BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (935 letters)

Distribution of 34 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           729   0.0   

>GCTS_68 
          Length = 6534396

 Score =  729 bits (368), Expect = 0.0
 Identities = 368/368 (100%)
 Strand = Plus / Minus

                                                                           
Query: 60      tagctcttctgcacgccacggaagctgaccagtacatcgccgccttgagtctcggccata 119
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6479005 tagctcttctgcacgccacggaagctgaccagtacatcgccgccttgagtctcggccata 6478946

                                                                           
Query: 120     accgcacctttgttcgttttatggatgctgtgcgaacagcctagagaacccggcgcagga 179
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6478945 accgcacctttgttcgttttatggatgctgtgcgaacagcctagagaacccggcgcagga 6478886

                                                                           
Query: 180     cgcaaatcggccggcaagagagttttctatcaggggaaaggaaagctctttgtaggaatc 239
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6478885 cgcaaatcggccggcaagagagttttctatcaggggaaaggaaagctctttgtaggaatc 6478826

                                                                           
Query: 240     gccctacaaaaaagatgcaccccggaatgggccagaccgctctgggaaggggctttcgag 299
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6478825 gccctacaaaaaagatgcaccccggaatgggccagaccgctctgggaaggggctttcgag 6478766

                                                                           
Query: 300     aagggcaaaggtttgcgcgccagcgctctccggctggcgcgcaacggcgtcctcagcgct 359
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6478765 aagggcaaaggtttgcgcgccagcgctctccggctggcgcgcaacggcgtcctcagcgct 6478706

                                                                           
Query: 360     tggcccagttctggaaacgctgctccagggcctcgccgtgctccgcccagaaggccacgt 419
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6478705 tggcccagttctggaaacgctgctccagggcctcgccgtgctccgcccagaaggccacgt 6478646

                       
Query: 420     tcataccc 427
               ||||||||
Sbjct: 6478645 tcataccc 6478638




 Score = 34.2 bits (17), Expect = 0.31
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 334     tggcgcgcaacggcgtc 350
               |||||||||||||||||
Sbjct: 2374681 tggcgcgcaacggcgtc 2374665




 Score = 34.2 bits (17), Expect = 0.31
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 380     tgctccagggcctcgcc 396
               |||||||||||||||||
Sbjct: 2460966 tgctccagggcctcgcc 2460982




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 382    ctccagggcctcgccg 397
              ||||||||||||||||
Sbjct: 187693 ctccagggcctcgccg 187708




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                  
Query: 306    aaaggtttgcgcgccagcgc 325
              |||||| |||||||||||||
Sbjct: 345997 aaaggtatgcgcgccagcgc 345978




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                  
Query: 384    ccagggcctcgccgtgctcc 403
              |||||||||||| |||||||
Sbjct: 526255 ccagggcctcgcggtgctcc 526236




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 329     ccggctggcgcgcaacggcg 348
               |||||||||||||| |||||
Sbjct: 1480552 ccggctggcgcgcagcggcg 1480571




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 379     ctgctccagggcctcg 394
               ||||||||||||||||
Sbjct: 2524852 ctgctccagggcctcg 2524867




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 74      gccacggaagctgacc 89
               ||||||||||||||||
Sbjct: 2694668 gccacggaagctgacc 2694683




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 322     gcgctctccggctggc 337
               ||||||||||||||||
Sbjct: 3948438 gcgctctccggctggc 3948453




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 68      ctgcacgccacggaag 83
               ||||||||||||||||
Sbjct: 3994690 ctgcacgccacggaag 3994705




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 382     ctccagggcctcgccg 397
               ||||||||||||||||
Sbjct: 4134395 ctccagggcctcgccg 4134410




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 181     gcaaatcggccggcaa 196
               ||||||||||||||||
Sbjct: 4447500 gcaaatcggccggcaa 4447515




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 382     ctccagggcctcgccg 397
               ||||||||||||||||
Sbjct: 5750093 ctccagggcctcgccg 5750108




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 333    ctggcgcgcaacggc 347
              |||||||||||||||
Sbjct: 526338 ctggcgcgcaacggc 526324




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 383    tccagggcctcgccg 397
              |||||||||||||||
Sbjct: 586551 tccagggcctcgccg 586537




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 378    gctgctccagggcct 392
              |||||||||||||||
Sbjct: 612556 gctgctccagggcct 612570




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 310    gtttgcgcgccagcg 324
              |||||||||||||||
Sbjct: 893087 gtttgcgcgccagcg 893073




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 331     ggctggcgcgcaacg 345
               |||||||||||||||
Sbjct: 1175557 ggctggcgcgcaacg 1175571




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 214     ggaaaggaaagctct 228
               |||||||||||||||
Sbjct: 1659039 ggaaaggaaagctct 1659053




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 373     gaaacgctgctccag 387
               |||||||||||||||
Sbjct: 1985797 gaaacgctgctccag 1985811




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 391     ctcgccgtgctccgc 405
               |||||||||||||||
Sbjct: 2112774 ctcgccgtgctccgc 2112788




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 378     gctgctccagggcct 392
               |||||||||||||||
Sbjct: 2178284 gctgctccagggcct 2178298




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 327     ctccggctggcgcgc 341
               |||||||||||||||
Sbjct: 2378578 ctccggctggcgcgc 2378592




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 388     ggcctcgccgtgctc 402
               |||||||||||||||
Sbjct: 2457644 ggcctcgccgtgctc 2457630




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 347     cgtcctcagcgcttg 361
               |||||||||||||||
Sbjct: 3036364 cgtcctcagcgcttg 3036378




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 258     accccggaatgggcc 272
               |||||||||||||||
Sbjct: 3491438 accccggaatgggcc 3491452




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 93      acatcgccgccttga 107
               |||||||||||||||
Sbjct: 4477462 acatcgccgccttga 4477448




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 95      atcgccgccttgagt 109
               |||||||||||||||
Sbjct: 4646004 atcgccgccttgagt 4646018




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 334     tggcgcgcaacggcgtcct 352
               |||||||||||||| ||||
Sbjct: 4933054 tggcgcgcaacggcttcct 4933036




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 260     cccggaatgggccag 274
               |||||||||||||||
Sbjct: 5294930 cccggaatgggccag 5294944




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 334     tggcgcgcaacggcg 348
               |||||||||||||||
Sbjct: 5392248 tggcgcgcaacggcg 5392262




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 404     gcccagaaggccacgttca 422
               ||||||||||||| |||||
Sbjct: 5895404 gcccagaaggccaggttca 5895422




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 333     ctggcgcgcaacggc 347
               |||||||||||||||
Sbjct: 6246337 ctggcgcgcaacggc 6246323




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3654
Number of Sequences: 1
Number of extensions: 3654
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of query: 935
length of database: 6,534,396
effective HSP length: 16
effective length of query: 919
effective length of database: 6,534,380
effective search space: 6005095220
effective search space used: 6005095220
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)