BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (984 letters)

Distribution of 54 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           391   e-108 



>GCTS_68 
          Length = 6534396

 Score =  391 bits (197), Expect = e-108
 Identities = 203/205 (99%)
 Strand = Plus / Minus

                                                                           
Query: 55      cctgttacagcctggacttctgctacttcggcgagaagcgcaacgtcaccgcgacggtga 114
               |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2109389 cctgctacagcctggacttctgctacttcggcgagaagcgcaacgtcaccgcgacggtga 2109330

                                                                           
Query: 115     actaccagttctgaccgtccacccgggccccggcgccagcgccgcggtaccggccaagca 174
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2109329 actaccagttctgaccgtccacccgggccccggcgccagcgccgcggtaccggccaagca 2109270

                                                                           
Query: 175     gcccggcgcgcaacgtacgcgccgggcattcgccggcgtcgccggccgtaccctggttac 234
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2109269 gcccggcgcgcaacgtacgcgccgggcattcgccggcgtcgccggccgtaccctggttac 2109210

                                        
Query: 235     ctggagcccccatacgccccgtcct 259
               ||||||||||||| |||||||||||
Sbjct: 2109209 ctggagcccccatgcgccccgtcct 2109185






 Score = 36.2 bits (18), Expect = 0.081
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 204     tcgccggcgtcgccggcc 221
               ||||||||||||||||||
Sbjct: 2605390 tcgccggcgtcgccggcc 2605373






 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 204     tcgccggcgtcgccggc 220
               |||||||||||||||||
Sbjct: 1854719 tcgccggcgtcgccggc 1854735






 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 141     gccccggcgccagcgcc 157
               |||||||||||||||||
Sbjct: 4164368 gccccggcgccagcgcc 4164384






 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 205     cgccggcgtcgccggcc 221
               |||||||||||||||||
Sbjct: 6022690 cgccggcgtcgccggcc 6022706






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 206    gccggcgtcgccggcc 221
              ||||||||||||||||
Sbjct: 734012 gccggcgtcgccggcc 734027






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 144    ccggcgccagcgccgc 159
              ||||||||||||||||
Sbjct: 770750 ccggcgccagcgccgc 770735






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 135     acccgggccccggcgc 150
               ||||||||||||||||
Sbjct: 1414132 acccgggccccggcgc 1414147






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 145     cggcgccagcgccgcg 160
               ||||||||||||||||
Sbjct: 1520131 cggcgccagcgccgcg 1520146






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 195     gccgggcattcgccgg 210
               ||||||||||||||||
Sbjct: 1711843 gccgggcattcgccgg 1711828






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 203     ttcgccggcgtcgccg 218
               ||||||||||||||||
Sbjct: 1868274 ttcgccggcgtcgccg 1868289






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 83      cggcgagaagcgcaac 98
               ||||||||||||||||
Sbjct: 2523615 cggcgagaagcgcaac 2523630






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 206     gccggcgtcgccggcc 221
               ||||||||||||||||
Sbjct: 3455876 gccggcgtcgccggcc 3455861






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 206     gccggcgtcgccggcc 221
               ||||||||||||||||
Sbjct: 3675234 gccggcgtcgccggcc 3675249






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 145     cggcgccagcgccgcg 160
               ||||||||||||||||
Sbjct: 3715245 cggcgccagcgccgcg 3715260






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 203     ttcgccggcgtcgccg 218
               ||||||||||||||||
Sbjct: 3906513 ttcgccggcgtcgccg 3906528






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 202     attcgccggcgtcgcc 217
               ||||||||||||||||
Sbjct: 4837277 attcgccggcgtcgcc 4837292






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                            
Query: 204   tcgccggcgtcgccg 218
             |||||||||||||||
Sbjct: 44531 tcgccggcgtcgccg 44517






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 145    cggcgccagcgccgc 159
              |||||||||||||||
Sbjct: 621589 cggcgccagcgccgc 621603






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                 
Query: 141    gccccggcgccagcgccgc 159
              ||||| |||||||||||||
Sbjct: 693723 gccccagcgccagcgccgc 693705






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                 
Query: 140    ggccccggcgccagcgccg 158
              |||| ||||||||||||||
Sbjct: 785529 ggcctcggcgccagcgccg 785511






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                 
Query: 203    ttcgccggcgtcgccggcc 221
              |||| ||||||||||||||
Sbjct: 832972 ttcgtcggcgtcgccggcc 832990






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                 
Query: 141    gccccggcgccagcgccgc 159
              ||||| |||||||||||||
Sbjct: 889299 gccccagcgccagcgccgc 889281






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 145    cggcgccagcgccgc 159
              |||||||||||||||
Sbjct: 931995 cggcgccagcgccgc 931981






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 204    tcgccggcgtcgccg 218
              |||||||||||||||
Sbjct: 951212 tcgccggcgtcgccg 951226






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 203     ttcgccggcgtcgcc 217
               |||||||||||||||
Sbjct: 1315649 ttcgccggcgtcgcc 1315635






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 140     ggccccggcgccagc 154
               |||||||||||||||
Sbjct: 1394772 ggccccggcgccagc 1394758






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 206     gccggcgtcgccggc 220
               |||||||||||||||
Sbjct: 2037431 gccggcgtcgccggc 2037417






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 109     cggtgaactaccagt 123
               |||||||||||||||
Sbjct: 2188840 cggtgaactaccagt 2188826






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 113     gaactaccagttctg 127
               |||||||||||||||
Sbjct: 2306473 gaactaccagttctg 2306487






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 204     tcgccggcgtcgccg 218
               |||||||||||||||
Sbjct: 2363060 tcgccggcgtcgccg 2363074






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 206     gccggcgtcgccggc 220
               |||||||||||||||
Sbjct: 2377205 gccggcgtcgccggc 2377191






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 99      gtcaccgcgacggtg 113
               |||||||||||||||
Sbjct: 2497997 gtcaccgcgacggtg 2498011






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 204     tcgccggcgtcgccg 218
               |||||||||||||||
Sbjct: 2595329 tcgccggcgtcgccg 2595343






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 147     gcgccagcgccgcgg 161
               |||||||||||||||
Sbjct: 2770433 gcgccagcgccgcgg 2770447






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 103     ccgcgacggtgaact 117
               |||||||||||||||
Sbjct: 2993346 ccgcgacggtgaact 2993332






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 143     cccggcgccagcgccgcgg 161
               ||||||||||||| |||||
Sbjct: 3001129 cccggcgccagcgacgcgg 3001147






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 145     cggcgccagcgccgc 159
               |||||||||||||||
Sbjct: 3162303 cggcgccagcgccgc 3162289






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 207     ccggcgtcgccggcc 221
               |||||||||||||||
Sbjct: 3487482 ccggcgtcgccggcc 3487468






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 143     cccggcgccagcgcc 157
               |||||||||||||||
Sbjct: 3747561 cccggcgccagcgcc 3747547






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 141     gccccggcgccagcgccgc 159
               ||||||||||| |||||||
Sbjct: 3786460 gccccggcgcctgcgccgc 3786478






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 208     cggcgtcgccggccg 222
               |||||||||||||||
Sbjct: 3864806 cggcgtcgccggccg 3864792






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 147     gcgccagcgccgcgg 161
               |||||||||||||||
Sbjct: 4003974 gcgccagcgccgcgg 4003960






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 206     gccggcgtcgccggc 220
               |||||||||||||||
Sbjct: 4106556 gccggcgtcgccggc 4106570






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 140     ggccccggcgccagc 154
               |||||||||||||||
Sbjct: 4143401 ggccccggcgccagc 4143387






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 155     gccgcggtaccggcc 169
               |||||||||||||||
Sbjct: 4923684 gccgcggtaccggcc 4923670






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 147     gcgccagcgccgcgg 161
               |||||||||||||||
Sbjct: 5141812 gcgccagcgccgcgg 5141798






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 216     ccggccgtaccctgg 230
               |||||||||||||||
Sbjct: 5226733 ccggccgtaccctgg 5226747






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 230     gttacctggagcccc 244
               |||||||||||||||
Sbjct: 5540973 gttacctggagcccc 5540987






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 144     ccggcgccagcgccg 158
               |||||||||||||||
Sbjct: 5557986 ccggcgccagcgccg 5558000






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 193     gcgccgggcattcgc 207
               |||||||||||||||
Sbjct: 5589979 gcgccgggcattcgc 5589993






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 148     cgccagcgccgcggt 162
               |||||||||||||||
Sbjct: 5693774 cgccagcgccgcggt 5693760






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 76      gctacttcggcgaga 90
               |||||||||||||||
Sbjct: 6232775 gctacttcggcgaga 6232761






 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 145     cggcgccagcgccgc 159
               |||||||||||||||
Sbjct: 6438409 cggcgccagcgccgc 6438395






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4409
Number of Sequences: 1
Number of extensions: 4409
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of query: 984
length of database: 6,534,396
effective HSP length: 17
effective length of query: 967
effective length of database: 6,534,379
effective search space: 6318744493
effective search space used: 6318744493
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)