BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (889 letters)

Distribution of 38 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                          1160   0.0   



>GCTS_68 
          Length = 6534396

 Score = 1160 bits (585), Expect = 0.0
 Identities = 687/712 (96%), Gaps = 8/712 (1%)
 Strand = Plus / Plus

                                                                           
Query: 63      tatcatgcgaccccgcccggaatcgccgtgctgacccaggacagcgattgggaggtgctc 122
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933264 tatcatgcgaccccgcccggaatcgccgtgctgacccaggacagcgattgggaggtgctc 1933323

                                                                           
Query: 123     aacgaagccaccggcttctacgaggaaagcccgtatccctccgccttcaagggacaggtg 182
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933324 aacgaagccaccggcttctacgaggaaagcccgtatccctccgccttcaagggacaggtg 1933383

                                                                           
Query: 183     tatcgcgcgctgaactacataaacgctacgccgacgggcgcatcgctgctctggaacctc 242
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933384 tatcgcgcgctgaactacataaacgctacgccgacgggcgcatcgctgctctggaacctc 1933443

                                                                           
Query: 243     tacacgacgaacaatttcgtcgacatcaccccctcgtcgctgggcaacaatgtccagtcc 302
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933444 tacacgacgaacaatttcgtcgacatcaccccctcgtcgctgggcaacaatgtccagtcc 1933503

                                                                           
Query: 303     accaatcagcccatggcgctcaatcaggtcgccagagaaatcatcgtaggaaccggtccc 362
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933504 accaatcagcccatggcgctcaatcaggtcgccagagaaatcatcgtaggaaccggtccc 1933563

                                                                           
Query: 363     ggcccccagacccagatcgcgctcaatcagacaggcatcgccccgcaggcgcagacccag 422
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933564 ggcccccagacccagatcgcgctcaatcagacaggcatcgccccgcaggcgcagacccag 1933623

                                                                           
Query: 423     gggctgacctatgtcatcaacagttcgccgcattgggccctggacggcgtgccgggcaac 482
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933624 tggctgacctatgtcatcaacagttcgccgcattgggccctggacggcgtgccgggcaac 1933683

                                                                           
Query: 483     ggtggt-gcctttacggctatctagagcgcgcccgccagtatg-caaccgctggatgctg 540
               |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1933684 ggtggtggcctttacggctatctagagcgcgcccgccagtatgccaaccgctggatgctg 1933743

                                                                           
Query: 541     ctgttcgaccaccgctacttccgctggagcgacagcaatgaaagcttatttcaatgagca 600
               |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 1933744 ctgttcgaccaccgctacttccgctggagcgacagcaatgaaggc-tatttcaatgagca 1933802

                                                                           
Query: 601     gagcttcaggggaaaattttcggtatctccgccccacaaaatcgccatcacaaaccacga 660
               ||||| ||| ||| |  |||||||||||||| ||||||| ||||||||||| ||||||||
Sbjct: 1933803 gagctacagcggaca--tttcggtatctccg-cccacaacatcgccatcaccaaccacga 1933859

                                                                           
Query: 661     agtgggcggcctggctttgccggaaaaccgcttccccaccggctcagggatgcccagcag 720
               ||| ||||||||||| |||||||| | ||||| |||||||| ||||| ||||||||||||
Sbjct: 1933860 agt-ggcggcctggc-ttgccggacagccgctaccccaccgcctcagcgatgcccagcag 1933917

                                                                   
Query: 721     aaacatgcgcggcttgcgaccataattgcccttaaggactttccgccccctt 772
               || ||||||||||||||||||||| |||||||||||||| || |||| ||||
Sbjct: 1933918 aaccatgcgcggcttgcgaccatagttgcccttaaggacgtttcgccgcctt 1933969






 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 398    catcgccccgcaggcgc 414
              |||||||||||||||||
Sbjct: 655199 catcgccccgcaggcgc 655215






 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 531     ctggatgctgctgttcg 547
               |||||||||||||||||
Sbjct: 1070241 ctggatgctgctgttcg 1070257






 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 86      cgccgtgctgacccagg 102
               |||||||||||||||||
Sbjct: 4210134 cgccgtgctgacccagg 4210150






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 370    agacccagatcgcgct 385
              ||||||||||||||||
Sbjct: 869481 agacccagatcgcgct 869496






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 410     ggcgcagacccagggg 425
               ||||||||||||||||
Sbjct: 1457948 ggcgcagacccagggg 1457933






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 506     gagcgcgcccgccagt 521
               ||||||||||||||||
Sbjct: 4007176 gagcgcgcccgccagt 4007161






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 71      gaccccgcccggaatc 86
               ||||||||||||||||
Sbjct: 4314506 gaccccgcccggaatc 4314491






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 462     ctggacggcgtgccgggcaa 481
               |||| |||||||||||||||
Sbjct: 4381025 ctggccggcgtgccgggcaa 4381006






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 211     cgccgacgggcgcatc 226
               ||||||||||||||||
Sbjct: 4716728 cgccgacgggcgcatc 4716713






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 79      ccggaatcgccgtgctgacc 98
               |||||||||||| |||||||
Sbjct: 5004760 ccggaatcgccgcgctgacc 5004741






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 531     ctggatgctgctgttc 546
               ||||||||||||||||
Sbjct: 5739052 ctggatgctgctgttc 5739067






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                
Query: 267   atcaccccctcgtcgctgg 285
             |||||| ||||||||||||
Sbjct: 72345 atcacctcctcgtcgctgg 72327






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 462    ctggacggcgtgccg 476
              |||||||||||||||
Sbjct: 103554 ctggacggcgtgccg 103568






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 95     gacccaggacagcga 109
              |||||||||||||||
Sbjct: 472431 gacccaggacagcga 472445






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 77      gcccggaatcgccgtgctg 95
               |||||| ||||||||||||
Sbjct: 1108869 gcccggcatcgccgtgctg 1108851






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 116     ggtgctcaacgaagc 130
               |||||||||||||||
Sbjct: 1333009 ggtgctcaacgaagc 1332995






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 214     cgacgggcgcatcgc 228
               |||||||||||||||
Sbjct: 1413936 cgacgggcgcatcgc 1413922






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 405     ccgcaggcgcagacc 419
               |||||||||||||||
Sbjct: 1554805 ccgcaggcgcagacc 1554791






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 213     ccgacgggcgcatcg 227
               |||||||||||||||
Sbjct: 2753805 ccgacgggcgcatcg 2753791






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 81      ggaatcgccgtgctg 95
               |||||||||||||||
Sbjct: 2818443 ggaatcgccgtgctg 2818429






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 65      tcatgcgaccccgcc 79
               |||||||||||||||
Sbjct: 2840891 tcatgcgaccccgcc 2840905






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 466     acggcgtgccgggca 480
               |||||||||||||||
Sbjct: 2894035 acggcgtgccgggca 2894021






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 400     tcgccccgcaggcgc 414
               |||||||||||||||
Sbjct: 3117644 tcgccccgcaggcgc 3117630






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 212     gccgacgggcgcatc 226
               |||||||||||||||
Sbjct: 3934519 gccgacgggcgcatc 3934533






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 405     ccgcaggcgcagacc 419
               |||||||||||||||
Sbjct: 4122885 ccgcaggcgcagacc 4122871






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 459     gccctggacggcgtgccgg 477
               ||||||| |||||||||||
Sbjct: 4318914 gccctggccggcgtgccgg 4318896






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 397     gcatcgccccgcagg 411
               |||||||||||||||
Sbjct: 4475973 gcatcgccccgcagg 4475959






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 400     tcgccccgcaggcgc 414
               |||||||||||||||
Sbjct: 4681658 tcgccccgcaggcgc 4681644






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 464     ggacggcgtgccggg 478
               |||||||||||||||
Sbjct: 4686379 ggacggcgtgccggg 4686393






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 91      tgctgacccaggaca 105
               |||||||||||||||
Sbjct: 4991073 tgctgacccaggaca 4991087






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 661     agtgggcggcctggc 675
               |||||||||||||||
Sbjct: 5295017 agtgggcggcctggc 5295003






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 218     gggcgcatcgctgct 232
               |||||||||||||||
Sbjct: 5413390 gggcgcatcgctgct 5413404






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 532     tggatgctgctgttc 546
               |||||||||||||||
Sbjct: 5687575 tggatgctgctgttc 5687589






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 529     cgctggatgctgctg 543
               |||||||||||||||
Sbjct: 5955327 cgctggatgctgctg 5955341






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 163     ccgccttcaagggac 177
               |||||||||||||||
Sbjct: 5986211 ccgccttcaagggac 5986197






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 95      gacccaggacagcga 109
               |||||||||||||||
Sbjct: 6027033 gacccaggacagcga 6027047






 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 722     aacatgcgcggcttg 736
               |||||||||||||||
Sbjct: 6238984 aacatgcgcggcttg 6238998






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5788
Number of Sequences: 1
Number of extensions: 5788
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of query: 889
length of database: 6,534,396
effective HSP length: 16
effective length of query: 873
effective length of database: 6,534,380
effective search space: 5704513740
effective search space used: 5704513740
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)