BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (885 letters)

Distribution of 43 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           355   6e-98 



>GCTS_68 
          Length = 6534396

 Score =  355 bits (179), Expect = 6e-98
 Identities = 179/179 (100%)
 Strand = Plus / Minus

                                                                           
Query: 62      tactacacccagcaactgggcctgggcttcgacgagatcagcgccggcaacctgctactg 121
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6045936 tactacacccagcaactgggcctgggcttcgacgagatcagcgccggcaacctgctactg 6045877

                                                                           
Query: 122     gtcgacgaagacctcaacgtcctccacgggcacggcatggcgaatccggccaatcgcttc 181
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6045876 gtcgacgaagacctcaacgtcctccacgggcacggcatggcgaatccggccaatcgcttc 6045817

                                                                          
Query: 182     cacagctgggtctaccgcgcccgcccggacgtcaattgcatcatccatacccacccgct 240
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6045816 cacagctgggtctaccgcgcccgcccggacgtcaattgcatcatccatacccacccgct 6045758






 Score = 77.8 bits (39), Expect = 2e-14
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                   
Query: 270     tacngctgcnngtctcgcacatggacctttgcccgctatacgacgaccgcgc 321
               ||| |||||  |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6045728 taccgctgcaggtctcgcacatggacctttgcccgctatacgacgactgcgc 6045677






 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 219    gcatcatccatacccac 235
              |||||||||||||||||
Sbjct: 209320 gcatcatccatacccac 209336






 Score = 34.2 bits (17), Expect = 0.29
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                    
Query: 315     accgcgcatcatctgcaggcc 335
               |||||||| ||||||||||||
Sbjct: 4473661 accgcgcagcatctgcaggcc 4473681






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 63     actacacccagcaact 78
              ||||||||||||||||
Sbjct: 265287 actacacccagcaact 265302






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                  
Query: 69     cccagcaactgggcctgggc 88
              ||||||||||||||| ||||
Sbjct: 771816 cccagcaactgggccagggc 771835






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 73      gcaactgggcctgggc 88
               ||||||||||||||||
Sbjct: 1091084 gcaactgggcctgggc 1091069






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 73      gcaactgggcctgggc 88
               ||||||||||||||||
Sbjct: 1788942 gcaactgggcctgggc 1788957






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 73      gcaactgggcctgggc 88
               ||||||||||||||||
Sbjct: 1789555 gcaactgggcctgggc 1789570






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 102     gcgccggcaacctgct 117
               ||||||||||||||||
Sbjct: 2095338 gcgccggcaacctgct 2095323






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 95      gagatcagcgccggca 110
               ||||||||||||||||
Sbjct: 2096548 gagatcagcgccggca 2096533






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 112     cctgctactggtcgacgaag 131
               |||||| |||||||||||||
Sbjct: 2790501 cctgctgctggtcgacgaag 2790482






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 88      cttcgacgagatcagc 103
               ||||||||||||||||
Sbjct: 3173365 cttcgacgagatcagc 3173350






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 97      gatcagcgccggcaac 112
               ||||||||||||||||
Sbjct: 3459341 gatcagcgccggcaac 3459356






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 82      cctgggcttcgacgagatca 101
               ||||||||||| ||||||||
Sbjct: 5045266 cctgggcttcggcgagatca 5045247






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 197     cgcgcccgcccggacg 212
               ||||||||||||||||
Sbjct: 5100531 cgcgcccgcccggacg 5100546






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 99      tcagcgccggcaacct 114
               ||||||||||||||||
Sbjct: 5555984 tcagcgccggcaacct 5555999






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 95      gagatcagcgccggca 110
               ||||||||||||||||
Sbjct: 5848690 gagatcagcgccggca 5848705






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 102     gcgccggcaacctgct 117
               ||||||||||||||||
Sbjct: 5849900 gcgccggcaacctgct 5849915






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 187     ctgggtctaccgcgcc 202
               ||||||||||||||||
Sbjct: 5965768 ctgggtctaccgcgcc 5965753






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                            
Query: 103   cgccggcaacctgct 117
             |||||||||||||||
Sbjct: 32072 cgccggcaacctgct 32086






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 100    cagcgccggcaacct 114
              |||||||||||||||
Sbjct: 389326 cagcgccggcaacct 389340






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 121    ggtcgacgaagacct 135
              |||||||||||||||
Sbjct: 498861 ggtcgacgaagacct 498875






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 196    ccgcgcccgcccgga 210
              |||||||||||||||
Sbjct: 547421 ccgcgcccgcccgga 547407






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                     
Query: 94     cgagatcagcgccggcaacctgc 116
              |||| ||||||||||||| ||||
Sbjct: 861536 cgaggtcagcgccggcaagctgc 861558






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 78     tgggcctgggcttcg 92
              |||||||||||||||
Sbjct: 885555 tgggcctgggcttcg 885569






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 103    cgccggcaacctgct 117
              |||||||||||||||
Sbjct: 924146 cgccggcaacctgct 924132






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 103     cgccggcaacctgct 117
               |||||||||||||||
Sbjct: 1504816 cgccggcaacctgct 1504802






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 103     cgccggcaacctgct 117
               |||||||||||||||
Sbjct: 1655145 cgccggcaacctgct 1655159






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 69      cccagcaactgggcc 83
               |||||||||||||||
Sbjct: 1919510 cccagcaactgggcc 1919524






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 118     actggtcgacgaaga 132
               |||||||||||||||
Sbjct: 2428372 actggtcgacgaaga 2428386






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 436     ttgtgctttcttgtg 450
               |||||||||||||||
Sbjct: 2586869 ttgtgctttcttgtg 2586855






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 111     acctgctactggtcgacga 129
               |||||| ||||||||||||
Sbjct: 2811781 acctgcaactggtcgacga 2811763






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 24/27 (88%)
 Strand = Plus / Minus

                                          
Query: 81      gcctgggcttcgacgagatcagcgccg 107
               |||||||| ||| || |||||||||||
Sbjct: 3109333 gcctgggcatcggcgcgatcagcgccg 3109307






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 102     gcgccggcaacctgc 116
               |||||||||||||||
Sbjct: 3610288 gcgccggcaacctgc 3610302






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 111     acctgctactggtcg 125
               |||||||||||||||
Sbjct: 3778878 acctgctactggtcg 3778892






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 80      ggcctgggcttcgac 94
               |||||||||||||||
Sbjct: 3858003 ggcctgggcttcgac 3857989






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 196     ccgcgcccgcccgga 210
               |||||||||||||||
Sbjct: 3919874 ccgcgcccgcccgga 3919888






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 79      gggcctgggcttcga 93
               |||||||||||||||
Sbjct: 4713233 gggcctgggcttcga 4713219






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 82      cctgggcttcgacga 96
               |||||||||||||||
Sbjct: 4836216 cctgggcttcgacga 4836202






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 631     ggggttatcgcggtg 645
               |||||||||||||||
Sbjct: 4957122 ggggttatcgcggtg 4957108






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 99      tcagcgccggcaacctgct 117
               ||||||||||| |||||||
Sbjct: 4972427 tcagcgccggcgacctgct 4972445






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 81      gcctgggcttcgacg 95
               |||||||||||||||
Sbjct: 5326754 gcctgggcttcgacg 5326740






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4127
Number of Sequences: 1
Number of extensions: 4127
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of query: 885
length of database: 6,534,396
effective HSP length: 16
effective length of query: 869
effective length of database: 6,534,380
effective search space: 5678376220
effective search space used: 5678376220
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)