BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (1118 letters)

Distribution of 59 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           143   6e-34 



>GCTS_68 
          Length = 6534396

 Score =  143 bits (72), Expect = 6e-34
 Identities = 114/128 (89%)
 Strand = Plus / Plus

                                                                          
Query: 198    ggttggggcatcgccttctacgaagaaggcgacgtgcaattgttccaggacccgctggag 257
              ||||||||||||||||||||||||| | ||| |||||   |||||||||||||||||| |
Sbjct: 737342 ggttggggcatcgccttctacgaaggacgcggcgtgcggctgttccaggacccgctggcg 737401

                                                                          
Query: 258    agcgtttattcggaggtggagcgcctggagcagctcttcccgataaagagcgagacggtc 317
              |||||  |||||||||||| ||| |||| ||||| ||||||||| |||||||||||||||
Sbjct: 737402 agcgtcgattcggaggtggcgcggctggtgcagcgcttcccgatcaagagcgagacggtc 737461

                      
Query: 318    atcgggca 325
              ||||||||
Sbjct: 737462 atcgggca 737469






 Score =  131 bits (66), Expect = 2e-30
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                           
Query: 63      taggtggagccggcgtggtaggggatctgccgcggcgccaccggcatcggcagcaggccg 122
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5895512 taggtggagccggcgtggtaggggatctgccgcggcgccaccggcatcggcagcaggccg 5895571

                     
Query: 123     ataccc 128
               ||||||
Sbjct: 5895572 ataccc 5895577






 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                             
Query: 84      gggatctgccgcggcgccaccggcatcggc 113
               ||||||||||||||||||||||||| ||||
Sbjct: 1137138 gggatctgccgcggcgccaccggcagcggc 1137109






 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 101     caccggcatcggcagcaggccg 122
               ||||||||||||||||||||||
Sbjct: 5694224 caccggcatcggcagcaggccg 5694203






 Score = 36.2 bits (18), Expect = 0.093
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 99     gccaccggcatcggcagcaggc 120
              |||| |||||||||||||||||
Sbjct: 829784 gccagcggcatcggcagcaggc 829805






 Score = 36.2 bits (18), Expect = 0.093
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 85      ggatctgccgcggcgcca 102
               ||||||||||||||||||
Sbjct: 3937353 ggatctgccgcggcgcca 3937370






 Score = 34.2 bits (17), Expect = 0.37
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 205     gcatcgccttctacgaa 221
               |||||||||||||||||
Sbjct: 1536203 gcatcgccttctacgaa 1536187






 Score = 34.2 bits (17), Expect = 0.37
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 98      cgccaccggcatcggca 114
               |||||||||||||||||
Sbjct: 3783242 cgccaccggcatcggca 3783258






 Score = 34.2 bits (17), Expect = 0.37
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 277     agcgcctggagcagctc 293
               |||||||||||||||||
Sbjct: 4705818 agcgcctggagcagctc 4705834






 Score = 34.2 bits (17), Expect = 0.37
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 274     tggagcgcctggagcag 290
               |||||||||||||||||
Sbjct: 5999233 tggagcgcctggagcag 5999217






 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 785    accgtcgtgaccggct 800
              ||||||||||||||||
Sbjct: 488079 accgtcgtgaccggct 488094






 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 84      gggatctgccgcggcg 99
               ||||||||||||||||
Sbjct: 2497242 gggatctgccgcggcg 2497227






 Score = 32.2 bits (16), Expect = 1.4
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                       
Query: 97      gcgccaccggcatcggcagcaggc 120
               |||||||| || ||||||||||||
Sbjct: 2961253 gcgccacctgcttcggcagcaggc 2961276






 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 112     gcagcaggccgatacc 127
               ||||||||||||||||
Sbjct: 3704209 gcagcaggccgatacc 3704194






 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 95      cggcgccaccggcatc 110
               ||||||||||||||||
Sbjct: 4068726 cggcgccaccggcatc 4068741






 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 92      ccgcggcgccaccggc 107
               ||||||||||||||||
Sbjct: 4234666 ccgcggcgccaccggc 4234681






 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 108     atcggcagcaggccga 123
               ||||||||||||||||
Sbjct: 4769440 atcggcagcaggccga 4769425






 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 92      ccgcggcgccaccggc 107
               ||||||||||||||||
Sbjct: 5201317 ccgcggcgccaccggc 5201302






 Score = 32.2 bits (16), Expect = 1.4
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 95      cggcgccaccggcatcggca 114
               |||||||||||||| |||||
Sbjct: 6254246 cggcgccaccggcaccggca 6254265






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                            
Query: 110   cggcagcaggccgat 124
             |||||||||||||||
Sbjct: 47026 cggcagcaggccgat 47012






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 272    ggtggagcgcctgga 286
              |||||||||||||||
Sbjct: 218310 ggtggagcgcctgga 218324






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 814    atctccatcagcgcc 828
              |||||||||||||||
Sbjct: 285364 atctccatcagcgcc 285350






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 274    tggagcgcctggagc 288
              |||||||||||||||
Sbjct: 287553 tggagcgcctggagc 287567






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 276    gagcgcctggagcag 290
              |||||||||||||||
Sbjct: 319805 gagcgcctggagcag 319819






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 277    agcgcctggagcagc 291
              |||||||||||||||
Sbjct: 460747 agcgcctggagcagc 460733






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                 
Query: 96     ggcgccaccggcatcggca 114
              |||||| ||||||||||||
Sbjct: 532733 ggcgcctccggcatcggca 532715






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                 
Query: 110    cggcagcaggccgataccc 128
              |||||||||||| ||||||
Sbjct: 536388 cggcagcaggcctataccc 536406






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 274    tggagcgcctggagc 288
              |||||||||||||||
Sbjct: 662847 tggagcgcctggagc 662861






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 214    tctacgaagaaggcg 228
              |||||||||||||||
Sbjct: 958055 tctacgaagaaggcg 958041






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 771     agaggcgccagggta 785
               |||||||||||||||
Sbjct: 1330169 agaggcgccagggta 1330183






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 275     ggagcgcctggagca 289
               |||||||||||||||
Sbjct: 1569937 ggagcgcctggagca 1569951






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 103     ccggcatcggcagca 117
               |||||||||||||||
Sbjct: 1847153 ccggcatcggcagca 1847167






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 818     ccatcagcgccgcgc 832
               |||||||||||||||
Sbjct: 2134286 ccatcagcgccgcgc 2134300






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 21/23 (91%)
 Strand = Plus / Minus

                                      
Query: 101     caccggcatcggcagcaggccga 123
               ||||||| || ||||||||||||
Sbjct: 2139683 caccggcgtcagcagcaggccga 2139661






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 104     cggcatcggcagcaggccg 122
               ||||||| |||||||||||
Sbjct: 2144940 cggcatcagcagcaggccg 2144922






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 94      gcggcgccaccggca 108
               |||||||||||||||
Sbjct: 2177358 gcggcgccaccggca 2177372






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 793     gaccggctccctcct 807
               |||||||||||||||
Sbjct: 2184991 gaccggctccctcct 2185005






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 279     cgcctggagcagctc 293
               |||||||||||||||
Sbjct: 2277008 cgcctggagcagctc 2276994






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 274     tggagcgcctggagcagct 292
               |||| ||||||||||||||
Sbjct: 2552601 tggaacgcctggagcagct 2552619






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 274     tggagcgcctggagc 288
               |||||||||||||||
Sbjct: 2811140 tggagcgcctggagc 2811126






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 104     cggcatcggcagcag 118
               |||||||||||||||
Sbjct: 2871269 cggcatcggcagcag 2871283






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 277     agcgcctggagcagc 291
               |||||||||||||||
Sbjct: 2907356 agcgcctggagcagc 2907342






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 89      ctgccgcggcgccaccggc 107
               |||| ||||||||||||||
Sbjct: 3414018 ctgcggcggcgccaccggc 3414000






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 606     tggcggtaacgttgg 620
               |||||||||||||||
Sbjct: 3525522 tggcggtaacgttgg 3525536






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 96      ggcgccaccggcatc 110
               |||||||||||||||
Sbjct: 3780647 ggcgccaccggcatc 3780661






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 816     ctccatcagcgccgc 830
               |||||||||||||||
Sbjct: 3954630 ctccatcagcgccgc 3954644






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 276     gagcgcctggagcag 290
               |||||||||||||||
Sbjct: 4031614 gagcgcctggagcag 4031628






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 819     catcagcgccgcgcc 833
               |||||||||||||||
Sbjct: 4051671 catcagcgccgcgcc 4051657






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 112     gcagcaggccgatac 126
               |||||||||||||||
Sbjct: 4203216 gcagcaggccgatac 4203230






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 109     tcggcagcaggccga 123
               |||||||||||||||
Sbjct: 4373528 tcggcagcaggccga 4373542






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 93      cgcggcgccaccggc 107
               |||||||||||||||
Sbjct: 4448258 cgcggcgccaccggc 4448244






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 106     gcatcggcagcaggccgat 124
               |||||||||||| ||||||
Sbjct: 4840018 gcatcggcagcacgccgat 4840000






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 97      gcgccaccggcatcg 111
               |||||||||||||||
Sbjct: 4893055 gcgccaccggcatcg 4893041






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 276     gagcgcctggagcag 290
               |||||||||||||||
Sbjct: 5049657 gagcgcctggagcag 5049671






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 817     tccatcagcgccgcg 831
               |||||||||||||||
Sbjct: 5195673 tccatcagcgccgcg 5195687






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 98      cgccaccggcatcggcagc 116
               |||| ||||||||||||||
Sbjct: 5251765 cgcccccggcatcggcagc 5251783






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 93      cgcggcgccaccggc 107
               |||||||||||||||
Sbjct: 5429770 cgcggcgccaccggc 5429784






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 113     cagcaggccgatacc 127
               |||||||||||||||
Sbjct: 6035569 cagcaggccgatacc 6035555






 Score = 30.2 bits (15), Expect = 5.7
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 95      cggcgccaccggcatcggc 113
               ||||||||||| |||||||
Sbjct: 6131400 cggcgccaccgccatcggc 6131382






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5280
Number of Sequences: 1
Number of extensions: 5280
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of query: 1118
length of database: 6,534,396
effective HSP length: 17
effective length of query: 1101
effective length of database: 6,534,379
effective search space: 7194351279
effective search space used: 7194351279
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)