BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (637 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                          1021   0.0   

>GCTS_68 
          Length = 6534396

 Score = 1021 bits (515), Expect = 0.0
 Identities = 565/579 (97%), Gaps = 2/579 (0%)
 Strand = Plus / Minus

                                                                           
Query: 60      tattcttgctgaacccgctctctggaaacctgatccggtgttttcatcattttccaatcg 119
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6515219 tattcttgctgaacccgctctctggaaacctgatccggtgttttcatcattttccaatcg 6515160

                                                                           
Query: 120     atcacttgggcaactccacggttccgtcttcaacgatatggatggggacagggaatttgg 179
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6515159 atcacttgggcaactccacggttccgtcttcaacgatatggatggggacagggaatttgg 6515100

                                                                           
Query: 180     cagcttcgctgtagctcccccggatgggaaacaccaatgtcaggcatatctctccgcctg 239
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6515099 cagcttcgctgtagctcccccggatgggaaacaccaatgtcaggcatatctctccgcctg 6515040

                                                                           
Query: 240     ccctggtaaccctcccggaaaaaggcccctcatggatggcagaggctggcagatatcccc 299
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6515039 ccctggtaaccctcccggaaaaaggcccctcatggatggcagaggctggcagatatcccc 6514980

                                                                           
Query: 300     cctccggtaactgcgagaagtcgtacatgacacccgagacggctatcgaatctccggaaa 359
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6514979 cctccggtaactgcgagaagtcgtacatgacacccgagacggctatcgaatctccggaaa 6514920

                                                                           
Query: 360     ccatgacatccatatcagtcgagtcctcgggcaggactacaaccggactgagttcgatac 419
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6514919 ccatgacatccatatcagtcgagtcctcgggcaggactacaaccggactgagttcgatac 6514860

                                                                           
Query: 420     gcatcagtaccatcatctgca-agcctggacagtaatggtgacgttagcccccagtgcct 478
               |||||||||||| | ||  || ||||   || ||||||||| ||||||||||||||||||
Sbjct: 6514859 gcatcagtacca-cctccccacagccatcaccgtaatggtgtcgttagcccccagtgcct 6514801

                                                                           
Query: 479     gcgccgtcgcgaaagaaacagagctgctaccgttgagataggctccacgaaccccctgcc 538
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6514800 gcgccgtcgcgaaagaaacagagctgctaccgttgagataggctccacgaaccccctgcc 6514741

                                                                           
Query: 539     ctgcagtggcaagccatccgctggaaggaatccaattgcaggtcaccccggtattgaagc 598
               ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 6514740 ctgcagtggcaggccatccgctggagggaatccaattgcaggtcaccccggtattgaagc 6514681

                                                      
Query: 599     ccgtaacgaaagcagctgggagctgtatcacgttagctc 637
               |||||||||| |||||||| |||||||||||||||||||
Sbjct: 6514680 ccgtaacgaaggcagctggtagctgtatcacgttagctc 6514642




 Score = 32.2 bits (16), Expect = 0.82
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 411     gttcgatacgcatcag 426
               ||||||||||||||||
Sbjct: 3568406 gttcgatacgcatcag 3568421




 Score = 32.2 bits (16), Expect = 0.82
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 403     cggactgagttcgatacgca 422
               |||||||||||||| |||||
Sbjct: 5265753 cggactgagttcgaaacgca 5265772




 Score = 30.2 bits (15), Expect = 3.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 267    cctcatggatggcag 281
              |||||||||||||||
Sbjct: 807511 cctcatggatggcag 807525




 Score = 30.2 bits (15), Expect = 3.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 264     gcccctcatggatgg 278
               |||||||||||||||
Sbjct: 1938355 gcccctcatggatgg 1938341




 Score = 30.2 bits (15), Expect = 3.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 558     gctggaaggaatcca 572
               |||||||||||||||
Sbjct: 1951508 gctggaaggaatcca 1951494




 Score = 30.2 bits (15), Expect = 3.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 483     cgtcgcgaaagaaac 497
               |||||||||||||||
Sbjct: 3601414 cgtcgcgaaagaaac 3601428




 Score = 30.2 bits (15), Expect = 3.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 393     ggactacaaccggac 407
               |||||||||||||||
Sbjct: 3694126 ggactacaaccggac 3694140




 Score = 30.2 bits (15), Expect = 3.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 420     gcatcagtaccatca 434
               |||||||||||||||
Sbjct: 6040373 gcatcagtaccatca 6040359




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1770
Number of Sequences: 1
Number of extensions: 1770
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 637
length of database: 6,534,396
effective HSP length: 16
effective length of query: 621
effective length of database: 6,534,380
effective search space: 4057849980
effective search space used: 4057849980
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)