database: 6,534,380
effective search space: 5417001020
effective search space used: 5417001020
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)