BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (848 letters)

Distribution of 29 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           232   6e-61 



>GCTS_68 
          Length = 6534396

 Score =  232 bits (117), Expect = 6e-61
 Identities = 123/125 (98%)
 Strand = Plus / Minus

                                                                           
Query: 61      tattcgatccagcgcagcgtcgacgacgcgctcaacagcccgcaaccggacacccgggtc 120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6365704 tattcgatccagcgcagcgtcgacgacgcgctcaacagcccgcaaccggacacccgggtc 6365645

                                                                           
Query: 121     gacggcaccctgaaggtcgccgccagctataccgtgatgggctatttcctcccccatcat 180
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 6365644 gacggcaccctgaaggtcgccgccagctataccgtgatgggctatttcctcccccaccac 6365585

                    
Query: 181     ctgca 185
               |||||
Sbjct: 6365584 ctgca 6365580






 Score = 38.2 bits (19), Expect = 0.018
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 111     cacccgggtcgacggcacc 129
               |||||||||||||||||||
Sbjct: 5972705 cacccgggtcgacggcacc 5972687






 Score = 36.2 bits (18), Expect = 0.070
 Identities = 30/34 (88%)
 Strand = Plus / Minus

                                                 
Query: 274     tacgacatctgcgcgctgctcaccggaaatctca 307
               |||||||||  || |||||||||||| |||||||
Sbjct: 6365491 tacgacatcgccgtgctgctcaccggcaatctca 6365458






 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 281     tctgcgcgctgctcacc 297
               |||||||||||||||||
Sbjct: 1511680 tctgcgcgctgctcacc 1511664






 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 120     cgacggcaccctgaagg 136
               |||||||||||||||||
Sbjct: 5015079 cgacggcaccctgaagg 5015063






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 134     aggtcgccgccagcta 149
               ||||||||||||||||
Sbjct: 2158953 aggtcgccgccagcta 2158968






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 109     gacacccgggtcgacg 124
               ||||||||||||||||
Sbjct: 3229985 gacacccgggtcgacg 3229970






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 111     cacccgggtcgacggc 126
               ||||||||||||||||
Sbjct: 5194512 cacccgggtcgacggc 5194497






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 108     ggacacccgggtcgac 123
               ||||||||||||||||
Sbjct: 5328860 ggacacccgggtcgac 5328875






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 284     gcgcgctgctcaccgg 299
               ||||||||||||||||
Sbjct: 5488257 gcgcgctgctcaccgg 5488242






 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 124    ggcaccctgaaggtc 138
              |||||||||||||||
Sbjct: 140431 ggcaccctgaaggtc 140417






 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 140    ccgccagctataccg 154
              |||||||||||||||
Sbjct: 334379 ccgccagctataccg 334365






 Score = 30.2 bits (15), Expect = 4.3
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                 
Query: 392    ggccgagctgtggccggag 410
              |||||||||||||| ||||
Sbjct: 345550 ggccgagctgtggcaggag 345532






 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 173    cccatcatctgcagg 187
              |||||||||||||||
Sbjct: 988623 cccatcatctgcagg 988609






 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 76      agcgtcgacgacgcg 90
               |||||||||||||||
Sbjct: 1103185 agcgtcgacgacgcg 1103199






 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 284     gcgcgctgctcaccg 298
               |||||||||||||||
Sbjct: 1152375 gcgcgctgctcaccg 1152389






 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 127     accctgaaggtcgcc 141
               |||||||||||||||
Sbjct: 1160185 accctgaaggtcgcc 1160171






 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 65      cgatccagcgcagcg 79
               |||||||||||||||
Sbjct: 1637654 cgatccagcgcagcg 1637640






 Score = 30.2 bits (15), Expect = 4.3
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 281     tctgcgcgctgctcaccgg 299
               |||||||||||||| ||||
Sbjct: 3049304 tctgcgcgctgctcgccgg 3049286






 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 128     ccctgaaggtcgccg 142
               |||||||||||||||
Sbjct: 3408832 ccctgaaggtcgccg 3408846






 Score = 30.2 bits (15), Expect = 4.3
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 132     gaaggtcgccgccagctataccg 154
               |||| ||| ||||||||||||||
Sbjct: 3450294 gaagctcggcgccagctataccg 3450316






 Score = 30.2 bits (15), Expect = 4.3
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 67      atccagcgcagcgtcgacg 85
               |||||||||||| ||||||
Sbjct: 4152839 atccagcgcagcctcgacg 4152821






 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 113     cccgggtcgacggca 127
               |||||||||||||||
Sbjct: 4176405 cccgggtcgacggca 4176419






 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 74      gcagcgtcgacgacg 88
               |||||||||||||||
Sbjct: 4393120 gcagcgtcgacgacg 4393134






 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 349     tgacttttggagggg 363
               |||||||||||||||
Sbjct: 5356467 tgacttttggagggg 5356453






 Score = 30.2 bits (15), Expect = 4.3
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 119     tcgacggcaccctgaaggtcgcc 141
               |||||||||||| ||| ||||||
Sbjct: 5497490 tcgacggcacccagaacgtcgcc 5497512






 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 67      atccagcgcagcgtc 81
               |||||||||||||||
Sbjct: 5595557 atccagcgcagcgtc 5595571






 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 285     cgcgctgctcaccgg 299
               |||||||||||||||
Sbjct: 6052154 cgcgctgctcaccgg 6052140






 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 64      tcgatccagcgcagc 78
               |||||||||||||||
Sbjct: 6319890 tcgatccagcgcagc 6319876






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3385
Number of Sequences: 1
Number of extensions: 3385
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of query: 848
length of database: 6,534,396
effective HSP length: 16
effective length of query: 832
effective length of database: 6,534,380
effective search space: 5436604160
effective search space used: 5436604160
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)