BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (555 letters)

Distribution of 38 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           466   e-131 

>GCTS_68 
          Length = 6534396

 Score =  466 bits (235), Expect = e-131
 Identities = 283/299 (94%)
 Strand = Plus / Minus

                                                                           
Query: 54      taggtgggcacgcagatggacatgccgatccacagcgcggtgatgtgccacctgtaccag 113
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6313148 taggtgggcacgcagatggacatgccgatccacagcgcggtgatgtgccacctgttccag 6313089

                                                                           
Query: 114     gtacgctgttccacccgggtcggggcgatgtcgtggttgtagcggggactgtcgagtacg 173
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6313088 gtacgctgttccacccgggtcggggcgatgtcgtggttgtagcggggactgtcgagtacg 6313029

                                                                           
Query: 174     tcgctgccggcggacagctcgaccaagccgtcgcgctcggtcacttccgatctgctctgt 233
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6313028 tcgctgccggcggacagctcgaccaagccgtcgcgctcggtcacttccgatctgctctgt 6312969

                                                                           
Query: 234     tgcatgggcctctccagaattcttttagttattcgctcatcgggctaatgctgtgggcgg 293
               |||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||
Sbjct: 6312968 tgcatgggcctctccagaattcttttagttattcgctcatcgggctaatgcgatggccgg 6312909

                                                                          
Query: 294     ggtcacgcaccaccaatactggaccgccaatccagacagtgccgaggcgggcggaactc 352
                ||  |||||||||| ||||| ||| ||  ||| |||| ||||| ||||||||| ||||
Sbjct: 6312908 agtaccgcaccaccagtactgcacctccggtccggacaatgccgtggcgggcggcactc 6312850




 Score = 34.2 bits (17), Expect = 0.18
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 200     gccgtcgcgctcggtca 216
               |||||||||||||||||
Sbjct: 5896249 gccgtcgcgctcggtca 5896265




 Score = 32.2 bits (16), Expect = 0.71
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 197    caagccgtcgcgctcg 212
              ||||||||||||||||
Sbjct: 181894 caagccgtcgcgctcg 181879




 Score = 32.2 bits (16), Expect = 0.71
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 280    aatgctgtgggcgggg 295
              ||||||||||||||||
Sbjct: 995225 aatgctgtgggcgggg 995240




 Score = 32.2 bits (16), Expect = 0.71
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 355     tgagcgaggcggaaac 370
               ||||||||||||||||
Sbjct: 1209977 tgagcgaggcggaaac 1209962




 Score = 32.2 bits (16), Expect = 0.71
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 70      tggacatgccgatcca 85
               ||||||||||||||||
Sbjct: 1368435 tggacatgccgatcca 1368450




 Score = 32.2 bits (16), Expect = 0.71
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 176     gctgccggcggacagc 191
               ||||||||||||||||
Sbjct: 3195278 gctgccggcggacagc 3195263




 Score = 32.2 bits (16), Expect = 0.71
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 497     ggatcgggtggtggaa 512
               ||||||||||||||||
Sbjct: 3421735 ggatcgggtggtggaa 3421720




 Score = 32.2 bits (16), Expect = 0.71
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 171     acgtcgctgccggcgg 186
               ||||||||||||||||
Sbjct: 3548971 acgtcgctgccggcgg 3548986




 Score = 32.2 bits (16), Expect = 0.71
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 130     gggtcggggcgatgtc 145
               ||||||||||||||||
Sbjct: 3620434 gggtcggggcgatgtc 3620419




 Score = 32.2 bits (16), Expect = 0.71
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 176     gctgccggcggacagc 191
               ||||||||||||||||
Sbjct: 4993904 gctgccggcggacagc 4993919




 Score = 32.2 bits (16), Expect = 0.71
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 181     cggcggacagctcgac 196
               ||||||||||||||||
Sbjct: 5612999 cggcggacagctcgac 5612984




 Score = 32.2 bits (16), Expect = 0.71
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 328     gacagtgccgaggcgg 343
               ||||||||||||||||
Sbjct: 6141724 gacagtgccgaggcgg 6141739




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 75     atgccgatccacagc 89
              |||||||||||||||
Sbjct: 575149 atgccgatccacagc 575163




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 333    tgccgaggcgggcgg 347
              |||||||||||||||
Sbjct: 642752 tgccgaggcgggcgg 642766




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 168    agtacgtcgctgccg 182
              |||||||||||||||
Sbjct: 697521 agtacgtcgctgccg 697535




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 175    cgctgccggcggaca 189
              |||||||||||||||
Sbjct: 910656 cgctgccggcggaca 910642




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 79      cgatccacagcgcgg 93
               |||||||||||||||
Sbjct: 1189390 cgatccacagcgcgg 1189404




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 333     tgccgaggcgggcgg 347
               |||||||||||||||
Sbjct: 1610872 tgccgaggcgggcgg 1610886




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 21/23 (91%)
 Strand = Plus / Minus

                                      
Query: 176     gctgccggcggacagctcgacca 198
               ||||||||||| |||| ||||||
Sbjct: 1961570 gctgccggcgggcagcacgacca 1961548




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 327     agacagtgccgaggc 341
               |||||||||||||||
Sbjct: 2022926 agacagtgccgaggc 2022940




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 77      gccgatccacagcgc 91
               |||||||||||||||
Sbjct: 2122949 gccgatccacagcgc 2122963




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 332     gtgccgaggcgggcg 346
               |||||||||||||||
Sbjct: 2181754 gtgccgaggcgggcg 2181768




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 176     gctgccggcggacagctcgacca 198
               ||||||| | |||||||||||||
Sbjct: 2443135 gctgccgcccgacagctcgacca 2443157




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 172     cgtcgctgccggcgg 186
               |||||||||||||||
Sbjct: 2635847 cgtcgctgccggcgg 2635861




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 85      acagcgcggtgatgt 99
               |||||||||||||||
Sbjct: 2850846 acagcgcggtgatgt 2850832




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 93      gtgatgtgccacctgtacc 111
               |||||| ||||||||||||
Sbjct: 3182585 gtgatgcgccacctgtacc 3182567




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 81      atccacagcgcggtg 95
               |||||||||||||||
Sbjct: 3253928 atccacagcgcggtg 3253914




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 68      gatggacatgccgat 82
               |||||||||||||||
Sbjct: 3674225 gatggacatgccgat 3674211




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 182     ggcggacagctcgac 196
               |||||||||||||||
Sbjct: 3710421 ggcggacagctcgac 3710435




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 129     cgggtcggggcgatg 143
               |||||||||||||||
Sbjct: 3750015 cgggtcggggcgatg 3750001




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 334     gccgaggcgggcgga 348
               |||||||||||||||
Sbjct: 4243719 gccgaggcgggcgga 4243705




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 332     gtgccgaggcgggcg 346
               |||||||||||||||
Sbjct: 4727927 gtgccgaggcgggcg 4727941




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 117     cgctgttccacccgg 131
               |||||||||||||||
Sbjct: 4931844 cgctgttccacccgg 4931830




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 180     ccggcggacagctcg 194
               |||||||||||||||
Sbjct: 5209684 ccggcggacagctcg 5209698




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 350     ctcggtgagcgaggc 364
               |||||||||||||||
Sbjct: 5229263 ctcggtgagcgaggc 5229249




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 76      tgccgatccacagcg 90
               |||||||||||||||
Sbjct: 5652219 tgccgatccacagcg 5652233




 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 334     gccgaggcgggcgga 348
               |||||||||||||||
Sbjct: 6264476 gccgaggcgggcgga 6264490




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3059
Number of Sequences: 1
Number of extensions: 3059
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of query: 555
length of database: 6,534,396
effective HSP length: 16
effective length of query: 539
effective length of database: 6,534,380
effective search space: 3522030820
effective search space used: 3522030820
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)