BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (1054 letters)

Distribution of 97 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           492   e-139 

>GCTS_68 
          Length = 6534396

 Score =  492 bits (248), Expect = e-139
 Identities = 320/344 (93%)
 Strand = Plus / Minus

                                                                           
Query: 31      tactcgcggaggatgcgcagcgcgctgaacagcagcagcgcgaggaacaccagcaacatc 90
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6323664 tactcgcggaggatgcgcagcgcgctgaacagcagcagcgcgaggaacaccagcaacatc 6323605

                                                                           
Query: 91      gccaaaccataggaaatacccatcatccacctcatctgtaggcctggccaacttccagga 150
               ||||||||||||||||||||||||||||||||| |   | |||| |  | ||||||||||
Sbjct: 6323604 gccaaaccataggaaatacccatcatccacctccttcatcggccagcgcgacttccagga 6323545

                                                                           
Query: 151     gcaggcccttgcgcgccagcacccagaccggctggcccaccgccagcggccgcgcggcga 210
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6323544 gcaggcccttgcgcgccagcacccagaccggctggcccaccgccagcggccgcgcggcga 6323485

                                                                           
Query: 211     gcacccgccagcgctcgccctggagcagcacccagcctgcgcagggttgttcggaataca 270
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 6323484 gcacccgccagcgctcgccctggagcagcacccagcctgcgcagggttgttcggaatcca 6323425

                                                                           
Query: 271     ccgccgccacatcatctggggtgctgaccattccggaggtgccacttaccaccgcttgcc 330
               ||||||||||     |  || ||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 6323424 ccgccgccaccgtcgccaggctgccgaccaatccggcggtgccacttaccaccgcttgcc 6323365

                                                           
Query: 331     ggcgagtacgcagggtcatgcccaacagaccgacaatcagcgcg 374
               ||||||||||||||| |||||||| ||||||||| |||||||||
Sbjct: 6323364 ggcgagtacgcagggccatgcccagcagaccgacgatcagcgcg 6323321




 Score = 38.2 bits (19), Expect = 0.022
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 185     gcccaccgccagcggccgc 203
               |||||||||||||||||||
Sbjct: 1401380 gcccaccgccagcggccgc 1401398




 Score = 36.2 bits (18), Expect = 0.087
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 51      cgcgctgaacagcagcagcgcg 72
               ||||| ||||||||||||||||
Sbjct: 1483293 cgcgccgaacagcagcagcgcg 1483314




 Score = 36.2 bits (18), Expect = 0.087
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 163     gcgccagcacccagaccg 180
               ||||||||||||||||||
Sbjct: 5955939 gcgccagcacccagaccg 5955922




 Score = 34.2 bits (17), Expect = 0.35
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 328    gccggcgagtacgcagg 344
              |||||||||||||||||
Sbjct: 260065 gccggcgagtacgcagg 260081




 Score = 34.2 bits (17), Expect = 0.35
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 272     cgccgccacatcatctg 288
               |||||||||||||||||
Sbjct: 1907568 cgccgccacatcatctg 1907584




 Score = 34.2 bits (17), Expect = 0.35
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 78      caccagcaacatcgcca 94
               |||||||||||||||||
Sbjct: 2145195 caccagcaacatcgcca 2145179




 Score = 34.2 bits (17), Expect = 0.35
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 164     cgccagcacccagaccg 180
               |||||||||||||||||
Sbjct: 3429200 cgccagcacccagaccg 3429216




 Score = 34.2 bits (17), Expect = 0.35
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 187     ccaccgccagcggccgc 203
               |||||||||||||||||
Sbjct: 5223975 ccaccgccagcggccgc 5223991




 Score = 34.2 bits (17), Expect = 0.35
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 202     gcgcggcgagcacccgc 218
               |||||||||||||||||
Sbjct: 6131951 gcgcggcgagcacccgc 6131967




 Score = 34.2 bits (17), Expect = 0.35
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                    
Query: 53      cgctgaacagcagcagcgcga 73
               |||||||||||||||| ||||
Sbjct: 6199187 cgctgaacagcagcagggcga 6199167




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 80     ccagcaacatcgccaa 95
              ||||||||||||||||
Sbjct: 468742 ccagcaacatcgccaa 468757




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                  
Query: 150    agcaggcccttgcgcgccag 169
              |||||||| |||||||||||
Sbjct: 526319 agcaggccgttgcgcgccag 526338




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                  
Query: 57     gaacagcagcagcgcgagga 76
              ||||||||||||||| ||||
Sbjct: 861435 gaacagcagcagcgccagga 861454




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 151    gcaggcccttgcgcgc 166
              ||||||||||||||||
Sbjct: 900564 gcaggcccttgcgcgc 900549




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 48      cagcgcgctgaacagc 63
               ||||||||||||||||
Sbjct: 1582448 cagcgcgctgaacagc 1582433




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 65      gcagcgcgaggaacac 80
               ||||||||||||||||
Sbjct: 2123341 gcagcgcgaggaacac 2123356




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 291     gtgctgaccattccgg 306
               ||||||||||||||||
Sbjct: 2180905 gtgctgaccattccgg 2180890




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 194     cagcggccgcgcggcg 209
               ||||||||||||||||
Sbjct: 2192887 cagcggccgcgcggcg 2192872




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 57      gaacagcagcagcgcg 72
               ||||||||||||||||
Sbjct: 2267097 gaacagcagcagcgcg 2267082




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 202     gcgcggcgagcacccg 217
               ||||||||||||||||
Sbjct: 2714866 gcgcggcgagcacccg 2714851




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 187     ccaccgccagcggccg 202
               ||||||||||||||||
Sbjct: 2772858 ccaccgccagcggccg 2772873




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 155     gcccttgcgcgccagc 170
               ||||||||||||||||
Sbjct: 2795900 gcccttgcgcgccagc 2795885




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 244     agcctgcgcagggttgttcg 263
               |||||||||||||| |||||
Sbjct: 2845884 agcctgcgcagggtggttcg 2845903




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 48      cagcgcgctgaacagc 63
               ||||||||||||||||
Sbjct: 3183922 cagcgcgctgaacagc 3183937




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 47      gcagcgcgctgaacagcagc 66
               |||||||| |||||||||||
Sbjct: 3221148 gcagcgcggtgaacagcagc 3221167




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 57      gaacagcagcagcgcg 72
               ||||||||||||||||
Sbjct: 3513538 gaacagcagcagcgcg 3513553




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 164     cgccagcacccagacc 179
               ||||||||||||||||
Sbjct: 3731789 cgccagcacccagacc 3731804




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 152     caggcccttgcgcgcc 167
               ||||||||||||||||
Sbjct: 3743907 caggcccttgcgcgcc 3743922




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 185     gcccaccgccagcggc 200
               ||||||||||||||||
Sbjct: 3924894 gcccaccgccagcggc 3924879




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 52      gcgctgaacagcagcagcgc 71
               |||| |||||||||||||||
Sbjct: 4023401 gcgcggaacagcagcagcgc 4023382




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 45      gcgcagcgcgctgaacagca 64
               |||||| |||||||||||||
Sbjct: 4028910 gcgcagggcgctgaacagca 4028891




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 190     ccgccagcggccgcgc 205
               ||||||||||||||||
Sbjct: 4038633 ccgccagcggccgcgc 4038648




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 185     gcccaccgccagcggc 200
               ||||||||||||||||
Sbjct: 4073313 gcccaccgccagcggc 4073298




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 51      cgcgctgaacagcagc 66
               ||||||||||||||||
Sbjct: 4276713 cgcgctgaacagcagc 4276698




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 45      gcgcagcgcgctgaac 60
               ||||||||||||||||
Sbjct: 4495722 gcgcagcgcgctgaac 4495737




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 164     cgccagcacccagacc 179
               ||||||||||||||||
Sbjct: 4752260 cgccagcacccagacc 4752275




 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 147     aggagcaggcccttgc 162
               ||||||||||||||||
Sbjct: 5725724 aggagcaggcccttgc 5725709




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 152    caggcccttgcgcgc 166
              |||||||||||||||
Sbjct: 484283 caggcccttgcgcgc 484269




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                 
Query: 155    gcccttgcgcgccagcacc 173
              ||||||| |||||||||||
Sbjct: 498996 gcccttgagcgccagcacc 498978




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 227    gccctggagcagcac 241
              |||||||||||||||
Sbjct: 612568 gccctggagcagcac 612554




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 48     cagcgcgctgaacag 62
              |||||||||||||||
Sbjct: 627450 cagcgcgctgaacag 627464




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 57     gaacagcagcagcgc 71
              |||||||||||||||
Sbjct: 729542 gaacagcagcagcgc 729556




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 198    ggccgcgcggcgagc 212
              |||||||||||||||
Sbjct: 752297 ggccgcgcggcgagc 752311




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 173    ccagaccggctggcc 187
              |||||||||||||||
Sbjct: 858653 ccagaccggctggcc 858667




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 214    cccgccagcgctcgc 228
              |||||||||||||||
Sbjct: 859832 cccgccagcgctcgc 859818




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 159    ttgcgcgccagcacc 173
              |||||||||||||||
Sbjct: 906329 ttgcgcgccagcacc 906343




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 159     ttgcgcgccagcacc 173
               |||||||||||||||
Sbjct: 1051697 ttgcgcgccagcacc 1051711




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 42      gatgcgcagcgcgct 56
               |||||||||||||||
Sbjct: 1054875 gatgcgcagcgcgct 1054861




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 163     gcgccagcacccaga 177
               |||||||||||||||
Sbjct: 1078413 gcgccagcacccaga 1078399




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 150     agcaggcccttgcgc 164
               |||||||||||||||
Sbjct: 1325892 agcaggcccttgcgc 1325878




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 182     ctggcccaccgccagcggc 200
               ||||| |||||||||||||
Sbjct: 1346985 ctggcgcaccgccagcggc 1347003




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 142     cttccaggagcaggc 156
               |||||||||||||||
Sbjct: 1504503 cttccaggagcaggc 1504517




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 75      gaacaccagcaacatcgcc 93
               ||||||||||| |||||||
Sbjct: 1529967 gaacaccagcagcatcgcc 1529985




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 172     cccagaccggctggc 186
               |||||||||||||||
Sbjct: 1571546 cccagaccggctggc 1571532




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 64      agcagcgcgaggaac 78
               |||||||||||||||
Sbjct: 1605121 agcagcgcgaggaac 1605135




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 57      gaacagcagcagcgc 71
               |||||||||||||||
Sbjct: 1661696 gaacagcagcagcgc 1661682




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 49      agcgcgctgaacagcagca 67
               ||||||| |||||||||||
Sbjct: 1730741 agcgcgccgaacagcagca 1730759




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 62      gcagcagcgcgagga 76
               |||||||||||||||
Sbjct: 1906712 gcagcagcgcgagga 1906698




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 341     cagggtcatgcccaa 355
               |||||||||||||||
Sbjct: 1945411 cagggtcatgcccaa 1945425




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 144     tccaggagcaggccc 158
               |||||||||||||||
Sbjct: 1980311 tccaggagcaggccc 1980297




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 191     cgccagcggccgcgc 205
               |||||||||||||||
Sbjct: 2068909 cgccagcggccgcgc 2068923




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 42      gatgcgcagcgcgctgaacagca 64
               ||||||| ||| |||||||||||
Sbjct: 2105817 gatgcgctgcgggctgaacagca 2105839




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 41      ggatgcgcagcgcgc 55
               |||||||||||||||
Sbjct: 2202757 ggatgcgcagcgcgc 2202743




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 191     cgccagcggccgcgc 205
               |||||||||||||||
Sbjct: 2351814 cgccagcggccgcgc 2351828




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 50      gcgcgctgaacagca 64
               |||||||||||||||
Sbjct: 2520163 gcgcgctgaacagca 2520177




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 213     acccgccagcgctcg 227
               |||||||||||||||
Sbjct: 2526620 acccgccagcgctcg 2526606




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 31      tactcgcggaggatg 45
               |||||||||||||||
Sbjct: 2807002 tactcgcggaggatg 2807016




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 201     cgcgcggcgagcacc 215
               |||||||||||||||
Sbjct: 3155144 cgcgcggcgagcacc 3155130




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 54      gctgaacagcagcagcgcg 72
               ||||| |||||||||||||
Sbjct: 3242118 gctgaccagcagcagcgcg 3242136




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 190     ccgccagcggccgcg 204
               |||||||||||||||
Sbjct: 3517626 ccgccagcggccgcg 3517640




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 39      gaggatgcgcagcgc 53
               |||||||||||||||
Sbjct: 3578611 gaggatgcgcagcgc 3578625




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 192     gccagcggccgcgcg 206
               |||||||||||||||
Sbjct: 3593082 gccagcggccgcgcg 3593096




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 65      gcagcgcgaggaaca 79
               |||||||||||||||
Sbjct: 3607784 gcagcgcgaggaaca 3607798




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 61      agcagcagcgcgaggaaca 79
               |||||| ||||||||||||
Sbjct: 3609661 agcagcggcgcgaggaaca 3609643




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 48      cagcgcgctgaacag 62
               |||||||||||||||
Sbjct: 3680024 cagcgcgctgaacag 3680010




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 75      gaacaccagcaacatcgcc 93
               |||||||||||||| ||||
Sbjct: 3778984 gaacaccagcaacagcgcc 3778966




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 224     ctcgccctggagcagcacc 242
               ||||||||||| |||||||
Sbjct: 4066423 ctcgccctggatcagcacc 4066441




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 60      cagcagcagcgcgag 74
               |||||||||||||||
Sbjct: 4252805 cagcagcagcgcgag 4252819




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 340     gcagggtcatgccca 354
               |||||||||||||||
Sbjct: 4287591 gcagggtcatgccca 4287605




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 53      cgctgaacagcagcagcgcgagg 75
               ||||||||||  |||||||||||
Sbjct: 4317567 cgctgaacaggcgcagcgcgagg 4317589




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 210     agcacccgccagcgctcgc 228
               |||||| ||||||||||||
Sbjct: 4651189 agcaccagccagcgctcgc 4651207




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 52      gcgctgaacagcagc 66
               |||||||||||||||
Sbjct: 4785120 gcgctgaacagcagc 4785134




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 71      cgaggaacaccagca 85
               |||||||||||||||
Sbjct: 4795684 cgaggaacaccagca 4795670




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 33      ctcgcggaggatgcg 47
               |||||||||||||||
Sbjct: 4880141 ctcgcggaggatgcg 4880155




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 168     agcacccagaccggc 182
               |||||||||||||||
Sbjct: 4881791 agcacccagaccggc 4881777




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 190     ccgccagcggccgcgcggc 208
               ||||||||||| |||||||
Sbjct: 4891830 ccgccagcggcggcgcggc 4891848




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 143     ttccaggagcaggcc 157
               |||||||||||||||
Sbjct: 4911760 ttccaggagcaggcc 4911774




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 142     cttccaggagcaggc 156
               |||||||||||||||
Sbjct: 5116900 cttccaggagcaggc 5116886




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 80      ccagcaacatcgcca 94
               |||||||||||||||
Sbjct: 5225161 ccagcaacatcgcca 5225175




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 151     gcaggcccttgcgcgccag 169
               |||||||||||||| ||||
Sbjct: 5461649 gcaggcccttgcgcaccag 5461631




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 64      agcagcgcgaggaac 78
               |||||||||||||||
Sbjct: 5765806 agcagcgcgaggaac 5765792




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 21/23 (91%)
 Strand = Plus / Minus

                                      
Query: 42      gatgcgcagcgcgctgaacagca 64
               ||||||| ||| |||||||||||
Sbjct: 5843810 gatgcgctgcgggctgaacagca 5843788




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 182     ctggcccaccgccag 196
               |||||||||||||||
Sbjct: 6259652 ctggcccaccgccag 6259666




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 157     ccttgcgcgccagca 171
               |||||||||||||||
Sbjct: 6271733 ccttgcgcgccagca 6271719




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 189     accgccagcggccgc 203
               |||||||||||||||
Sbjct: 6372175 accgccagcggccgc 6372189




 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 150     agcaggcccttgcgc 164
               |||||||||||||||
Sbjct: 6433420 agcaggcccttgcgc 6433434




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7236
Number of Sequences: 1
Number of extensions: 7236
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of query: 1054
length of database: 6,534,396
effective HSP length: 17
effective length of query: 1037
effective length of database: 6,534,379
effective search space: 6776151023
effective search space used: 6776151023
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)