BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (878 letters)

Distribution of 73 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           222   6e-58 

>GCTS_68 
          Length = 6534396

 Score =  222 bits (112), Expect = 6e-58
 Identities = 164/180 (91%), Gaps = 1/180 (0%)
 Strand = Plus / Plus

                                                                           
Query: 224     gaggggaagtctatgtgcgtcaggccgggcttgggcgtttccggctgggcggtcttggcc 283
               ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6231214 gaggggaagtcgatgtgcgtcaggccgggcttgggcgtttccggctgggcggtcttggcc 6231273

                                                                           
Query: 284     agcgcctggtcctggggcaccgccttgaagacttccgcggagatcgcttcggtctcctgc 343
               |||||| || ||||||||| ||||||| |||||||||||| ||||||||||| |||||||
Sbjct: 6231274 agcgccgggccctggggcagcgccttggagacttccgcggcgatcgcttcggcctcctgc 6231333

                                                                           
Query: 344     ctcttagatgtctccgatcagcgtgatgaccacgttgccggcggtgtatgctttcttgtg 403
               | |  ||| ||| |||| ||||| |||||||||||||||||||| ||| |||||||||||
Sbjct: 6231334 cgc-gagaggtcgccgaccagcgcgatgaccacgttgccggcggcgtaggctttcttgtg 6231392




 Score =  180 bits (91), Expect = 2e-45
 Identities = 109/115 (94%)
 Strand = Plus / Plus

                                                                           
Query: 87      gcttttctcgcacctggtctgtcaggcgggccacgaagccgccgccgccgaggatctggt 146
               |||||||||||||||||||  |||||||||   |||||||||||||||||||||||||||
Sbjct: 6231077 gcttttctcgcacctggtccatcaggcgggtgccgaagccgccgccgccgaggatctggt 6231136

                                                                      
Query: 147     tgcccaggtagagcgccgcgtagtcgggatcctggcggtcgataccaagctgggc 201
               ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 6231137 tgcccaggtagagcgccgcgtagtcgggatcctggcggtcgatgccaagctgggc 6231191




 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 278     ttggccagcgcctggtcctgg 298
               |||||||||||||||||||||
Sbjct: 1865972 ttggccagcgcctggtcctgg 1865992




 Score = 38.2 bits (19), Expect = 0.018
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 119     acgaagccgccgccgccga 137
               |||||||||||||||||||
Sbjct: 4257239 acgaagccgccgccgccga 4257257




 Score = 36.2 bits (18), Expect = 0.073
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 122     aagccgccgccgccgagg 139
               ||||||||||||||||||
Sbjct: 2402870 aagccgccgccgccgagg 2402887




 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 121    gaagccgccgccgccga 137
              |||||||||||||||||
Sbjct: 772418 gaagccgccgccgccga 772434




 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 847     cgccgtcagcgcgcccg 863
               |||||||||||||||||
Sbjct: 3969751 cgccgtcagcgcgcccg 3969767




 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 283     cagcgcctggtcctggg 299
               |||||||||||||||||
Sbjct: 4885245 cagcgcctggtcctggg 4885261




 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 117     ccacgaagccgccgccg 133
               |||||||||||||||||
Sbjct: 5593937 ccacgaagccgccgccg 5593921




 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 121     gaagccgccgccgccga 137
               |||||||||||||||||
Sbjct: 6025831 gaagccgccgccgccga 6025847




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 117    ccacgaagccgccgcc 132
              ||||||||||||||||
Sbjct: 162890 ccacgaagccgccgcc 162905




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 357    ccgatcagcgtgatga 372
              ||||||||||||||||
Sbjct: 196530 ccgatcagcgtgatga 196545




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 130     gccgccgaggatctgg 145
               ||||||||||||||||
Sbjct: 1525031 gccgccgaggatctgg 1525046




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 370     tgaccacgttgccggcggtg 389
               |||||| |||||||||||||
Sbjct: 2135898 tgaccaggttgccggcggtg 2135879




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 124     gccgccgccgccgagg 139
               ||||||||||||||||
Sbjct: 2604291 gccgccgccgccgagg 2604306




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 124     gccgccgccgccgagg 139
               ||||||||||||||||
Sbjct: 2624091 gccgccgccgccgagg 2624076




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 276     tcttggccagcgcctg 291
               ||||||||||||||||
Sbjct: 2724462 tcttggccagcgcctg 2724477




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 277     cttggccagcgcctgg 292
               ||||||||||||||||
Sbjct: 2955271 cttggccagcgcctgg 2955256




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 127     gccgccgccgaggatc 142
               ||||||||||||||||
Sbjct: 3289516 gccgccgccgaggatc 3289501




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 289     ctggtcctggggcacc 304
               ||||||||||||||||
Sbjct: 4484558 ctggtcctggggcacc 4484543




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 130     gccgccgaggatctgg 145
               ||||||||||||||||
Sbjct: 5181929 gccgccgaggatctgg 5181914




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 283     cagcgcctggtcctgg 298
               ||||||||||||||||
Sbjct: 6133919 cagcgcctggtcctgg 6133934




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                
Query: 127   gccgccgccgaggatctgg 145
             ||||||||||||| |||||
Sbjct: 42611 gccgccgccgagggtctgg 42593




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 281    gccagcgcctggtcc 295
              |||||||||||||||
Sbjct: 149779 gccagcgcctggtcc 149793




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 450    ttcccgtctctggcg 464
              |||||||||||||||
Sbjct: 340826 ttcccgtctctggcg 340840




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 29     ctgctggcgtaccgg 43
              |||||||||||||||
Sbjct: 529256 ctgctggcgtaccgg 529242




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 119    acgaagccgccgccg 133
              |||||||||||||||
Sbjct: 622792 acgaagccgccgccg 622806




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 158    agcgccgcgtagtcg 172
              |||||||||||||||
Sbjct: 632103 agcgccgcgtagtcg 632117




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 278    ttggccagcgcctgg 292
              |||||||||||||||
Sbjct: 741267 ttggccagcgcctgg 741253




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 280     ggccagcgcctggtc 294
               |||||||||||||||
Sbjct: 1123669 ggccagcgcctggtc 1123683




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 123     agccgccgccgccga 137
               |||||||||||||||
Sbjct: 1169457 agccgccgccgccga 1169443




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 182     cggtcgataccaagc 196
               |||||||||||||||
Sbjct: 1224283 cggtcgataccaagc 1224297




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 130     gccgccgaggatctggttg 148
               |||| ||||||||||||||
Sbjct: 1311701 gccggcgaggatctggttg 1311683




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 132     cgccgaggatctggttgcc 150
               ||||||||||| |||||||
Sbjct: 1620018 cgccgaggatcaggttgcc 1620000




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 377     gttgccggcggtgta 391
               |||||||||||||||
Sbjct: 1655154 gttgccggcggtgta 1655140




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 281     gccagcgcctggtcc 295
               |||||||||||||||
Sbjct: 1790508 gccagcgcctggtcc 1790522




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 125     ccgccgccgccgagg 139
               |||||||||||||||
Sbjct: 2067335 ccgccgccgccgagg 2067321




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 316     ttccgcggagatcgc 330
               |||||||||||||||
Sbjct: 2135735 ttccgcggagatcgc 2135721




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 358     cgatcagcgtgatga 372
               |||||||||||||||
Sbjct: 2271660 cgatcagcgtgatga 2271646




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 253     cttgggcgtttccgg 267
               |||||||||||||||
Sbjct: 2306666 cttgggcgtttccgg 2306652




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 856     cgcgcccggtgtgcg 870
               |||||||||||||||
Sbjct: 2376723 cgcgcccggtgtgcg 2376709




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 517     ttgtcgaggtcttgc 531
               |||||||||||||||
Sbjct: 2761930 ttgtcgaggtcttgc 2761916




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 280     ggccagcgcctggtc 294
               |||||||||||||||
Sbjct: 2976175 ggccagcgcctggtc 2976189




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 119     acgaagccgccgccg 133
               |||||||||||||||
Sbjct: 3068960 acgaagccgccgccg 3068946




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 126     cgccgccgccgagga 140
               |||||||||||||||
Sbjct: 3096927 cgccgccgccgagga 3096913




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 280     ggccagcgcctggtc 294
               |||||||||||||||
Sbjct: 3243000 ggccagcgcctggtc 3243014




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 126     cgccgccgccgagga 140
               |||||||||||||||
Sbjct: 3292868 cgccgccgccgagga 3292854




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 139     gatctggttgcccag 153
               |||||||||||||||
Sbjct: 3703153 gatctggttgcccag 3703167




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 127     gccgccgccgaggat 141
               |||||||||||||||
Sbjct: 3842168 gccgccgccgaggat 3842182




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 835     cgccccggtttccgc 849
               |||||||||||||||
Sbjct: 3877789 cgccccggtttccgc 3877803




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 835     cgccccggtttccgc 849
               |||||||||||||||
Sbjct: 3877818 cgccccggtttccgc 3877804




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 294     cctggggcaccgcct 308
               |||||||||||||||
Sbjct: 3977307 cctggggcaccgcct 3977293




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 21/23 (91%)
 Strand = Plus / Minus

                                      
Query: 124     gccgccgccgccgaggatctggt 146
               |||| ||||| ||||||||||||
Sbjct: 4322514 gccggcgccgtcgaggatctggt 4322492




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 124     gccgccgccgccgag 138
               |||||||||||||||
Sbjct: 4489291 gccgccgccgccgag 4489277




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 87      gcttttctcgcacct 101
               |||||||||||||||
Sbjct: 4720055 gcttttctcgcacct 4720069




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 126     cgccgccgccgagga 140
               |||||||||||||||
Sbjct: 4739558 cgccgccgccgagga 4739544




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 128     ccgccgccgaggatc 142
               |||||||||||||||
Sbjct: 4876995 ccgccgccgaggatc 4877009




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 268     ctgggcggtcttggc 282
               |||||||||||||||
Sbjct: 5096544 ctgggcggtcttggc 5096530




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 368     gatgaccacgttgcc 382
               |||||||||||||||
Sbjct: 5212392 gatgaccacgttgcc 5212406




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 144     ggttgcccaggtaga 158
               |||||||||||||||
Sbjct: 5216484 ggttgcccaggtaga 5216470




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 120     cgaagccgccgccgc 134
               |||||||||||||||
Sbjct: 5317533 cgaagccgccgccgc 5317547




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 130     gccgccgaggatctg 144
               |||||||||||||||
Sbjct: 5349826 gccgccgaggatctg 5349812




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 125     ccgccgccgccgagg 139
               |||||||||||||||
Sbjct: 5406496 ccgccgccgccgagg 5406482




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 264     ccggctgggcggtct 278
               |||||||||||||||
Sbjct: 5460998 ccggctgggcggtct 5460984




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 580     cgcccccaccgcccc 594
               |||||||||||||||
Sbjct: 5476858 cgcccccaccgcccc 5476844




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 280     ggccagcgcctggtcctgg 298
               ||||| |||||||||||||
Sbjct: 5768133 ggccatcgcctggtcctgg 5768115




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 377     gttgccggcggtgta 391
               |||||||||||||||
Sbjct: 5877119 gttgccggcggtgta 5877133




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 280     ggccagcgcctggtc 294
               |||||||||||||||
Sbjct: 5977958 ggccagcgcctggtc 5977944




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 287     gcctggtcctggggc 301
               |||||||||||||||
Sbjct: 6184461 gcctggtcctggggc 6184447




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 278     ttggccagcgcctgg 292
               |||||||||||||||
Sbjct: 6339225 ttggccagcgcctgg 6339211




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 853     cagcgcgcccggtgtgcgc 871
               |||||||||||| ||||||
Sbjct: 6352916 cagcgcgcccggagtgcgc 6352898




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 21/23 (91%)
 Strand = Plus / Minus

                                      
Query: 280     ggccagcgcctggtcctggggca 302
               ||||||||||||| |||| ||||
Sbjct: 6427196 ggccagcgcctggacctgcggca 6427174




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 127     gccgccgccgaggat 141
               |||||||||||||||
Sbjct: 6490918 gccgccgccgaggat 6490904




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6504
Number of Sequences: 1
Number of extensions: 6504
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of query: 878
length of database: 6,534,396
effective HSP length: 16
effective length of query: 862
effective length of database: 6,534,380
effective search space: 5632635560
effective search space used: 5632635560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)