BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (911 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                            88   2e-17 

>GCTS_68 
          Length = 6534396

 Score = 87.7 bits (44), Expect = 2e-17
 Identities = 53/56 (94%)
 Strand = Plus / Plus

                                                                       
Query: 150     gccgaccgcggctacctggtctccctgttccaggatgcctgtgccacccatacccc 205
               ||||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct: 5736336 gccgaccgcggctacctggtcaccctggtcgaggatgcctgtgccacccatacccc 5736391




 Score = 69.9 bits (35), Expect = 5e-12
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                                 
Query: 62      tatccatgtcgccagaggtgaanagtacgtccttggcccggaatacctct 111
               |||||||||||||  |||||||  ||||||||||||||||||||||||||
Sbjct: 5867085 tatccatgtcgccgaaggtgaaaggtacgtccttggcccggaatacctct 5867036




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                  
Query: 629    tctttttttcttctttgaac 648
              ||||||||||||||| ||||
Sbjct: 934950 tctttttttcttcttggaac 934931




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 116    cccatcatctgcagg 130
              |||||||||||||||
Sbjct: 988623 cccatcatctgcagg 988609




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 158     cggctacctggtctc 172
               |||||||||||||||
Sbjct: 1633810 cggctacctggtctc 1633796




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 102     gaatacctctccccc 116
               |||||||||||||||
Sbjct: 1775371 gaatacctctccccc 1775357




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 280     ccttcggcaccgcgt 294
               |||||||||||||||
Sbjct: 3685343 ccttcggcaccgcgt 3685357




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 579     ttttttcattccgtt 593
               |||||||||||||||
Sbjct: 6218549 ttttttcattccgtt 6218535




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1767
Number of Sequences: 1
Number of extensions: 1767
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 911
length of database: 6,534,396
effective HSP length: 16
effective length of query: 895
effective length of database: 6,534,380
effective search space: 5848270100
effective search space used: 5848270100
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)