BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (904 letters)

Distribution of 69 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           557   e-159 

>GCTS_68 
          Length = 6534396

 Score =  557 bits (281), Expect = e-159
 Identities = 312/321 (97%), Gaps = 1/321 (0%)
 Strand = Plus / Plus

                                                                          
Query: 63     tataccggtccctactgtgtctcgcaggattgcccaggaggtcttcaccgaggccctgca 122
              ||||||||||||||||| | |||  || || |||| ||||| |||| |||||||||||||
Sbjct: 761765 tataccggtccctactgcgcctccaagcat-gccctggaggccttcgccgaggccctgca 761823

                                                                          
Query: 123    tgccgaactgaagccgttcggcatccaggtcggcaccatcaatcccggcccgtaccagac 182
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761824 tgccgaactgaagccgttcggcatccaggtcggcaccatcaatcccggcccgtaccagac 761883

                                                                          
Query: 183    cggcttcaacgatcgcatgatggaaacctggaaacgctggtacgacccgcagcgccactt 242
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761884 cggcttcaacgatcgcatgatggaaacctggaaacgctggtacgacccgcagcgccactt 761943

                                                                          
Query: 243    caccgaccacagcggcgtgcgctttcccttcgagcagtacgatccggaggaaatgatcgc 302
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761944 caccgaccacagcggcgtgcgctttcccttcgagcagtacgatccggaggaaatgatcgc 762003

                                                                          
Query: 303    gcggatggtcgagctggccgaggccgacgaaggaccgttccgcaccctgttgccggaagc 362
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762004 gcggatggtcgagctggccgaggccgacgaaggaccgttccgcaccctgttgccggaagc 762063

                                   
Query: 363    tttcgtcgaggtggtgaagga 383
              |||||||||||||||||||||
Sbjct: 762064 tttcgtcgaggtggtgaagga 762084




 Score = 38.2 bits (19), Expect = 0.019
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 133     aagccgttcggcatccagg 151
               |||||||||||||||||||
Sbjct: 1094016 aagccgttcggcatccagg 1094034




 Score = 38.2 bits (19), Expect = 0.019
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 144     catccaggtcggcaccatc 162
               |||||||||||||||||||
Sbjct: 3102786 catccaggtcggcaccatc 3102768




 Score = 38.2 bits (19), Expect = 0.019
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 312     cgagctggccgaggccgacgaag 334
               |||||||||| ||||||||||||
Sbjct: 5227194 cgagctggccaaggccgacgaag 5227216




 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 315    gctggccgaggccgacg 331
              |||||||||||||||||
Sbjct: 818119 gctggccgaggccgacg 818135




 Score = 34.2 bits (17), Expect = 0.30
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                        
Query: 242     tcaccgaccacagcggcgtgcgctt 266
               |||||||| || |||||||||||||
Sbjct: 2078438 tcaccgacaaccgcggcgtgcgctt 2078462




 Score = 34.2 bits (17), Expect = 0.30
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                    
Query: 245     ccgaccacagcggcgtgcgct 265
               ||||||||| |||||||||||
Sbjct: 3771989 ccgaccacatcggcgtgcgct 3771969




 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 309     ggtcgagctggccgagg 325
               |||||||||||||||||
Sbjct: 4368014 ggtcgagctggccgagg 4367998




 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 151     gtcggcaccatcaatcc 167
               |||||||||||||||||
Sbjct: 5143489 gtcggcaccatcaatcc 5143505




 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 312     cgagctggccgaggccg 328
               |||||||||||||||||
Sbjct: 5178246 cgagctggccgaggccg 5178262




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 225    cgacccgcagcgccac 240
              ||||||||||||||||
Sbjct: 114499 cgacccgcagcgccac 114514




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 319    gccgaggccgacgaag 334
              ||||||||||||||||
Sbjct: 119102 gccgaggccgacgaag 119117




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 112    gaggccctgcatgccg 127
              ||||||||||||||||
Sbjct: 205615 gaggccctgcatgccg 205630




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 141     cggcatccaggtcggc 156
               ||||||||||||||||
Sbjct: 1262369 cggcatccaggtcggc 1262354




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 312     cgagctggccgaggcc 327
               ||||||||||||||||
Sbjct: 1521822 cgagctggccgaggcc 1521807




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 311     tcgagctggccgaggccgac 330
               |||| |||||||||||||||
Sbjct: 1880721 tcgaactggccgaggccgac 1880740




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 361     gctttcgtcgaggtgg 376
               ||||||||||||||||
Sbjct: 3010643 gctttcgtcgaggtgg 3010628




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 317     tggccgaggccgacga 332
               ||||||||||||||||
Sbjct: 4371809 tggccgaggccgacga 4371794




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 121     catgccgaactgaagc 136
               ||||||||||||||||
Sbjct: 4705598 catgccgaactgaagc 4705583




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 224     acgacccgcagcgcca 239
               ||||||||||||||||
Sbjct: 5667734 acgacccgcagcgcca 5667749




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 591     tccctttccccctccg 606
               ||||||||||||||||
Sbjct: 6484974 tccctttccccctccg 6484989




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                 
Query: 317    tggccgaggccgacgaagg 335
              ||||||||||||| |||||
Sbjct: 107093 tggccgaggccgatgaagg 107111




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 150    ggtcggcaccatcaa 164
              |||||||||||||||
Sbjct: 171551 ggtcggcaccatcaa 171537




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 297    gatcgcgcggatggt 311
              |||||||||||||||
Sbjct: 190719 gatcgcgcggatggt 190705




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 174    gtaccagaccggctt 188
              |||||||||||||||
Sbjct: 223473 gtaccagaccggctt 223487




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 766    ccttccctttccctt 780
              |||||||||||||||
Sbjct: 297580 ccttccctttccctt 297594




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 312    cgagctggccgaggc 326
              |||||||||||||||
Sbjct: 566878 cgagctggccgaggc 566864




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                 
Query: 316    ctggccgaggccgacgaag 334
              ||||||| |||||||||||
Sbjct: 708415 ctggccggggccgacgaag 708397




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 311    tcgagctggccgagg 325
              |||||||||||||||
Sbjct: 784219 tcgagctggccgagg 784233




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 296     tgatcgcgcggatgg 310
               |||||||||||||||
Sbjct: 1394016 tgatcgcgcggatgg 1394030




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 225     cgacccgcagcgcca 239
               |||||||||||||||
Sbjct: 1496336 cgacccgcagcgcca 1496350




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 211     tggaaacgctggtac 225
               |||||||||||||||
Sbjct: 1615279 tggaaacgctggtac 1615265




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 309     ggtcgagctggccga 323
               |||||||||||||||
Sbjct: 1834515 ggtcgagctggccga 1834529




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 319     gccgaggccgacgaa 333
               |||||||||||||||
Sbjct: 1926882 gccgaggccgacgaa 1926896




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 307     atggtcgagctggcc 321
               |||||||||||||||
Sbjct: 2566255 atggtcgagctggcc 2566269




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 315     gctggccgaggccga 329
               |||||||||||||||
Sbjct: 2813901 gctggccgaggccga 2813887




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 312     cgagctggccgaggc 326
               |||||||||||||||
Sbjct: 2827055 cgagctggccgaggc 2827069




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 311     tcgagctggccgagg 325
               |||||||||||||||
Sbjct: 3058590 tcgagctggccgagg 3058576




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 108     caccgaggccctgcatgcc 126
               |||| ||||||||||||||
Sbjct: 3238861 cacccaggccctgcatgcc 3238843




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 312     cgagctggccgaggc 326
               |||||||||||||||
Sbjct: 3310320 cgagctggccgaggc 3310306




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 316     ctggccgaggccgac 330
               |||||||||||||||
Sbjct: 3389747 ctggccgaggccgac 3389761




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 304     cggatggtcgagctggccg 322
               ||||| |||||||||||||
Sbjct: 3536236 cggatcgtcgagctggccg 3536218




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 308     tggtcgagctggccg 322
               |||||||||||||||
Sbjct: 4004517 tggtcgagctggccg 4004531




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 296     tgatcgcgcggatgg 310
               |||||||||||||||
Sbjct: 4142646 tgatcgcgcggatgg 4142660




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 316     ctggccgaggccgac 330
               |||||||||||||||
Sbjct: 4222429 ctggccgaggccgac 4222443




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 298     atcgcgcggatggtc 312
               |||||||||||||||
Sbjct: 4259798 atcgcgcggatggtc 4259784




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 298     atcgcgcggatggtc 312
               |||||||||||||||
Sbjct: 4263681 atcgcgcggatggtc 4263667




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 298     atcgcgcggatggtc 312
               |||||||||||||||
Sbjct: 4265805 atcgcgcggatggtc 4265791




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 21/23 (91%)
 Strand = Plus / Minus

                                      
Query: 301     gcgcggatggtcgagctggccga 323
               |||| ||| ||||||||||||||
Sbjct: 4296422 gcgccgatcgtcgagctggccga 4296400




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 308     tggtcgagctggccg 322
               |||||||||||||||
Sbjct: 4345324 tggtcgagctggccg 4345310




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 124     gccgaactgaagccg 138
               |||||||||||||||
Sbjct: 4629013 gccgaactgaagccg 4629027




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 315     gctggccgaggccga 329
               |||||||||||||||
Sbjct: 4645353 gctggccgaggccga 4645339




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 251     acagcggcgtgcgct 265
               |||||||||||||||
Sbjct: 4737113 acagcggcgtgcgct 4737127




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 209     cctggaaacgctggt 223
               |||||||||||||||
Sbjct: 4992466 cctggaaacgctggt 4992452




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 319     gccgaggccgacgaa 333
               |||||||||||||||
Sbjct: 5029775 gccgaggccgacgaa 5029789




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 301     gcgcggatggtcgagctggccga 323
               ||||| |||| ||||||||||||
Sbjct: 5057715 gcgcgcatggccgagctggccga 5057737




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 223     tacgacccgcagcgc 237
               |||||||||||||||
Sbjct: 5115612 tacgacccgcagcgc 5115598




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 142     ggcatccaggtcggc 156
               |||||||||||||||
Sbjct: 5481234 ggcatccaggtcggc 5481220




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 312     cgagctggccgaggc 326
               |||||||||||||||
Sbjct: 5699217 cgagctggccgaggc 5699203




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 315     gctggccgaggccga 329
               |||||||||||||||
Sbjct: 5729177 gctggccgaggccga 5729191




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 114     ggccctgcatgccga 128
               |||||||||||||||
Sbjct: 6007459 ggccctgcatgccga 6007473




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 315     gctggccgaggccga 329
               |||||||||||||||
Sbjct: 6024798 gctggccgaggccga 6024812




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 311     tcgagctggccgagg 325
               |||||||||||||||
Sbjct: 6116962 tcgagctggccgagg 6116976




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 308     tggtcgagctggccgaggc 326
               |||||||||||||| ||||
Sbjct: 6152713 tggtcgagctggccaaggc 6152731




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 237     ccacttcaccgacca 251
               |||||||||||||||
Sbjct: 6158860 ccacttcaccgacca 6158846




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 224     acgacccgcagcgcc 238
               |||||||||||||||
Sbjct: 6243740 acgacccgcagcgcc 6243726




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 343     cgcaccctgttgccg 357
               |||||||||||||||
Sbjct: 6261156 cgcaccctgttgccg 6261142




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 113     aggccctgcatgccg 127
               |||||||||||||||
Sbjct: 6379155 aggccctgcatgccg 6379141




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 365     tcgtcgaggtggtga 379
               |||||||||||||||
Sbjct: 6452406 tcgtcgaggtggtga 6452392




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5315
Number of Sequences: 1
Number of extensions: 5315
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of query: 904
length of database: 6,534,396
effective HSP length: 16
effective length of query: 888
effective length of database: 6,534,380
effective search space: 5802529440
effective search space used: 5802529440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)