BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (976 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           168   8e-42 

>GCTS_68 
          Length = 6534396

 Score =  168 bits (85), Expect = 8e-42
 Identities = 141/158 (89%), Gaps = 2/158 (1%)
 Strand = Plus / Minus

                                                                          
Query: 116    aaggntnggtgggggnctacgggggcgtctacaacgccgtaccgcaaggccaagttcaac 175
              |||| | |||||| | |||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 567218 aaggctcggtgggcgcctactggggcgtctacaacgccg-accgcaaggccaagttcaac 567160

                                                                          
Query: 176    ttcaccgggccggtggtgccgattctcaagtggcgcgccctggccaatcgcttcgctgga 235
              ||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||  || 
Sbjct: 567159 ttcaccgggccggtggtgccgattcccaagtggcgcgccctggcc-atcgcctcggcggt 567101

                                                    
Query: 236    acacgcggtactctccttctccctgctgccgagcgaca 273
              || |||||||||| ||||| ||||||||| || |||||
Sbjct: 567100 actcgcggtactcgccttcaccctgctgctgatcgaca 567063




 Score = 36.2 bits (18), Expect = 0.081
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 318     caaggccgacggcaccac 335
               ||||||||||||||||||
Sbjct: 4428607 caaggccgacggcaccac 4428590




 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 312     cgtgttcaaggccgacg 328
               |||||||||||||||||
Sbjct: 2589469 cgtgttcaaggccgacg 2589453




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                             
Query: 317   tcaaggccgacggcac 332
             ||||||||||||||||
Sbjct: 24106 tcaaggccgacggcac 24121




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 205    gtggcgcgccctggcc 220
              ||||||||||||||||
Sbjct: 653734 gtggcgcgccctggcc 653749




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 462    cttcttgttgttctag 477
              ||||||||||||||||
Sbjct: 855584 cttcttgttgttctag 855599




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 206     tggcgcgccctggcca 221
               ||||||||||||||||
Sbjct: 1388787 tggcgcgccctggcca 1388802




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 315     gttcaaggccgacggcacca 334
               |||||| |||||||||||||
Sbjct: 5911701 gttcaacgccgacggcacca 5911720




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 207    ggcgcgccctggcca 221
              |||||||||||||||
Sbjct: 223651 ggcgcgccctggcca 223637




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 83     aggcatcttctgcgg 97
              |||||||||||||||
Sbjct: 323813 aggcatcttctgcgg 323827




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 314    tgttcaaggccgacg 328
              |||||||||||||||
Sbjct: 680478 tgttcaaggccgacg 680464




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 200     ctcaagtggcgcgcc 214
               |||||||||||||||
Sbjct: 2191568 ctcaagtggcgcgcc 2191554




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 206     tggcgcgccctggcc 220
               |||||||||||||||
Sbjct: 2731408 tggcgcgccctggcc 2731394




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 854     ctccagctcccacat 868
               |||||||||||||||
Sbjct: 2991541 ctccagctcccacat 2991555




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 318     caaggccgacggcac 332
               |||||||||||||||
Sbjct: 3603772 caaggccgacggcac 3603786




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 176     ttcaccgggccggtg 190
               |||||||||||||||
Sbjct: 3704652 ttcaccgggccggtg 3704666




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 206     tggcgcgccctggcc 220
               |||||||||||||||
Sbjct: 4849331 tggcgcgccctggcc 4849345




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 184     gccggtggtgccgat 198
               |||||||||||||||
Sbjct: 4881196 gccggtggtgccgat 4881210




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 252     ttctccctgctgccg 266
               |||||||||||||||
Sbjct: 5343911 ttctccctgctgccg 5343925




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 156     accgcaaggccaagt 170
               |||||||||||||||
Sbjct: 5494240 accgcaaggccaagt 5494226




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 319     aaggccgacggcaccacag 337
               ||||||| |||||||||||
Sbjct: 5678891 aaggccgccggcaccacag 5678909




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 929     gcggctctcgtcttc 943
               |||||||||||||||
Sbjct: 5709133 gcggctctcgtcttc 5709147




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 212     gccctggccaatcgc 226
               |||||||||||||||
Sbjct: 5748633 gccctggccaatcgc 5748619




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 180     ccgggccggtggtgc 194
               |||||||||||||||
Sbjct: 6028213 ccgggccggtggtgc 6028227




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 208     gcgcgccctggccaa 222
               |||||||||||||||
Sbjct: 6417136 gcgcgccctggccaa 6417122




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3084
Number of Sequences: 1
Number of extensions: 3084
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of query: 976
length of database: 6,534,396
effective HSP length: 16
effective length of query: 960
effective length of database: 6,534,380
effective search space: 6273004800
effective search space used: 6273004800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)