BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (927 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           264   2e-70 

>GCTS_68 
          Length = 6534396

 Score =  264 bits (133), Expect = 2e-70
 Identities = 133/133 (100%)
 Strand = Plus / Minus

                                                                           
Query: 63      taacggcgacgcgcctcgagaccttcctccaggctgacggcgacgaaacgcgccttctgg 122
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6370315 taacggcgacgcgcctcgagaccttcctccaggctgacggcgacgaaacgcgccttctgg 6370256

                                                                           
Query: 123     ttcggttgcatctgcgccagccggttcaggtcggggctgatcaccgtgcccagcgtggca 182
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6370255 ttcggttgcatctgcgccagccggttcaggtcggggctgatcaccgtgcccagcgtggca 6370196

                            
Query: 183     tatcccccaccgg 195
               |||||||||||||
Sbjct: 6370195 tatcccccaccgg 6370183




 Score =  131 bits (66), Expect = 2e-30
 Identities = 110/121 (90%), Gaps = 3/121 (2%)
 Strand = Plus / Minus

                                                                           
Query: 234     gccnggtacctggatcgagtcgatggtatagcaagacgtcgactatgttggacggtttcc 293
               ||| ||||||||||||||| |||||| |||||| | ||||||| ||||||||||| | ||
Sbjct: 6370145 gcccggtacctggatcgagccgatgggatagcagg-cgtcgacgatgttggacgggt-cc 6370088

                                                                           
Query: 294     gagcctgcgcctaatggctgttcgcgccggctcgcaccggagcgccgtgccgcccttgaa 353
               ||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 6370087 gagcctgcgccgaatggctgttcgcgc-ggctcgaaccggagcgccgtgccgcccttgaa 6370029

                
Query: 354     g 354
               |
Sbjct: 6370028 g 6370028




 Score = 38.2 bits (19), Expect = 0.019
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 153     tcggggctgatcaccgtgcccagcgtg 179
               |||| |||||||||||||||| |||||
Sbjct: 2959109 tcggtgctgatcaccgtgcccggcgtg 2959083




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 85     cttcctccaggctgac 100
              ||||||||||||||||
Sbjct: 740894 cttcctccaggctgac 740879




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 342     gccgcccttgaagtcg 357
               ||||||||||||||||
Sbjct: 6242820 gccgcccttgaagtcg 6242805




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                
Query: 86    ttcctccaggctgacggcg 104
             ||||||||||||| |||||
Sbjct: 43773 ttcctccaggctgtcggcg 43755




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                 
Query: 73     gcgcctcgagaccttcctc 91
              |||||| ||||||||||||
Sbjct: 157180 gcgcctggagaccttcctc 157162




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 344    cgcccttgaagtcgg 358
              |||||||||||||||
Sbjct: 771781 cgcccttgaagtcgg 771795




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 95      gctgacggcgacgaa 109
               |||||||||||||||
Sbjct: 1103933 gctgacggcgacgaa 1103947




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 189     ccaccggcatcatct 203
               |||||||||||||||
Sbjct: 1355291 ccaccggcatcatct 1355277




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 80      gagaccttcctccag 94
               |||||||||||||||
Sbjct: 1477142 gagaccttcctccag 1477156




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 726     tgtctctgactgctg 740
               |||||||||||||||
Sbjct: 2102274 tgtctctgactgctg 2102288




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 367     gctttccgccttcga 381
               |||||||||||||||
Sbjct: 2399627 gctttccgccttcga 2399613




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 154     cggggctgatcaccg 168
               |||||||||||||||
Sbjct: 2670131 cggggctgatcaccg 2670145




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 243     ctggatcgagtcgat 257
               |||||||||||||||
Sbjct: 4704262 ctggatcgagtcgat 4704276




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 335     gcgccgtgccgccct 349
               |||||||||||||||
Sbjct: 4899314 gcgccgtgccgccct 4899328




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 92      caggctgacggcgacgaaacgcg 114
               |||||||||||||| ||| ||||
Sbjct: 4944738 caggctgacggcgaagaagcgcg 4944760




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 833     cttgtacatgctgtg 847
               |||||||||||||||
Sbjct: 5007921 cttgtacatgctgtg 5007907




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 445     cgtcatggccggcta 459
               |||||||||||||||
Sbjct: 5446450 cgtcatggccggcta 5446436




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 170     gcccagcgtggcata 184
               |||||||||||||||
Sbjct: 5703695 gcccagcgtggcata 5703709




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 84      ccttcctccaggctg 98
               |||||||||||||||
Sbjct: 5781719 ccttcctccaggctg 5781733




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 333     gagcgccgtgccgcc 347
               |||||||||||||||
Sbjct: 6206797 gagcgccgtgccgcc 6206811




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 188     cccaccggcatcatc 202
               |||||||||||||||
Sbjct: 6331449 cccaccggcatcatc 6331463




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3922
Number of Sequences: 1
Number of extensions: 3922
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of query: 927
length of database: 6,534,396
effective HSP length: 16
effective length of query: 911
effective length of database: 6,534,380
effective search space: 5952820180
effective search space used: 5952820180
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)