BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (977 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                            98   3e-20 

>GCTS_68 
          Length = 6534396

 Score = 97.6 bits (49), Expect = 3e-20
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                                
Query: 101     gacctcgacgctgagatagggcgtgtccagctgctggcggatactgcgg 149
               |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6243055 gacctcgacgctgagatagggcgtgtccagctgctggcggatactgcgg 6243103




 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 103     cctcgacgctgagatag 119
               |||||||||||||||||
Sbjct: 2219761 cctcgacgctgagatag 2219745




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 126     tccagctgctggcgga 141
               ||||||||||||||||
Sbjct: 2710880 tccagctgctggcgga 2710865




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 75      ccgcgcatcatctgcaggcc 94
               ||||||| ||||||||||||
Sbjct: 4473662 ccgcgcagcatctgcaggcc 4473681




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 88      gcaggcctggccagac 103
               ||||||||||||||||
Sbjct: 4545339 gcaggcctggccagac 4545324




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 435     aaaagaacaaaaaaaa 450
               ||||||||||||||||
Sbjct: 4685072 aaaagaacaaaaaaaa 4685087




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 450     aaaaaaaaagaagaaaaaa 468
               ||||||| |||||||||||
Sbjct: 2922977 aaaaaaacagaagaaaaaa 2922995




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 126     tccagctgctggcgg 140
               |||||||||||||||
Sbjct: 4435755 tccagctgctggcgg 4435769




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1758
Number of Sequences: 1
Number of extensions: 1758
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 977
length of database: 6,534,396
effective HSP length: 16
effective length of query: 961
effective length of database: 6,534,380
effective search space: 6279539180
effective search space used: 6279539180
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)