BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (906 letters)

Distribution of 69 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           914   0.0   

>GCTS_68 
          Length = 6534396

 Score =  914 bits (461), Expect = 0.0
 Identities = 575/605 (95%), Gaps = 6/605 (0%)
 Strand = Plus / Minus

                                                                           
Query: 60      tacaaccacaagcaggtcagcttcgacagcaccggcccgctcgacgacgagggacgcttt 119
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6345765 tacaaccacaagcaggtcagcttcgacagcaccggcccgctcgacgacgagggacgcttt 6345706

                                                                           
Query: 120     ctctatcgcatctccggcgtggtgcgcgacagcaacacccaggtcgaccatatcgacgac 179
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6345705 ctctatcgcatctccggcgtggtgcgcgacagcaacacccaggtcgaccatatcgacgac 6345646

                                                                           
Query: 180     aagcgctacaacatcgccccgagcctgacctggaacatcgacgacgacaccaggctgacc 239
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6345645 aagcgctacaacatcgccccgagcctgacctggaacatcgacgacgacaccaggctgacc 6345586

                                                                           
Query: 240     ttcctcggccagttcaaccgcgacgataccggcatcacccgtcatctgctggcgtggcca 299
               ||||||||||||||||||||||||||||||||||||||| | ||  | ||| ||  ||  
Sbjct: 6345585 ttcctcggccagttcaaccgcgacgataccggcatcaccagccagttcctgccgctgcgc 6345526

                                                                           
Query: 300     ggaaccaagtacgacgcgccgttcggcaaggtttcccaccacaagaacctcggcgacccg 359
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6345525 ggaaccaagtacgacgcgccgttcggcaaggtttcccaccacaagaacctcggcgacccg 6345466

                                                                           
Query: 360     gactgggaatactacgaccgcacctccta-tggaggggtgtacaccttcgagcggcggat 418
               ||||||||||||||||||||||||| ||| |||  |||  ||| ||||||||||||||||
Sbjct: 6345465 gactgggaatactacgaccgcacctactactggctggg-ctacgccttcgagcggcggat 6345407

                                                                           
Query: 419     caacgatgtctggcagttccgccagaacctgcgttacctgcgcaacgacctgtcgttcca 478
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6345406 caacgatgtctggcagttccgccagaacctgcgttacctgcgcaacgacctgtcgttcca 6345347

                                                                           
Query: 479     ggcggttacagcgggcacagttcatgccgacggtacactgtaacgcagcaccacctcggt 538
               |||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||
Sbjct: 6345346 ggcggttacagcgggcacagctcatgccgacggcacactggaacgcagcaccacctcggt 6345287

                                                                           
Query: 539     ggatgactacgtcagtcagttcgtagtagataacaacttccaggccgactttccaaacag 598
               ||||||  ||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 6345286 ggatgaagacgtcagtcagttcgtagtagataacaacttccaggccgac-ttcgaaacag 6345228

                                                                           
Query: 599     gcgccctgcgccacaccctgctgttaggccttggat-acaacccgctccgataatcaata 657
               ||||||||||||||||||||||| |||||| ||||| |||| |||| |||| ||||||||
Sbjct: 6345227 gcgccctgcgccacaccctgctgctaggcc-tggatcacaa-ccgcaccgacaatcaata 6345170

                    
Query: 658     cacat 662
               |||||
Sbjct: 6345169 cacat 6345165




 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 335     ccaccacaagaacctcggcg 354
               ||||||||||||||||||||
Sbjct: 6516124 ccaccacaagaacctcggcg 6516143




 Score = 36.2 bits (18), Expect = 0.075
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 522     cgcagcaccacctcggtg 539
               ||||||||||||||||||
Sbjct: 1611000 cgcagcaccacctcggtg 1610983




 Score = 36.2 bits (18), Expect = 0.075
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 233     gctgaccttcctcggcca 250
               ||||||||||||||||||
Sbjct: 3004834 gctgaccttcctcggcca 3004817




 Score = 36.2 bits (18), Expect = 0.075
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 237     accttcctcggccagttc 254
               ||||||||||||||||||
Sbjct: 3801514 accttcctcggccagttc 3801497




 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 454     acctgcgcaacgacctg 470
               |||||||||||||||||
Sbjct: 1054829 acctgcgcaacgacctg 1054813




 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 238     ccttcctcggccagttc 254
               |||||||||||||||||
Sbjct: 1125871 ccttcctcggccagttc 1125855




 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 127     gcatctccggcgtggtg 143
               |||||||||||||||||
Sbjct: 4897377 gcatctccggcgtggtg 4897393




 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 64      accacaagcaggtcagc 80
               |||||||||||||||||
Sbjct: 6246600 accacaagcaggtcagc 6246584




 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 248     ccagttcaaccgcgacg 264
               |||||||||||||||||
Sbjct: 6417881 ccagttcaaccgcgacg 6417897




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 335    ccaccacaagaacctc 350
              ||||||||||||||||
Sbjct: 177659 ccaccacaagaacctc 177674




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                  
Query: 134    cggcgtggtgcgcgacagca 153
              |||||||||||||| |||||
Sbjct: 264201 cggcgtggtgcgcgccagca 264182




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 469     tgtcgttccaggcggt 484
               ||||||||||||||||
Sbjct: 1444821 tgtcgttccaggcggt 1444836




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 468     ctgtcgttccaggcgg 483
               ||||||||||||||||
Sbjct: 1518200 ctgtcgttccaggcgg 1518215




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                       
Query: 88      gcaccggcccgctcgacgacgagg 111
               |||||||||||  |||||||||||
Sbjct: 1802625 gcaccggcccgtccgacgacgagg 1802648




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 422     cgatgtctggcagttccgcc 441
               ||||| ||||||||||||||
Sbjct: 1991856 cgatgcctggcagttccgcc 1991875




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 600     cgccctgcgccacacc 615
               ||||||||||||||||
Sbjct: 2126016 cgccctgcgccacacc 2126031




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 239     cttcctcggccagttc 254
               ||||||||||||||||
Sbjct: 2346823 cttcctcggccagttc 2346838




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 236     gaccttcctcggccag 251
               ||||||||||||||||
Sbjct: 3447324 gaccttcctcggccag 3447339




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 554     tcagttcgtagtagat 569
               ||||||||||||||||
Sbjct: 3734235 tcagttcgtagtagat 3734250




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 188     caacatcgccccgagcctga 207
               |||| |||||||||||||||
Sbjct: 3749776 caacctcgccccgagcctga 3749795




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 68      caagcaggtcagcttcgaca 87
               ||||| ||||||||||||||
Sbjct: 4672964 caagccggtcagcttcgaca 4672983




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 95      cccgctcgacgacgag 110
               ||||||||||||||||
Sbjct: 4896126 cccgctcgacgacgag 4896141




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 179     caagcgctacaacatc 194
               ||||||||||||||||
Sbjct: 5160527 caagcgctacaacatc 5160512




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 348     ctcggcgacccggact 363
               ||||||||||||||||
Sbjct: 6221229 ctcggcgacccggact 6221214




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 233     gctgaccttcctcggc 248
               ||||||||||||||||
Sbjct: 6256309 gctgaccttcctcggc 6256324




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 317  gccgttcggcaaggt 331
            |||||||||||||||
Sbjct: 2383 gccgttcggcaaggt 2397




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 82     tcgacagcaccggcc 96
              |||||||||||||||
Sbjct: 505357 tcgacagcaccggcc 505371




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 240    ttcctcggccagttc 254
              |||||||||||||||
Sbjct: 607508 ttcctcggccagttc 607522




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 227    caccaggctgacctt 241
              |||||||||||||||
Sbjct: 771302 caccaggctgacctt 771316




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 520    aacgcagcaccacct 534
              |||||||||||||||
Sbjct: 959452 aacgcagcaccacct 959438




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 409    agcggcggatcaacg 423
              |||||||||||||||
Sbjct: 993568 agcggcggatcaacg 993554




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 258     cgcgacgataccggc 272
               |||||||||||||||
Sbjct: 1080530 cgcgacgataccggc 1080516




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 21/23 (91%)
 Strand = Plus / Minus

                                      
Query: 257     ccgcgacgataccggcatcaccc 279
               ||||||| || ||||||||||||
Sbjct: 1202397 ccgcgactatcccggcatcaccc 1202375




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 766     cgccgctctggctgg 780
               |||||||||||||||
Sbjct: 1226094 cgccgctctggctgg 1226108




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 353     cgacccggactggga 367
               |||||||||||||||
Sbjct: 1234454 cgacccggactggga 1234468




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 522     cgcagcaccacctcg 536
               |||||||||||||||
Sbjct: 1310049 cgcagcaccacctcg 1310035




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 156     acccaggtcgaccat 170
               |||||||||||||||
Sbjct: 1436649 acccaggtcgaccat 1436663




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 215     catcgacgacgacac 229
               |||||||||||||||
Sbjct: 1447482 catcgacgacgacac 1447496




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 138     gtggtgcgcgacagc 152
               |||||||||||||||
Sbjct: 1941351 gtggtgcgcgacagc 1941337




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 263     cgataccggcatcac 277
               |||||||||||||||
Sbjct: 2103089 cgataccggcatcac 2103075




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 370     actacgaccgcacct 384
               |||||||||||||||
Sbjct: 2108426 actacgaccgcacct 2108412




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 606     gcgccacaccctgct 620
               |||||||||||||||
Sbjct: 2110327 gcgccacaccctgct 2110313




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 134     cggcgtggtgcgcga 148
               |||||||||||||||
Sbjct: 2158241 cggcgtggtgcgcga 2158255




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 216     atcgacgacgacacc 230
               |||||||||||||||
Sbjct: 2358196 atcgacgacgacacc 2358210




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 132     tccggcgtggtgcgc 146
               |||||||||||||||
Sbjct: 2374397 tccggcgtggtgcgc 2374383




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 236     gaccttcctcggcca 250
               |||||||||||||||
Sbjct: 2666069 gaccttcctcggcca 2666055




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 256     accgcgacgataccg 270
               |||||||||||||||
Sbjct: 2678294 accgcgacgataccg 2678308




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 314     cgcgccgttcggcaa 328
               |||||||||||||||
Sbjct: 3057898 cgcgccgttcggcaa 3057912




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 217     tcgacgacgacacca 231
               |||||||||||||||
Sbjct: 3262886 tcgacgacgacacca 3262872




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 95      cccgctcgacgacga 109
               |||||||||||||||
Sbjct: 3303638 cccgctcgacgacga 3303624




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 577     tccaggccgactttc 591
               |||||||||||||||
Sbjct: 3346521 tccaggccgactttc 3346507




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 209     ctggaacatcgacga 223
               |||||||||||||||
Sbjct: 3365201 ctggaacatcgacga 3365215




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 243     ctcggccagttcaac 257
               |||||||||||||||
Sbjct: 3461595 ctcggccagttcaac 3461609




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 138     gtggtgcgcgacagc 152
               |||||||||||||||
Sbjct: 3529515 gtggtgcgcgacagc 3529501




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 174     gacgacaagcgctac 188
               |||||||||||||||
Sbjct: 3886485 gacgacaagcgctac 3886499




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 767     gccgctctggctggt 781
               |||||||||||||||
Sbjct: 4283495 gccgctctggctggt 4283509




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 95      cccgctcgacgacga 109
               |||||||||||||||
Sbjct: 4298772 cccgctcgacgacga 4298786




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 315     gcgccgttcggcaag 329
               |||||||||||||||
Sbjct: 4433458 gcgccgttcggcaag 4433444




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 571     acaacttccaggccg 585
               |||||||||||||||
Sbjct: 4454836 acaacttccaggccg 4454822




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 760     tgttgtcgccgctctggct 778
               ||||| |||||||||||||
Sbjct: 4511887 tgttggcgccgctctggct 4511869




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 455     cctgcgcaacgacct 469
               |||||||||||||||
Sbjct: 4526984 cctgcgcaacgacct 4526998




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 663     tcatctcagggcctg 677
               |||||||||||||||
Sbjct: 4645922 tcatctcagggcctg 4645936




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 345     aacctcggcgacccg 359
               |||||||||||||||
Sbjct: 4668543 aacctcggcgacccg 4668557




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 605     tgcgccacaccctgc 619
               |||||||||||||||
Sbjct: 5119858 tgcgccacaccctgc 5119872




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 741     gctttttgttttatc 755
               |||||||||||||||
Sbjct: 5345934 gctttttgttttatc 5345948




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 134     cggcgtggtgcgcga 148
               |||||||||||||||
Sbjct: 5423510 cggcgtggtgcgcga 5423496




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 454     acctgcgcaacgacc 468
               |||||||||||||||
Sbjct: 5834644 acctgcgcaacgacc 5834630




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 353     cgacccggactggga 367
               |||||||||||||||
Sbjct: 5902458 cgacccggactggga 5902444




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7297
Number of Sequences: 1
Number of extensions: 7297
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of query: 906
length of database: 6,534,396
effective HSP length: 16
effective length of query: 890
effective length of database: 6,534,380
effective search space: 5815598200
effective search space used: 5815598200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)