BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (876 letters)

Distribution of 61 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           743   0.0   

>GCTS_68 
          Length = 6534396

 Score =  743 bits (375), Expect = 0.0
 Identities = 385/387 (99%), Gaps = 1/387 (0%)
 Strand = Plus / Plus

                                                                          
Query: 61     tagcggtggccgacggctggtcggtggagttttggcgcgactactgcgatgcgcacaacg 120
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482233 tagcggtggccgacggctggtcggtggagttttggcgcgactactgcgatgcgcacaacg 482292

                                                                          
Query: 121    tattgctggtcggcatgcgccatggctcggtcacccgctacggattcgccgagggcacct 180
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482293 tattgctggtcggcatgcgccatggctcggtcacccgctacggattcgccgagggcacct 482352

                                                                          
Query: 181    accgctacgccgactatctgtgcggcagcgcctgggacatcgacgacaccctggcttcct 240
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482353 accgctacgccgactatctgtgcggcagcgcctgggacatcgacgacaccctggcttcct 482412

                                                                          
Query: 241    cggtgatgccgcgcaacggtttcctgctgaccggcaacgcctggtgcgacgaggtgttcc 300
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482413 cggtgatgccgcgcaacggtttcctgctgaccggcaacgcctggtgcgacgaggtgttcc 482472

                                                                          
Query: 301    ggctgcccgcgagaaccccggcggagaacgcgccgaccatcctcttcgcccccacctaca 360
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482473 ggctgcccgcgagaaccccggcggagaacgcgccgaccatcctcttcgcccccacctaca 482532

                                                                          
Query: 361    accccgagatcagcgccgccgtccacctcggcgagcgtgtggtggcgtttgatccgcaag 420
              ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 482533 accccgagatcagcgccgccgtccacctcggcgagcgtgtggtggcg-ttgatccgcaag 482591

                                         
Query: 421    gtctatcccgcgtcgcgtatcatcatc 447
              ||||||||||||||||| |||||||||
Sbjct: 482592 gtctatcccgcgtcgcggatcatcatc 482618




 Score = 42.1 bits (21), Expect = 0.001
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 357     tacaaccccgagatcagcgccgccg 381
               |||||||| ||||||||||||||||
Sbjct: 3537344 tacaacccggagatcagcgccgccg 3537320




 Score = 34.2 bits (17), Expect = 0.29
 Identities = 24/25 (96%), Gaps = 1/25 (4%)
 Strand = Plus / Plus

                                       
Query: 368    gatcagcgccgccgtccacctcggc 392
              ||||||||| |||||||||||||||
Sbjct: 558654 gatcagcgc-gccgtccacctcggc 558677




 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 219     atcgacgacaccctggc 235
               |||||||||||||||||
Sbjct: 2703194 atcgacgacaccctggc 2703210




 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 205     gcagcgcctgggacatc 221
               |||||||||||||||||
Sbjct: 3448010 gcagcgcctgggacatc 3448026




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 240     tcggtgatgccgcgca 255
               ||||||||||||||||
Sbjct: 1292435 tcggtgatgccgcgca 1292420




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 378     gccgtccacctcggcg 393
               ||||||||||||||||
Sbjct: 1556983 gccgtccacctcggcg 1556998




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 201     tgcggcagcgcctggg 216
               ||||||||||||||||
Sbjct: 4066688 tgcggcagcgcctggg 4066673




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 212     ctgggacatcgacgacaccc 231
               |||||||||||||| |||||
Sbjct: 4467363 ctgggacatcgacggcaccc 4467382




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 269     gaccggcaacgcctgg 284
               ||||||||||||||||
Sbjct: 4958071 gaccggcaacgcctgg 4958056




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 375     gccgccgtccacctcg 390
               ||||||||||||||||
Sbjct: 5642101 gccgccgtccacctcg 5642116




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                            
Query: 373   gcgccgccgtccacc 387
             |||||||||||||||
Sbjct: 35271 gcgccgccgtccacc 35285




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 217    acatcgacgacaccc 231
              |||||||||||||||
Sbjct: 292249 acatcgacgacaccc 292263




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 63     gcggtggccgacggc 77
              |||||||||||||||
Sbjct: 387330 gcggtggccgacggc 387344




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                 
Query: 375    gccgccgtccacctcggcg 393
              ||||||| |||||||||||
Sbjct: 621418 gccgccggccacctcggcg 621400




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 352    ccacctacaaccccg 366
              |||||||||||||||
Sbjct: 859011 ccacctacaaccccg 858997




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 201     tgcggcagcgcctgg 215
               |||||||||||||||
Sbjct: 1111495 tgcggcagcgcctgg 1111509




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 128     ggtcggcatgcgcca 142
               |||||||||||||||
Sbjct: 1223778 ggtcggcatgcgcca 1223764




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 63      gcggtggccgacggc 77
               |||||||||||||||
Sbjct: 1312819 gcggtggccgacggc 1312805




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 729     ggtctggtctgcgcc 743
               |||||||||||||||
Sbjct: 1328458 ggtctggtctgcgcc 1328444




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 310     cgagaaccccggcgg 324
               |||||||||||||||
Sbjct: 1329603 cgagaaccccggcgg 1329617




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 174     ggcacctaccgctac 188
               |||||||||||||||
Sbjct: 1395685 ggcacctaccgctac 1395699




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 220     tcgacgacaccctgg 234
               |||||||||||||||
Sbjct: 1530316 tcgacgacaccctgg 1530302




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 352     ccacctacaaccccg 366
               |||||||||||||||
Sbjct: 1780708 ccacctacaaccccg 1780722




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 149     ggtcacccgctacgg 163
               |||||||||||||||
Sbjct: 1797421 ggtcacccgctacgg 1797435




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 201     tgcggcagcgcctgg 215
               |||||||||||||||
Sbjct: 1850810 tgcggcagcgcctgg 1850796




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 327     aacgcgccgaccatc 341
               |||||||||||||||
Sbjct: 1863279 aacgcgccgaccatc 1863265




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 263     cctgctgaccggcaacgcc 281
               ||||||||||||| |||||
Sbjct: 2054930 cctgctgaccggcgacgcc 2054912




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 264     ctgctgaccggcaacgcct 282
               ||||||||||||| |||||
Sbjct: 2261539 ctgctgaccggcaccgcct 2261557




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 282     tggtgcgacgaggtg 296
               |||||||||||||||
Sbjct: 2308181 tggtgcgacgaggtg 2308195




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 129     gtcggcatgcgccat 143
               |||||||||||||||
Sbjct: 2391924 gtcggcatgcgccat 2391938




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 175     gcacctaccgctacg 189
               |||||||||||||||
Sbjct: 2405149 gcacctaccgctacg 2405135




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 287     cgacgaggtgttccg 301
               |||||||||||||||
Sbjct: 2934859 cgacgaggtgttccg 2934845




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 543     tttcttcttcctgtt 557
               |||||||||||||||
Sbjct: 3014049 tttcttcttcctgtt 3014035




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 202     gcggcagcgcctggg 216
               |||||||||||||||
Sbjct: 3056330 gcggcagcgcctggg 3056344




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 182     ccgctacgccgacta 196
               |||||||||||||||
Sbjct: 3254876 ccgctacgccgacta 3254862




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 296     gttccggctgcccgc 310
               |||||||||||||||
Sbjct: 3333558 gttccggctgcccgc 3333544




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 309     gcgagaaccccggcg 323
               |||||||||||||||
Sbjct: 3495867 gcgagaaccccggcg 3495881




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 201     tgcggcagcgcctgg 215
               |||||||||||||||
Sbjct: 3759211 tgcggcagcgcctgg 3759225




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 202     gcggcagcgcctggg 216
               |||||||||||||||
Sbjct: 3796354 gcggcagcgcctggg 3796368




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 229     ccctggcttcctcgg 243
               |||||||||||||||
Sbjct: 3928051 ccctggcttcctcgg 3928065




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 128     ggtcggcatgcgcca 142
               |||||||||||||||
Sbjct: 3984011 ggtcggcatgcgcca 3983997




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 174     ggcacctaccgctac 188
               |||||||||||||||
Sbjct: 4144314 ggcacctaccgctac 4144328




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 19      ggcatcatctgctgg 33
               |||||||||||||||
Sbjct: 4347757 ggcatcatctgctgg 4347771




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 124     tgctggtcggcatgc 138
               |||||||||||||||
Sbjct: 4353828 tgctggtcggcatgc 4353842




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 204     ggcagcgcctgggac 218
               |||||||||||||||
Sbjct: 4355088 ggcagcgcctgggac 4355102




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 21/23 (91%)
 Strand = Plus / Minus

                                      
Query: 67      tggccgacggctggtcggtggag 89
               ||||||||||||||  |||||||
Sbjct: 4449214 tggccgacggctggcaggtggag 4449192




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 124     tgctggtcggcatgc 138
               |||||||||||||||
Sbjct: 4699824 tgctggtcggcatgc 4699810




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 269     gaccggcaacgcctggtgc 287
               |||| ||||||||||||||
Sbjct: 4927586 gacccgcaacgcctggtgc 4927568




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 606     cattatccccgctcc 620
               |||||||||||||||
Sbjct: 5019020 cattatccccgctcc 5019034




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 132     ggcatgcgccatggc 146
               |||||||||||||||
Sbjct: 5232801 ggcatgcgccatggc 5232787




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 209     cgcctgggacatcga 223
               |||||||||||||||
Sbjct: 5268951 cgcctgggacatcga 5268937




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 180     taccgctacgccgac 194
               |||||||||||||||
Sbjct: 5367869 taccgctacgccgac 5367883




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 63      gcggtggccgacggc 77
               |||||||||||||||
Sbjct: 5405588 gcggtggccgacggc 5405574




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 267     ctgaccggcaacgcc 281
               |||||||||||||||
Sbjct: 5751329 ctgaccggcaacgcc 5751343




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 220     tcgacgacaccctgg 234
               |||||||||||||||
Sbjct: 5753615 tcgacgacaccctgg 5753601




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 374     cgccgccgtccacct 388
               |||||||||||||||
Sbjct: 5844805 cgccgccgtccacct 5844791




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 371     cagcgccgccgtcca 385
               |||||||||||||||
Sbjct: 5861104 cagcgccgccgtcca 5861090




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 124     tgctggtcggcatgc 138
               |||||||||||||||
Sbjct: 6022440 tgctggtcggcatgc 6022454




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 158     ctacggattcgccga 172
               |||||||||||||||
Sbjct: 6075891 ctacggattcgccga 6075877




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 255     aacggtttcctgctg 269
               |||||||||||||||
Sbjct: 6471103 aacggtttcctgctg 6471117




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6844
Number of Sequences: 1
Number of extensions: 6844
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of query: 876
length of database: 6,534,396
effective HSP length: 16
effective length of query: 860
effective length of database: 6,534,380
effective search space: 5619566800
effective search space used: 5619566800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)