BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= (928 letters)

Distribution of 61 Blast Hits on the Query Sequence




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           676   0.0   
>GCTS_68 
          Length = 6534396

 Score =  676 bits (341), Expect = 0.0
 Identities = 409/421 (97%), Gaps = 8/421 (1%)
 Strand = Plus / Plus

                                                                           
Query: 245     cgagaactgctgctgcgggcgcggatcaacgatgcggcgcgggcggtgatgctggcatac 304
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6491607 cgagaactgctgctgcgggcgcggatcaacgatgcggcgcgggcggtgatgctggcatac 6491666

                                                                           
Query: 305     gccagcggtgccgatctcgaccagatcggtgccggcttcaatgtgcagcgtttgctgatc 364
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6491667 gccagcggtgccgatctcgaccagatcggtgccggcttcaatgtgcagcgtttgctgatc 6491726

                                                                           
Query: 365     aggcccgctcagcccgaggcggtaccgccggtggaggcgcagtacgagagcgacaagtcg 424
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6491727 aggcccgctcagcccgaggcggtaccgccggtggaggcgcagtacgagagcgacaagtcg 6491786

                                                                           
Query: 425     ctgcgcaatcgcatccagctcgcgttcgagcagctatccgtcgcaggaccgcggaacgcc 484
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6491787 ctgcgcaatcgcatccagctcgcgttcgagcagctatccgtcgcaggaccgcggaacgcc 6491846

                                                                           
Query: 485     tatatagccaatgcgctgggcgcggatggaacggtggcggatgcctctgcgaccagtccg 544
               ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 6491847 tatatagcccatgcgctgggcgcggatggaagggtggcggatgcctctgcgaccagtccg 6491906

                                                                           
Query: 545     gcgccctgcgaagtgctgatcaacgtgctcgggggtggaaggcaacgggcaggccccgga 604
               |||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||
Sbjct: 6491907 gcgccctgcgaagtgctgatcagcgtgctc-ggggtggaaggcaacgggcaggcaccgga 6491965

                                                                           
Query: 605     atgcggtgtttgca-gcagtagcgcctggctgctgaacgcggtaggacgttgcgtcctgt 663
               | |||||| ||||| ||||| ||||||||| ||||||||||| |||||| ||||||||||
Sbjct: 6491966 a-gcggtg-ttgcaggcagt-gcgcctggc-gctgaacgcgg-aggacg-tgcgtcctgt 6492019

                
Query: 664     c 664
               |
Sbjct: 6492020 c 6492020

 Score =  315 bits (159), Expect = 6e-86
 Identities = 162/163 (99%)
 Strand = Plus / Plus

                                                                           
Query: 62      tatggaggtctcggcgtgatcatcgatctttcccagttgccggagccagaggttatcgaa 121
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6491424 tatggaggtctcggcgtgatcatcgatctttcccagttgccggagccagaggttatcgaa 6491483

                                                                           
Query: 122     aacctcgatttcgagacgatttaccaagagctgttgggcgacttccgcgaagccatggct 181
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6491484 aacctcgatttcgagacgatttaccaagagctgttgggcgacttccgcgaagccatggct 6491543

                                                          
Query: 182     ggcgaatggacagcggaggtggagtcggatacggttctcaagc 224
               |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6491544 ggcgaatggacagcggaggtggagtcggatccggttctcaagc 6491586

 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 249     aactgctgctgcgggcg 265
               |||||||||||||||||
Sbjct: 1886915 aactgctgctgcgggcg 1886899

 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 442     gctcgcgttcgagcagc 458
               |||||||||||||||||
Sbjct: 1929114 gctcgcgttcgagcagc 1929098

 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 552     gcgaagtgctgatcaac 568
               |||||||||||||||||
Sbjct: 2352914 gcgaagtgctgatcaac 2352930

 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 595     aggccccggaatgcggt 611
               |||||||||||||||||
Sbjct: 5340154 aggccccggaatgcggt 5340138

 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 624     agcgcctggctgctgaa 640
               |||||||||||||||||
Sbjct: 5883519 agcgcctggctgctgaa 5883503

 Score = 34.2 bits (17), Expect = 0.30
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                    
Query: 384     cggtaccgccggtggaggcgc 404
               |||| ||||||||||||||||
Sbjct: 5997758 cggtgccgccggtggaggcgc 5997778

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 390    cgccggtggaggcgca 405
              ||||||||||||||||
Sbjct: 187326 cgccggtggaggcgca 187341

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 444     tcgcgttcgagcagct 459
               ||||||||||||||||
Sbjct: 2325239 tcgcgttcgagcagct 2325254

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 578     ggtggaaggcaacggg 593
               ||||||||||||||||
Sbjct: 2655445 ggtggaaggcaacggg 2655430

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 354     gtttgctgatcaggcc 369
               ||||||||||||||||
Sbjct: 4334614 gtttgctgatcaggcc 4334599

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 550     ctgcgaagtgctgatcaacg 569
               |||||||||||||| |||||
Sbjct: 5417663 ctgcgaagtgctgaccaacg 5417644

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 279     cggcgcgggcggtgat 294
               ||||||||||||||||
Sbjct: 5558589 cggcgcgggcggtgat 5558604

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 434    cgcatccagctcgcg 448
              |||||||||||||||
Sbjct: 159932 cgcatccagctcgcg 159918

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 251    ctgctgctgcgggcg 265
              |||||||||||||||
Sbjct: 448895 ctgctgctgcgggcg 448909

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 262    ggcgcggatcaacga 276
              |||||||||||||||
Sbjct: 593865 ggcgcggatcaacga 593879

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 278    gcggcgcgggcggtg 292
              |||||||||||||||
Sbjct: 716776 gcggcgcgggcggtg 716790

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 274    cgatgcggcgcgggc 288
              |||||||||||||||
Sbjct: 917662 cgatgcggcgcgggc 917676

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 559     gctgatcaacgtgct 573
               |||||||||||||||
Sbjct: 1093255 gctgatcaacgtgct 1093269

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 257     ctgcgggcgcggatc 271
               |||||||||||||||
Sbjct: 1131582 ctgcgggcgcggatc 1131596

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 278     gcggcgcgggcggtg 292
               |||||||||||||||
Sbjct: 1309242 gcggcgcgggcggtg 1309256

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 624     agcgcctggctgctg 638
               |||||||||||||||
Sbjct: 1376313 agcgcctggctgctg 1376327

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 262     ggcgcggatcaacga 276
               |||||||||||||||
Sbjct: 1385712 ggcgcggatcaacga 1385698

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 534     cgaccagtccggcgccctg 552
               ||||||||||| |||||||
Sbjct: 1432599 cgaccagtccgtcgccctg 1432617

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 530     tctgcgaccagtccg 544
               |||||||||||||||
Sbjct: 1609830 tctgcgaccagtccg 1609844

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 535     gaccagtccggcgcc 549
               |||||||||||||||
Sbjct: 1705789 gaccagtccggcgcc 1705775

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 166     ccgcgaagccatggc 180
               |||||||||||||||
Sbjct: 1813880 ccgcgaagccatggc 1813894

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 432     atcgcatccagctcg 446
               |||||||||||||||
Sbjct: 2190452 atcgcatccagctcg 2190438

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 154     gttgggcgacttccg 168
               |||||||||||||||
Sbjct: 2346458 gttgggcgacttccg 2346444

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 248     gaactgctgctgcgg 262
               |||||||||||||||
Sbjct: 2413535 gaactgctgctgcgg 2413521

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 173     gccatggctggcgaa 187
               |||||||||||||||
Sbjct: 2539393 gccatggctggcgaa 2539379

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 248     gaactgctgctgcgg 262
               |||||||||||||||
Sbjct: 2542850 gaactgctgctgcgg 2542864

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 444     tcgcgttcgagcagc 458
               |||||||||||||||
Sbjct: 2600265 tcgcgttcgagcagc 2600251

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 310     cggtgccgatctcga 324
               |||||||||||||||
Sbjct: 2732204 cggtgccgatctcga 2732190

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 248     gaactgctgctgcgg 262
               |||||||||||||||
Sbjct: 2780620 gaactgctgctgcgg 2780634

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 310     cggtgccgatctcga 324
               |||||||||||||||
Sbjct: 2800050 cggtgccgatctcga 2800064

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 278     gcggcgcgggcggtg 292
               |||||||||||||||
Sbjct: 3600116 gcggcgcgggcggtg 3600130

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 632     gctgctgaacgcggt 646
               |||||||||||||||
Sbjct: 3667315 gctgctgaacgcggt 3667329

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 286     ggcggtgatgctggc 300
               |||||||||||||||
Sbjct: 3830078 ggcggtgatgctggc 3830092

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 533     gcgaccagtccggcg 547
               |||||||||||||||
Sbjct: 3986420 gcgaccagtccggcg 3986406

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 286     ggcggtgatgctggc 300
               |||||||||||||||
Sbjct: 4046729 ggcggtgatgctggc 4046743

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 401     gcgcagtacgagagc 415
               |||||||||||||||
Sbjct: 4137131 gcgcagtacgagagc 4137145

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 73      cggcgtgatcatcga 87
               |||||||||||||||
Sbjct: 4633924 cggcgtgatcatcga 4633938

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 76      cgtgatcatcgatctttcc 94
               ||||||| |||||||||||
Sbjct: 4742470 cgtgatcgtcgatctttcc 4742488

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 328     gatcggtgccggctt 342
               |||||||||||||||
Sbjct: 4834026 gatcggtgccggctt 4834012

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 304     cgccagcggtgccga 318
               |||||||||||||||
Sbjct: 5073226 cgccagcggtgccga 5073240

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 537     ccagtccggcgccct 551
               |||||||||||||||
Sbjct: 5119018 ccagtccggcgccct 5119032

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 440     cagctcgcgttcgagcagc 458
               |||||||||||||| ||||
Sbjct: 5127453 cagctcgcgttcgaccagc 5127471

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 172     agccatggctggcga 186
               |||||||||||||||
Sbjct: 5136745 agccatggctggcga 5136731

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 414     gcgacaagtcgctgc 428
               |||||||||||||||
Sbjct: 5519097 gcgacaagtcgctgc 5519083

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 422     tcgctgcgcaatcgc 436
               |||||||||||||||
Sbjct: 5546002 tcgctgcgcaatcgc 5545988

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 322     cgaccagatcggtgccggc 340
               ||||| |||||||||||||
Sbjct: 5559555 cgacctgatcggtgccggc 5559537

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 624     agcgcctggctgctg 638
               |||||||||||||||
Sbjct: 5562432 agcgcctggctgctg 5562446

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 425     ctgcgcaatcgcatc 439
               |||||||||||||||
Sbjct: 5622484 ctgcgcaatcgcatc 5622470

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 377     cccgaggcggtaccg 391
               |||||||||||||||
Sbjct: 5709526 cccgaggcggtaccg 5709512

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 390     cgccggtggaggcgc 404
               |||||||||||||||
Sbjct: 5770514 cgccggtggaggcgc 5770500

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 462     ccgtcgcaggaccgc 476
               |||||||||||||||
Sbjct: 5803951 ccgtcgcaggaccgc 5803965

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 439     ccagctcgcgttcga 453
               |||||||||||||||
Sbjct: 5889039 ccagctcgcgttcga 5889053

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 392     ccggtggaggcgcag 406
               |||||||||||||||
Sbjct: 5932678 ccggtggaggcgcag 5932692

 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 625     gcgcctggctgctga 639
               |||||||||||||||
Sbjct: 6215194 gcgcctggctgctga 6215180
  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6583
Number of Sequences: 1
Number of extensions: 6583
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of query: 928
length of database: 6,534,396
effective HSP length: 16
effective length of query: 912
effective length of database: 6,534,380
effective search space: 5959354560
effective search space used: 5959354560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)