BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (897 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           254   2e-67 

>GCTS_68 
          Length = 6534396

 Score =  254 bits (128), Expect = 2e-67
 Identities = 128/128 (100%)
 Strand = Plus / Minus

                                                                          
Query: 63     tatgcctatggcatgcaactggatgtggctcgcgttatatcttcaaccgacacttccaat 122
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257933 tatgcctatggcatgcaactggatgtggctcgcgttatatcttcaaccgacacttccaat 257874

                                                                          
Query: 123    gcctgcggcatcgttcccgcacgcatgacctacgaagattcgaacgggcagaaacatacc 182
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257873 gcctgcggcatcgttcccgcacgcatgacctacgaagattcgaacgggcagaaacatacc 257814

                      
Query: 183    gtcgaata 190
              ||||||||
Sbjct: 257813 gtcgaata 257806




 Score =  172 bits (87), Expect = 5e-43
 Identities = 96/100 (96%)
 Strand = Plus / Minus

                                                                          
Query: 235    acctccgggtcnacctccnaaggatcgcgccacgnggggcagctcgcccatccggcgcga 294
              ||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 257761 acctccgggtcgacctccgaaggatcgcgccacgaggggcagctcgcccatccggcgcga 257702

                                                      
Query: 295    tcattgtgtactcggcggcgaaaataccgcccctcggcga 334
              ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 257701 tcattgtgtactcggcggcgaaaatcccgcccctcggcga 257662




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 325    ccctcggcgacatct 339
              |||||||||||||||
Sbjct: 273859 ccctcggcgacatct 273873




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 277     ctcgcccatccggcg 291
               |||||||||||||||
Sbjct: 1521068 ctcgcccatccggcg 1521054




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 278     tcgcccatccggcgc 292
               |||||||||||||||
Sbjct: 5895127 tcgcccatccggcgc 5895113




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3158
Number of Sequences: 1
Number of extensions: 3158
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 897
length of database: 6,534,396
effective HSP length: 16
effective length of query: 881
effective length of database: 6,534,380
effective search space: 5756788780
effective search space used: 5756788780
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)